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Sequence, Chains, Asymmetric and Biological Units

Title SPECIFICITY OF COENZYME BINDING IN THIAMIN DIPHOSPHATE DEPENDENT ENZYMES: CRYSTAL STRUCTURES OF YEAST TRANSKETOLASE IN COMPLEX WITH ANALOGS OF THIAMIN DIPHOSPHATE
Keywords TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1TKC     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRANSKETOLASE  A 678 5198 0
2  Protein   TRANSKETOLASE  B 678 5198 0
3  Ligand   TRANSKETOLASE  A 1 0 1
4  Ligand   TRANSKETOLASE  B 1 0 1
5  Ligand   TRANSKETOLASE  A 1 0 27
6  Ligand   TRANSKETOLASE  B 1 0 27
total       1360 10396 56

Proteins
Unit 1 GLN3 PHE4 THR5 ASP6 ILE7 ASP8 LYS9 LEU10 ALA11 VAL12 SER13 THR14 ILE15 ARG16 ILE17 LEU18 ALA19 VAL20 ASP21 THR22 VAL23 SER24 LYS25 ALA26 ASN27 SER28 GLY29 HIS30 PRO31 GLY32 ALA33 PRO34 LEU35 GLY36 MET37 ALA38 PRO39 ALA40 ALA41 HIS42 VAL43 LEU44 TRP45 SER46 GLN47 MET48 ARG49 MET50 ASN51 PRO52 THR53 ASN54 PRO55 ASP56 TRP57 ILE58 ASN59 ARG60 ASP61 ARG62 PHE63 VAL64 LEU65 SER66 ASN67 GLY68 HIS69 ALA70 VAL71 ALA72 LEU73 LEU74 TYR75 SER76 MET77 LEU78 HIS79 LEU80 THR81 GLY82 TYR83 ASP84 LEU85 SER86 ILE87 GLU88 ASP89 LEU90 LYS91 GLN92 PHE93 ARG94 GLN95 LEU96 GLY97 SER98 ARG99 THR100 PRO101 GLY102 HIS103 PRO104 GLU105 PHE106 GLU107 LEU108 PRO109 GLY110 VAL111 GLU112 VAL113 THR114 THR115 GLY116 PRO117 LEU118 GLY119 GLN120 GLY121 ILE122 SER123 ASN124 ALA125 VAL126 GLY127 MET128 ALA129 MET130 ALA131 GLN132 ALA133 ASN134 LEU135 ALA136 ALA137 THR138 TYR139 ASN140 LYS141 PRO142 GLY143 PHE144 THR145 LEU146 SER147 ASP148 ASN149 TYR150 THR151 TYR152 VAL153 PHE154 LEU155 GLY156 ASP157 GLY158 CYS159 LEU160 GLN161 GLU162 GLY163 ILE164 SER165 SER166 GLU167 ALA168 SER169 SER170 LEU171 ALA172 GLY173 HIS174 LEU175 LYS176 LEU177 GLY178 ASN179 LEU180 ILE181 ALA182 ILE183 TYR184 ASP185 ASP186 ASN187 LYS188 ILE189 THR190 ILE191 ASP192 GLY193 ALA194 THR195 SER196 ILE197 SER198 PHE199 ASP200 GLU201 ASP202 VAL203 ALA204 LYS205 ARG206 TYR207 GLU208 ALA209 TYR210 GLY211 TRP212 GLU213 VAL214 LEU215 TYR216 VAL217 GLU218 ASN219 GLY220 ASN221 GLU222 ASP223 LEU224 ALA225 GLY226 ILE227 ALA228 LYS229 ALA230 ILE231 ALA232 GLN233 ALA234 LYS235 LEU236 SER237 LYS238 ASP239 LYS240 PRO241 THR242 LEU243 ILE244 LYS245 MET246 THR247 THR248 THR249 ILE250 GLY251 TYR252 GLY253 SER254 LEU255 HIS256 ALA257 GLY258 SER259 HIS260 SER261 VAL262 HIS263 GLY264 ALA265 PRO266 LEU267 LYS268 ALA269 ASP270 ASP271 VAL272 LYS273 GLN274 LEU275 LYS276 SER277 LYS278 PHE279 GLY280 PHE281 ASN282 PRO283 ASP284 LYS285 SER286 PHE287 VAL288 VAL289 PRO290 GLN291 GLU292 VAL293 TYR294 ASP295 HIS296 TYR297 GLN298 LYS299 THR300 ILE301 LEU302 LYS303 PRO304 GLY305 VAL306 GLU307 ALA308 ASN309 ASN310 LYS311 TRP312 ASN313 LYS314 LEU315 PHE316 SER317 GLU318 TYR319 GLN320 LYS321 LYS322 PHE323 PRO324 GLU325 LEU326 GLY327 ALA328 GLU329 LEU330 ALA331 ARG332 ARG333 LEU334 SER335 GLY336 GLN337 LEU338 PRO339 ALA340 ASN341 TRP342 GLU343 SER344 LYS345 LEU346 PRO347 THR348 TYR349 THR350 ALA351 LYS352 ASP353 SER354 ALA355 VAL356 ALA357 THR358 ARG359 LYS360 LEU361 SER362 GLU363 THR364 VAL365 LEU366 GLU367 ASP368 VAL369 TYR370 ASN371 GLN372 LEU373 PRO374 GLU375 LEU376 ILE377 GLY378 GLY379 SER380 ALA381 ASP382 LEU383 THR384 PRO385 SER386 ASN387 LEU388 THR389 ARG390 TRP391 LYS392 GLU393 ALA394 LEU395 ASP396 PHE397 GLN398 PRO399 PRO400 SER401 SER402 GLY403 SER404 GLY405 ASN406 TYR407 SER408 GLY409 ARG410 TYR411 ILE412 ARG413 TYR414 GLY415 ILE416 ARG417 GLU418 HIS419 ALA420 MET421 GLY422 ALA423 ILE424 MET425 ASN426 GLY427 ILE428 SER429 ALA430 PHE431 GLY432 ALA433 ASN434 TYR435 LYS436 PRO437 TYR438 GLY439 GLY440 THR441 PHE442 LEU443 ASN444 PHE445 VAL446 SER447 TYR448 ALA449 ALA450 GLY451 ALA452 VAL453 ARG454 LEU455 SER456 ALA457 LEU458 SER459 GLY460 HIS461 PRO462 VAL463 ILE464 TRP465 VAL466 ALA467 THR468 HIS469 ASP470 SER471 ILE472 GLY473 VAL474 GLY475 GLU476 ASP477 GLY478 PRO479 THR480 HIS481 GLN482 PRO483 ILE484 GLU485 THR486 LEU487 ALA488 HIS489 PHE490 ARG491 SER492 LEU493 PRO494 ASN495 ILE496 GLN497 VAL498 TRP499 ARG500 PRO501 ALA502 ASP503 GLY504 ASN505 GLU506 VAL507 SER508 ALA509 ALA510 TYR511 LYS512 ASN513 SER514 LEU515 GLU516 SER517 LYS518 HIS519 THR520 PRO521 SER522 ILE523 ILE524 ALA525 LEU526 SER527 ARG528 GLN529 ASN530 LEU531 PRO532 GLN533 LEU534 GLU535 GLY536 SER537 SER538 ILE539 GLU540 SER541 ALA542 SER543 LYS544 GLY545 GLY546 TYR547 VAL548 LEU549 GLN550 ASP551 VAL552 ALA553 ASN554 PRO555 ASP556 ILE557 ILE558 LEU559 VAL560 ALA561 THR562 GLY563 SER564 GLU565 VAL566 SER567 LEU568 SER569 VAL570 GLU571 ALA572 ALA573 LYS574 THR575 LEU576 ALA577 ALA578 LYS579 ASN580 ILE581 LYS582 ALA583 ARG584 VAL585 VAL586 SER587 LEU588 PRO589 ASP590 PHE591 PHE592 THR593 PHE594 ASP595 LYS596 GLN597 PRO598 LEU599 GLU600 TYR601 ARG602 LEU603 SER604 VAL605 LEU606 PRO607 ASP608 ASN609 VAL610 PRO611 ILE612 MET613 SER614 VAL615 GLU616 VAL617 LEU618 ALA619 THR620 THR621 CYS622 TRP623 GLY624 LYS625 TYR626 ALA627 HIS628 GLN629 SER630 PHE631 GLY632 ILE633 ASP634 ARG635 PHE636 GLY637 ALA638 SER639 GLY640 LYS641 ALA642 PRO643 GLU644 VAL645 PHE646 LYS647 PHE648 PHE649 GLY650 PHE651 THR652 PRO653 GLU654 GLY655 VAL656 ALA657 GLU658 ARG659 ALA660 GLN661 LYS662 THR663 ILE664 ALA665 PHE666 TYR667 LYS668 GLY669 ASP670 LYS671 LEU672 ILE673 SER674 PRO675 LEU676 LYS677 LYS678 ALA679 PHE680
Unit 2 GLN3 PHE4 THR5 ASP6 ILE7 ASP8 LYS9 LEU10 ALA11 VAL12 SER13 THR14 ILE15 ARG16 ILE17 LEU18 ALA19 VAL20 ASP21 THR22 VAL23 SER24 LYS25 ALA26 ASN27 SER28 GLY29 HIS30 PRO31 GLY32 ALA33 PRO34 LEU35 GLY36 MET37 ALA38 PRO39 ALA40 ALA41 HIS42 VAL43 LEU44 TRP45 SER46 GLN47 MET48 ARG49 MET50 ASN51 PRO52 THR53 ASN54 PRO55 ASP56 TRP57 ILE58 ASN59 ARG60 ASP61 ARG62 PHE63 VAL64 LEU65 SER66 ASN67 GLY68 HIS69 ALA70 VAL71 ALA72 LEU73 LEU74 TYR75 SER76 MET77 LEU78 HIS79 LEU80 THR81 GLY82 TYR83 ASP84 LEU85 SER86 ILE87 GLU88 ASP89 LEU90 LYS91 GLN92 PHE93 ARG94 GLN95 LEU96 GLY97 SER98 ARG99 THR100 PRO101 GLY102 HIS103 PRO104 GLU105 PHE106 GLU107 LEU108 PRO109 GLY110 VAL111 GLU112 VAL113 THR114 THR115 GLY116 PRO117 LEU118 GLY119 GLN120 GLY121 ILE122 SER123 ASN124 ALA125 VAL126 GLY127 MET128 ALA129 MET130 ALA131 GLN132 ALA133 ASN134 LEU135 ALA136 ALA137 THR138 TYR139 ASN140 LYS141 PRO142 GLY143 PHE144 THR145 LEU146 SER147 ASP148 ASN149 TYR150 THR151 TYR152 VAL153 PHE154 LEU155 GLY156 ASP157 GLY158 CYS159 LEU160 GLN161 GLU162 GLY163 ILE164 SER165 SER166 GLU167 ALA168 SER169 SER170 LEU171 ALA172 GLY173 HIS174 LEU175 LYS176 LEU177 GLY178 ASN179 LEU180 ILE181 ALA182 ILE183 TYR184 ASP185 ASP186 ASN187 LYS188 ILE189 THR190 ILE191 ASP192 GLY193 ALA194 THR195 SER196 ILE197 SER198 PHE199 ASP200 GLU201 ASP202 VAL203 ALA204 LYS205 ARG206 TYR207 GLU208 ALA209 TYR210 GLY211 TRP212 GLU213 VAL214 LEU215 TYR216 VAL217 GLU218 ASN219 GLY220 ASN221 GLU222 ASP223 LEU224 ALA225 GLY226 ILE227 ALA228 LYS229 ALA230 ILE231 ALA232 GLN233 ALA234 LYS235 LEU236 SER237 LYS238 ASP239 LYS240 PRO241 THR242 LEU243 ILE244 LYS245 MET246 THR247 THR248 THR249 ILE250 GLY251 TYR252 GLY253 SER254 LEU255 HIS256 ALA257 GLY258 SER259 HIS260 SER261 VAL262 HIS263 GLY264 ALA265 PRO266 LEU267 LYS268 ALA269 ASP270 ASP271 VAL272 LYS273 GLN274 LEU275 LYS276 SER277 LYS278 PHE279 GLY280 PHE281 ASN282 PRO283 ASP284 LYS285 SER286 PHE287 VAL288 VAL289 PRO290 GLN291 GLU292 VAL293 TYR294 ASP295 HIS296 TYR297 GLN298 LYS299 THR300 ILE301 LEU302 LYS303 PRO304 GLY305 VAL306 GLU307 ALA308 ASN309 ASN310 LYS311 TRP312 ASN313 LYS314 LEU315 PHE316 SER317 GLU318 TYR319 GLN320 LYS321 LYS322 PHE323 PRO324 GLU325 LEU326 GLY327 ALA328 GLU329 LEU330 ALA331 ARG332 ARG333 LEU334 SER335 GLY336 GLN337 LEU338 PRO339 ALA340 ASN341 TRP342 GLU343 SER344 LYS345 LEU346 PRO347 THR348 TYR349 THR350 ALA351 LYS352 ASP353 SER354 ALA355 VAL356 ALA357 THR358 ARG359 LYS360 LEU361 SER362 GLU363 THR364 VAL365 LEU366 GLU367 ASP368 VAL369 TYR370 ASN371 GLN372 LEU373 PRO374 GLU375 LEU376 ILE377 GLY378 GLY379 SER380 ALA381 ASP382 LEU383 THR384 PRO385 SER386 ASN387 LEU388 THR389 ARG390 TRP391 LYS392 GLU393 ALA394 LEU395 ASP396 PHE397 GLN398 PRO399 PRO400 SER401 SER402 GLY403 SER404 GLY405 ASN406 TYR407 SER408 GLY409 ARG410 TYR411 ILE412 ARG413 TYR414 GLY415 ILE416 ARG417 GLU418 HIS419 ALA420 MET421 GLY422 ALA423 ILE424 MET425 ASN426 GLY427 ILE428 SER429 ALA430 PHE431 GLY432 ALA433 ASN434 TYR435 LYS436 PRO437 TYR438 GLY439 GLY440 THR441 PHE442 LEU443 ASN444 PHE445 VAL446 SER447 TYR448 ALA449 ALA450 GLY451 ALA452 VAL453 ARG454 LEU455 SER456 ALA457 LEU458 SER459 GLY460 HIS461 PRO462 VAL463 ILE464 TRP465 VAL466 ALA467 THR468 HIS469 ASP470 SER471 ILE472 GLY473 VAL474 GLY475 GLU476 ASP477 GLY478 PRO479 THR480 HIS481 GLN482 PRO483 ILE484 GLU485 THR486 LEU487 ALA488 HIS489 PHE490 ARG491 SER492 LEU493 PRO494 ASN495 ILE496 GLN497 VAL498 TRP499 ARG500 PRO501 ALA502 ASP503 GLY504 ASN505 GLU506 VAL507 SER508 ALA509 ALA510 TYR511 LYS512 ASN513 SER514 LEU515 GLU516 SER517 LYS518 HIS519 THR520 PRO521 SER522 ILE523 ILE524 ALA525 LEU526 SER527 ARG528 GLN529 ASN530 LEU531 PRO532 GLN533 LEU534 GLU535 GLY536 SER537 SER538 ILE539 GLU540 SER541 ALA542 SER543 LYS544 GLY545 GLY546 TYR547 VAL548 LEU549 GLN550 ASP551 VAL552 ALA553 ASN554 PRO555 ASP556 ILE557 ILE558 LEU559 VAL560 ALA561 THR562 GLY563 SER564 GLU565 VAL566 SER567 LEU568 SER569 VAL570 GLU571 ALA572 ALA573 LYS574 THR575 LEU576 ALA577 ALA578 LYS579 ASN580 ILE581 LYS582 ALA583 ARG584 VAL585 VAL586 SER587 LEU588 PRO589 ASP590 PHE591 PHE592 THR593 PHE594 ASP595 LYS596 GLN597 PRO598 LEU599 GLU600 TYR601 ARG602 LEU603 SER604 VAL605 LEU606 PRO607 ASP608 ASN609 VAL610 PRO611 ILE612 MET613 SER614 VAL615 GLU616 VAL617 LEU618 ALA619 THR620 THR621 CYS622 TRP623 GLY624 LYS625 TYR626 ALA627 HIS628 GLN629 SER630 PHE631 GLY632 ILE633 ASP634 ARG635 PHE636 GLY637 ALA638 SER639 GLY640 LYS641 ALA642 PRO643 GLU644 VAL645 PHE646 LYS647 PHE648 PHE649 GLY650 PHE651 THR652 PRO653 GLU654 GLY655 VAL656 ALA657 GLU658 ARG659 ALA660 GLN661 LYS662 THR663 ILE664 ALA665 PHE666 TYR667 LYS668 GLY669 ASP670 LYS671 LEU672 ILE673 SER674 PRO675 LEU676 LYS677 LYS678 ALA679 PHE680

Ligands
Unit 3 CA682
Unit 4 CA682
Unit 5 M6T681
Unit 6 M6T681

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany