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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF T161D DUCK DELTA 2 CRYSTALLIN MUTANT WI ARGININOSUCCINATE
Keywords EYE LENS PROTEIN, DELTA 2 CRYSTALLIN, ARGININOSUCCINATE LYAS MECHANISM, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1TJW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DELTA CRYSTALLIN II  A 449 3464 0
2  Protein   DELTA CRYSTALLIN II  B 448 3441 0
3  Protein   DELTA CRYSTALLIN II  C 449 3456 0
4  Protein   DELTA CRYSTALLIN II  D 449 3468 0
5  Ligand   DELTA CRYSTALLIN II  A 1 0 20
6  Ligand   DELTA CRYSTALLIN II  B 1 0 20
7  Ligand   DELTA CRYSTALLIN II  C 1 0 20
8  Ligand   DELTA CRYSTALLIN II  D 1 0 20
9 Water     910 0 910
total       2709 13829 990
Proteins
Unit 1 THR19 ASP20 PRO21 ILE22 MET23 GLU24 LYS25 LEU26 ASN27 SER28 SER29 ILE30 ALA31 TYR32 ASP33 GLN34 ARG35 LEU36 SER37 GLU38 VAL39 ASP40 ILE41 GLN42 GLY43 SER44 MET45 ALA46 TYR47 ALA48 LYS49 ALA50 LEU51 GLU52 LYS53 ALA54 GLY55 ILE56 LEU57 THR58 LYS59 THR60 GLU61 LEU62 GLU63 LYS64 ILE65 LEU66 SER67 GLY68 LEU69 GLU70 LYS71 ILE72 SER73 GLU74 GLU75 TRP76 SER77 LYS78 GLY79 VAL80 PHE81 VAL82 VAL83 LYS84 GLN85 SER86 ASP87 GLU88 ASP89 ILE90 HIS91 THR92 ALA93 ASN94 GLU95 ARG96 ARG97 LEU98 LYS99 GLU100 LEU101 ILE102 GLY103 ASP104 ILE105 ALA106 GLY107 LYS108 LEU109 HIS110 THR111 GLY112 ARG113 SER114 ARG115 ASN116 ASP117 GLN118 VAL119 VAL120 THR121 ASP122 LEU123 LYS124 LEU125 PHE126 MET127 LYS128 ASN129 SER130 LEU131 SER132 ILE133 ILE134 SER135 THR136 HIS137 LEU138 LEU139 GLN140 LEU141 ILE142 LYS143 THR144 LEU145 VAL146 GLU147 ARG148 ALA149 ALA150 ILE151 GLU152 ILE153 ASP154 VAL155 ILE156 LEU157 PRO158 GLY159 TYR160 ASP161 HIS162 LEU163 GLN164 LYS165 ALA166 GLN167 PRO168 ILE169 ARG170 TRP171 SER172 GLN173 PHE174 LEU175 LEU176 SER177 HIS178 ALA179 VAL180 ALA181 LEU182 THR183 ARG184 ASP185 SER186 GLU187 ARG188 LEU189 GLY190 GLU191 VAL192 LYS193 LYS194 ARG195 ILE196 ASN197 VAL198 LEU199 PRO200 LEU201 GLY202 SER203 GLY204 ALA205 LEU206 ALA207 GLY208 ASN209 PRO210 LEU211 ASP212 ILE213 ASP214 ARG215 GLU216 MET217 LEU218 ARG219 SER220 GLU221 LEU222 GLU223 PHE224 ALA225 SER226 ILE227 SER228 LEU229 ASN230 SER231 MET232 ASP233 ALA234 ILE235 SER236 GLU237 ARG238 ASP239 PHE240 VAL241 VAL242 GLU243 PHE244 LEU245 SER246 PHE247 ALA248 THR249 LEU250 LEU251 MET252 ILE253 HIS254 LEU255 SER256 LYS257 MET258 ALA259 GLU260 ASP261 LEU262 ILE263 ILE264 TYR265 SER266 THR267 SER268 GLU269 PHE270 GLY271 PHE272 LEU273 THR274 LEU275 SER276 ASP277 ALA278 PHE279 SER280 THR281 GLY282 SER283 SER284 LEU285 MET286 PRO287 GLN288 LYS289 LYS290 ASN291 PRO292 ASP293 SER294 LEU295 GLU296 LEU297 ILE298 ARG299 SER300 LYS301 ALA302 GLY303 ARG304 VAL305 PHE306 GLY307 ARG308 LEU309 ALA310 SER311 ILE312 LEU313 MET314 VAL315 LEU316 LYS317 GLY318 LEU319 PRO320 SER321 THR322 TYR323 ASN324 LYS325 ASP326 LEU327 GLN328 GLU329 ASP330 LYS331 GLU332 ALA333 VAL334 PHE335 ASP336 VAL337 VAL338 ASP339 THR340 LEU341 THR342 ALA343 VAL344 LEU345 GLN346 VAL347 ALA348 THR349 GLY350 VAL351 ILE352 SER353 THR354 LEU355 GLN356 ILE357 SER358 LYS359 GLU360 ASN361 MET362 GLU363 LYS364 ALA365 LEU366 THR367 PRO368 GLU369 MET370 LEU371 ALA372 THR373 ASP374 LEU375 ALA376 LEU377 TYR378 LEU379 VAL380 ARG381 LYS382 GLY383 VAL384 PRO385 PHE386 ARG387 GLN388 ALA389 HIS390 THR391 ALA392 SER393 GLY394 LYS395 ALA396 VAL397 HIS398 LEU399 ALA400 GLU401 THR402 LYS403 GLY404 ILE405 THR406 ILE407 ASN408 LYS409 LEU410 SER411 LEU412 GLU413 ASP414 LEU415 LYS416 SER417 ILE418 SER419 PRO420 GLN421 PHE422 SER423 SER424 ASP425 VAL426 SER427 GLN428 VAL429 PHE430 ASN431 PHE432 VAL433 ASN434 SER435 VAL436 GLU437 GLN438 TYR439 THR440 ALA441 LEU442 ALA443 GLY444 THR445 ALA446 LYS447 SER448 SER449 VAL450 THR451 THR452 GLN453 ILE454 GLU455 GLN456 LEU457 ARG458 GLU459 LEU460 MET461 LYS462 LYS463 GLN464 LYS465 GLU466 GLN467
Unit 2 ASP20 PRO21 ILE22 MET23 GLU24 LYS25 LEU26 ASN27 SER28 SER29 ILE30 ALA31 TYR32 ASP33 GLN34 ARG35 LEU36 SER37 GLU38 VAL39 ASP40 ILE41 GLN42 GLY43 SER44 MET45 ALA46 TYR47 ALA48 LYS49 ALA50 LEU51 GLU52 LYS53 ALA54 GLY55 ILE56 LEU57 THR58 LYS59 THR60 GLU61 LEU62 GLU63 LYS64 ILE65 LEU66 SER67 GLY68 LEU69 GLU70 LYS71 ILE72 SER73 GLU74 GLU75 TRP76 SER77 LYS78 GLY79 VAL80 PHE81 VAL82 VAL83 LYS84 GLN85 SER86 ASP87 GLU88 ASP89 ILE90 HIS91 THR92 ALA93 ASN94 GLU95 ARG96 ARG97 LEU98 LYS99 GLU100 LEU101 ILE102 GLY103 ASP104 ILE105 ALA106 GLY107 LYS108 LEU109 HIS110 THR111 GLY112 ARG113 SER114 ARG115 ASN116 ASP117 GLN118 VAL119 VAL120 THR121 ASP122 LEU123 LYS124 LEU125 PHE126 MET127 LYS128 ASN129 SER130 LEU131 SER132 ILE133 ILE134 SER135 THR136 HIS137 LEU138 LEU139 GLN140 LEU141 ILE142 LYS143 THR144 LEU145 VAL146 GLU147 ARG148 ALA149 ALA150 ILE151 GLU152 ILE153 ASP154 VAL155 ILE156 LEU157 PRO158 GLY159 TYR160 ASP161 HIS162 LEU163 GLN164 LYS165 ALA166 GLN167 PRO168 ILE169 ARG170 TRP171 SER172 GLN173 PHE174 LEU175 LEU176 SER177 HIS178 ALA179 VAL180 ALA181 LEU182 THR183 ARG184 ASP185 SER186 GLU187 ARG188 LEU189 GLY190 GLU191 VAL192 LYS193 LYS194 ARG195 ILE196 ASN197 VAL198 LEU199 PRO200 LEU201 GLY202 SER203 GLY204 ALA205 LEU206 ALA207 GLY208 ASN209 PRO210 LEU211 ASP212 ILE213 ASP214 ARG215 GLU216 MET217 LEU218 ARG219 SER220 GLU221 LEU222 GLU223 PHE224 ALA225 SER226 ILE227 SER228 LEU229 ASN230 SER231 MET232 ASP233 ALA234 ILE235 SER236 GLU237 ARG238 ASP239 PHE240 VAL241 VAL242 GLU243 PHE244 LEU245 SER246 PHE247 ALA248 THR249 LEU250 LEU251 MET252 ILE253 HIS254 LEU255 SER256 LYS257 MET258 ALA259 GLU260 ASP261 LEU262 ILE263 ILE264 TYR265 SER266 THR267 SER268 GLU269 PHE270 GLY271 PHE272 LEU273 THR274 LEU275 SER276 ASP277 ALA278 PHE279 SER280 THR281 GLY282 SER283 SER284 LEU285 MET286 PRO287 GLN288 LYS289 LYS290 ASN291 PRO292 ASP293 SER294 LEU295 GLU296 LEU297 ILE298 ARG299 SER300 LYS301 ALA302 GLY303 ARG304 VAL305 PHE306 GLY307 ARG308 LEU309 ALA310 SER311 ILE312 LEU313 MET314 VAL315 LEU316 LYS317 GLY318 LEU319 PRO320 SER321 THR322 TYR323 ASN324 LYS325 ASP326 LEU327 GLN328 GLU329 ASP330 LYS331 GLU332 ALA333 VAL334 PHE335 ASP336 VAL337 VAL338 ASP339 THR340 LEU341 THR342 ALA343 VAL344 LEU345 GLN346 VAL347 ALA348 THR349 GLY350 VAL351 ILE352 SER353 THR354 LEU355 GLN356 ILE357 SER358 LYS359 GLU360 ASN361 MET362 GLU363 LYS364 ALA365 LEU366 THR367 PRO368 GLU369 MET370 LEU371 ALA372 THR373 ASP374 LEU375 ALA376 LEU377 TYR378 LEU379 VAL380 ARG381 LYS382 GLY383 VAL384 PRO385 PHE386 ARG387 GLN388 ALA389 HIS390 THR391 ALA392 SER393 GLY394 LYS395 ALA396 VAL397 HIS398 LEU399 ALA400 GLU401 THR402 LYS403 GLY404 ILE405 THR406 ILE407 ASN408 LYS409 LEU410 SER411 LEU412 GLU413 ASP414 LEU415 LYS416 SER417 ILE418 SER419 PRO420 GLN421 PHE422 SER423 SER424 ASP425 VAL426 SER427 GLN428 VAL429 PHE430 ASN431 PHE432 VAL433 ASN434 SER435 VAL436 GLU437 GLN438 TYR439 THR440 ALA441 LEU442 ALA443 GLY444 THR445 ALA446 LYS447 SER448 SER449 VAL450 THR451 THR452 GLN453 ILE454 GLU455 GLN456 LEU457 ARG458 GLU459 LEU460 MET461 LYS462 LYS463 GLN464 LYS465 GLU466 GLN467
Unit 3 ASP20 PRO21 ILE22 MET23 GLU24 LYS25 LEU26 ASN27 SER28 SER29 ILE30 ALA31 TYR32 ASP33 GLN34 ARG35 LEU36 SER37 GLU38 VAL39 ASP40 ILE41 GLN42 GLY43 SER44 MET45 ALA46 TYR47 ALA48 LYS49 ALA50 LEU51 GLU52 LYS53 ALA54 GLY55 ILE56 LEU57 THR58 LYS59 THR60 GLU61 LEU62 GLU63 LYS64 ILE65 LEU66 SER67 GLY68 LEU69 GLU70 LYS71 ILE72 SER73 GLU74 GLU75 TRP76 SER77 LYS78 GLY79 VAL80 PHE81 VAL82 VAL83 LYS84 GLN85 SER86 ASP87 GLU88 ASP89 ILE90 HIS91 THR92 ALA93 ASN94 GLU95 ARG96 ARG97 LEU98 LYS99 GLU100 LEU101 ILE102 GLY103 ASP104 ILE105 ALA106 GLY107 LYS108 LEU109 HIS110 THR111 GLY112 ARG113 SER114 ARG115 ASN116 ASP117 GLN118 VAL119 VAL120 THR121 ASP122 LEU123 LYS124 LEU125 PHE126 MET127 LYS128 ASN129 SER130 LEU131 SER132 ILE133 ILE134 SER135 THR136 HIS137 LEU138 LEU139 GLN140 LEU141 ILE142 LYS143 THR144 LEU145 VAL146 GLU147 ARG148 ALA149 ALA150 ILE151 GLU152 ILE153 ASP154 VAL155 ILE156 LEU157 PRO158 GLY159 TYR160 ASP161 HIS162 LEU163 GLN164 LYS165 ALA166 GLN167 PRO168 ILE169 ARG170 TRP171 SER172 GLN173 PHE174 LEU175 LEU176 SER177 HIS178 ALA179 VAL180 ALA181 LEU182 THR183 ARG184 ASP185 SER186 GLU187 ARG188 LEU189 GLY190 GLU191 VAL192 LYS193 LYS194 ARG195 ILE196 ASN197 VAL198 LEU199 PRO200 LEU201 GLY202 SER203 GLY204 ALA205 LEU206 ALA207 GLY208 ASN209 PRO210 LEU211 ASP212 ILE213 ASP214 ARG215 GLU216 MET217 LEU218 ARG219 SER220 GLU221 LEU222 GLU223 PHE224 ALA225 SER226 ILE227 SER228 LEU229 ASN230 SER231 MET232 ASP233 ALA234 ILE235 SER236 GLU237 ARG238 ASP239 PHE240 VAL241 VAL242 GLU243 PHE244 LEU245 SER246 PHE247 ALA248 THR249 LEU250 LEU251 MET252 ILE253 HIS254 LEU255 SER256 LYS257 MET258 ALA259 GLU260 ASP261 LEU262 ILE263 ILE264 TYR265 SER266 THR267 SER268 GLU269 PHE270 GLY271 PHE272 LEU273 THR274 LEU275 SER276 ASP277 ALA278 PHE279 SER280 THR281 GLY282 SER283 SER284 LEU285 MET286 PRO287 GLN288 LYS289 LYS290 ASN291 PRO292 ASP293 SER294 LEU295 GLU296 LEU297 ILE298 ARG299 SER300 LYS301 ALA302 GLY303 ARG304 VAL305 PHE306 GLY307 ARG308 LEU309 ALA310 SER311 ILE312 LEU313 MET314 VAL315 LEU316 LYS317 GLY318 LEU319 PRO320 SER321 THR322 TYR323 ASN324 LYS325 ASP326 LEU327 GLN328 GLU329 ASP330 LYS331 GLU332 ALA333 VAL334 PHE335 ASP336 VAL337 VAL338 ASP339 THR340 LEU341 THR342 ALA343 VAL344 LEU345 GLN346 VAL347 ALA348 THR349 GLY350 VAL351 ILE352 SER353 THR354 LEU355 GLN356 ILE357 SER358 LYS359 GLU360 ASN361 MET362 GLU363 LYS364 ALA365 LEU366 THR367 PRO368 GLU369 MET370 LEU371 ALA372 THR373 ASP374 LEU375 ALA376 LEU377 TYR378 LEU379 VAL380 ARG381 LYS382 GLY383 VAL384 PRO385 PHE386 ARG387 GLN388 ALA389 HIS390 THR391 ALA392 SER393 GLY394 LYS395 ALA396 VAL397 HIS398 LEU399 ALA400 GLU401 THR402 LYS403 GLY404 ILE405 THR406 ILE407 ASN408 LYS409 LEU410 SER411 LEU412 GLU413 ASP414 LEU415 LYS416 SER417 ILE418 SER419 PRO420 GLN421 PHE422 SER423 SER424 ASP425 VAL426 SER427 GLN428 VAL429 PHE430 ASN431 PHE432 VAL433 ASN434 SER435 VAL436 GLU437 GLN438 TYR439 THR440 ALA441 LEU442 ALA443 GLY444 THR445 ALA446 LYS447 SER448 SER449 VAL450 THR451 THR452 GLN453 ILE454 GLU455 GLN456 LEU457 ARG458 GLU459 LEU460 MET461 LYS462 LYS463 GLN464 LYS465 GLU466 GLN467 ALA468
Unit 4 THR19 ASP20 PRO21 ILE22 MET23 GLU24 LYS25 LEU26 ASN27 SER28 SER29 ILE30 ALA31 TYR32 ASP33 GLN34 ARG35 LEU36 SER37 GLU38 VAL39 ASP40 ILE41 GLN42 GLY43 SER44 MET45 ALA46 TYR47 ALA48 LYS49 ALA50 LEU51 GLU52 LYS53 ALA54 GLY55 ILE56 LEU57 THR58 LYS59 THR60 GLU61 LEU62 GLU63 LYS64 ILE65 LEU66 SER67 GLY68 LEU69 GLU70 LYS71 ILE72 SER73 GLU74 GLU75 TRP76 SER77 LYS78 GLY79 VAL80 PHE81 VAL82 VAL83 LYS84 GLN85 SER86 ASP87 GLU88 ASP89 ILE90 HIS91 THR92 ALA93 ASN94 GLU95 ARG96 ARG97 LEU98 LYS99 GLU100 LEU101 ILE102 GLY103 ASP104 ILE105 ALA106 GLY107 LYS108 LEU109 HIS110 THR111 GLY112 ARG113 SER114 ARG115 ASN116 ASP117 GLN118 VAL119 VAL120 THR121 ASP122 LEU123 LYS124 LEU125 PHE126 MET127 LYS128 ASN129 SER130 LEU131 SER132 ILE133 ILE134 SER135 THR136 HIS137 LEU138 LEU139 GLN140 LEU141 ILE142 LYS143 THR144 LEU145 VAL146 GLU147 ARG148 ALA149 ALA150 ILE151 GLU152 ILE153 ASP154 VAL155 ILE156 LEU157 PRO158 GLY159 TYR160 ASP161 HIS162 LEU163 GLN164 LYS165 ALA166 GLN167 PRO168 ILE169 ARG170 TRP171 SER172 GLN173 PHE174 LEU175 LEU176 SER177 HIS178 ALA179 VAL180 ALA181 LEU182 THR183 ARG184 ASP185 SER186 GLU187 ARG188 LEU189 GLY190 GLU191 VAL192 LYS193 LYS194 ARG195 ILE196 ASN197 VAL198 LEU199 PRO200 LEU201 GLY202 SER203 GLY204 ALA205 LEU206 ALA207 GLY208 ASN209 PRO210 LEU211 ASP212 ILE213 ASP214 ARG215 GLU216 MET217 LEU218 ARG219 SER220 GLU221 LEU222 GLU223 PHE224 ALA225 SER226 ILE227 SER228 LEU229 ASN230 SER231 MET232 ASP233 ALA234 ILE235 SER236 GLU237 ARG238 ASP239 PHE240 VAL241 VAL242 GLU243 PHE244 LEU245 SER246 PHE247 ALA248 THR249 LEU250 LEU251 MET252 ILE253 HIS254 LEU255 SER256 LYS257 MET258 ALA259 GLU260 ASP261 LEU262 ILE263 ILE264 TYR265 SER266 THR267 SER268 GLU269 PHE270 GLY271 PHE272 LEU273 THR274 LEU275 SER276 ASP277 ALA278 PHE279 SER280 THR281 GLY282 SER283 SER284 LEU285 MET286 PRO287 GLN288 LYS289 LYS290 ASN291 PRO292 ASP293 SER294 LEU295 GLU296 LEU297 ILE298 ARG299 SER300 LYS301 ALA302 GLY303 ARG304 VAL305 PHE306 GLY307 ARG308 LEU309 ALA310 SER311 ILE312 LEU313 MET314 VAL315 LEU316 LYS317 GLY318 LEU319 PRO320 SER321 THR322 TYR323 ASN324 LYS325 ASP326 LEU327 GLN328 GLU329 ASP330 LYS331 GLU332 ALA333 VAL334 PHE335 ASP336 VAL337 VAL338 ASP339 THR340 LEU341 THR342 ALA343 VAL344 LEU345 GLN346 VAL347 ALA348 THR349 GLY350 VAL351 ILE352 SER353 THR354 LEU355 GLN356 ILE357 SER358 LYS359 GLU360 ASN361 MET362 GLU363 LYS364 ALA365 LEU366 THR367 PRO368 GLU369 MET370 LEU371 ALA372 THR373 ASP374 LEU375 ALA376 LEU377 TYR378 LEU379 VAL380 ARG381 LYS382 GLY383 VAL384 PRO385 PHE386 ARG387 GLN388 ALA389 HIS390 THR391 ALA392 SER393 GLY394 LYS395 ALA396 VAL397 HIS398 LEU399 ALA400 GLU401 THR402 LYS403 GLY404 ILE405 THR406 ILE407 ASN408 LYS409 LEU410 SER411 LEU412 GLU413 ASP414 LEU415 LYS416 SER417 ILE418 SER419 PRO420 GLN421 PHE422 SER423 SER424 ASP425 VAL426 SER427 GLN428 VAL429 PHE430 ASN431 PHE432 VAL433 ASN434 SER435 VAL436 GLU437 GLN438 TYR439 THR440 ALA441 LEU442 ALA443 GLY444 THR445 ALA446 LYS447 SER448 SER449 VAL450 THR451 THR452 GLN453 ILE454 GLU455 GLN456 LEU457 ARG458 GLU459 LEU460 MET461 LYS462 LYS463 GLN464 LYS465 GLU466 GLN467
Ligands
Unit 5 AS11004
Unit 6 AS11003
Unit 7 AS11001
Unit 8 AS11002
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany