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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN GDP-D-MANNOSE 4,6-DEHYDRATASE
Keywords STRUCTURAL GENOMICS CONSORTIUM, ROSSMAN-FOLD, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, SDR, STRUCTURAL GENOMICS,LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1T2A     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GDP-MANNOSE 4,6 DEHYDRATASE  A 338 2718 0
2  Protein   GDP-MANNOSE 4,6 DEHYDRATASE  B 338 2718 0
3  Protein   GDP-MANNOSE 4,6 DEHYDRATASE  C 338 2718 0
4  Protein   GDP-MANNOSE 4,6 DEHYDRATASE  D 337 2710 0
5  Ligand   GDP-MANNOSE 4,6 DEHYDRATASE  A 2 0 76
6  Ligand   GDP-MANNOSE 4,6 DEHYDRATASE  B 2 0 76
7  Ligand   GDP-MANNOSE 4,6 DEHYDRATASE  C 2 0 76
8  Ligand   GDP-MANNOSE 4,6 DEHYDRATASE  D 2 0 76
9 Water     998 0 998
total       2357 10864 1302
Proteins
Unit 1 ARG23 ASN24 VAL25 ALA26 LEU27 ILE28 THR29 GLY30 ILE31 THR32 GLY33 GLN34 ASP35 GLY36 SER37 TYR38 LEU39 ALA40 GLU41 PHE42 LEU43 LEU44 GLU45 LYS46 GLY47 TYR48 GLU49 VAL50 HIS51 GLY52 ILE53 VAL54 ARG55 ARG56 SER57 SER58 SER59 PHE60 ASN61 THR62 GLY63 ARG64 ILE65 GLU66 HIS67 LEU68 TYR69 ASN79 MET80 LYS81 LEU82 HIS83 TYR84 GLY85 ASP86 LEU87 THR88 ASP89 SER90 THR91 CYS92 LEU93 VAL94 LYS95 ILE96 ILE97 ASN98 GLU99 VAL100 LYS101 PRO102 THR103 GLU104 ILE105 TYR106 ASN107 LEU108 GLY109 ALA110 GLN111 SER112 HIS113 VAL114 LYS115 ILE116 SER117 PHE118 ASP119 LEU120 ALA121 GLU122 TYR123 THR124 ALA125 ASP126 VAL127 ASP128 GLY129 VAL130 GLY131 THR132 LEU133 ARG134 LEU135 LEU136 ASP137 ALA138 VAL139 LYS140 THR141 CYS142 GLY143 LEU144 ILE145 ASN146 SER147 VAL148 LYS149 PHE150 TYR151 GLN152 ALA153 SER154 THR155 SER156 GLU157 LEU158 TYR159 GLY160 LYS161 VAL162 GLN163 GLU164 ILE165 PRO166 GLN167 LYS168 GLU169 THR170 THR171 PRO172 PHE173 TYR174 PRO175 ARG176 SER177 PRO178 TYR179 GLY180 ALA181 ALA182 LYS183 LEU184 TYR185 ALA186 TYR187 TRP188 ILE189 VAL190 VAL191 ASN192 PHE193 ARG194 GLU195 ALA196 TYR197 ASN198 LEU199 PHE200 ALA201 VAL202 ASN203 GLY204 ILE205 LEU206 PHE207 ASN208 HIS209 GLU210 SER211 PRO212 ARG213 ARG214 GLY215 ALA216 ASN217 PHE218 VAL219 THR220 ARG221 LYS222 ILE223 SER224 ARG225 SER226 VAL227 ALA228 LYS229 ILE230 TYR231 LEU232 GLY233 GLN234 LEU235 GLU236 CYS237 PHE238 SER239 LEU240 GLY241 ASN242 LEU243 ASP244 ALA245 LYS246 ARG247 ASP248 TRP249 GLY250 HIS251 ALA252 LYS253 ASP254 TYR255 VAL256 GLU257 ALA258 MET259 TRP260 LEU261 MET262 LEU263 GLN264 ASN265 ASP266 GLU267 PRO268 GLU269 ASP270 PHE271 VAL272 ILE273 ALA274 THR275 GLY276 GLU277 VAL278 HIS279 SER280 VAL281 ARG282 GLU283 PHE284 VAL285 GLU286 LYS287 SER288 PHE289 LEU290 HIS291 ILE292 GLY293 LYS294 THR295 ILE296 VAL297 TRP298 GLU299 GLY300 LYS301 ASN302 GLU303 ASN304 GLU305 VAL306 GLY307 ARG308 CYS309 LYS310 GLU311 THR312 GLY313 LYS314 VAL315 HIS316 VAL317 THR318 VAL319 ASP320 LEU321 LYS322 TYR323 TYR324 ARG325 PRO326 THR327 GLU328 VAL329 ASP330 PHE331 LEU332 GLN333 GLY334 ASP335 CYS336 THR337 LYS338 ALA339 LYS340 GLN341 LYS342 LEU343 ASN344 TRP345 LYS346 PRO347 ARG348 VAL349 ALA350 PHE351 ASP352 GLU353 LEU354 VAL355 ARG356 GLU357 MET358 VAL359 HIS360 ALA361 ASP362 VAL363 GLU364 LEU365 MET366 ARG367 THR368 ASN369
Unit 2 ARG23 ASN24 VAL25 ALA26 LEU27 ILE28 THR29 GLY30 ILE31 THR32 GLY33 GLN34 ASP35 GLY36 SER37 TYR38 LEU39 ALA40 GLU41 PHE42 LEU43 LEU44 GLU45 LYS46 GLY47 TYR48 GLU49 VAL50 HIS51 GLY52 ILE53 VAL54 ARG55 ARG56 SER57 SER58 SER59 PHE60 ASN61 THR62 GLY63 ARG64 ILE65 GLU66 HIS67 LEU68 TYR69 ASN79 MET80 LYS81 LEU82 HIS83 TYR84 GLY85 ASP86 LEU87 THR88 ASP89 SER90 THR91 CYS92 LEU93 VAL94 LYS95 ILE96 ILE97 ASN98 GLU99 VAL100 LYS101 PRO102 THR103 GLU104 ILE105 TYR106 ASN107 LEU108 GLY109 ALA110 GLN111 SER112 HIS113 VAL114 LYS115 ILE116 SER117 PHE118 ASP119 LEU120 ALA121 GLU122 TYR123 THR124 ALA125 ASP126 VAL127 ASP128 GLY129 VAL130 GLY131 THR132 LEU133 ARG134 LEU135 LEU136 ASP137 ALA138 VAL139 LYS140 THR141 CYS142 GLY143 LEU144 ILE145 ASN146 SER147 VAL148 LYS149 PHE150 TYR151 GLN152 ALA153 SER154 THR155 SER156 GLU157 LEU158 TYR159 GLY160 LYS161 VAL162 GLN163 GLU164 ILE165 PRO166 GLN167 LYS168 GLU169 THR170 THR171 PRO172 PHE173 TYR174 PRO175 ARG176 SER177 PRO178 TYR179 GLY180 ALA181 ALA182 LYS183 LEU184 TYR185 ALA186 TYR187 TRP188 ILE189 VAL190 VAL191 ASN192 PHE193 ARG194 GLU195 ALA196 TYR197 ASN198 LEU199 PHE200 ALA201 VAL202 ASN203 GLY204 ILE205 LEU206 PHE207 ASN208 HIS209 GLU210 SER211 PRO212 ARG213 ARG214 GLY215 ALA216 ASN217 PHE218 VAL219 THR220 ARG221 LYS222 ILE223 SER224 ARG225 SER226 VAL227 ALA228 LYS229 ILE230 TYR231 LEU232 GLY233 GLN234 LEU235 GLU236 CYS237 PHE238 SER239 LEU240 GLY241 ASN242 LEU243 ASP244 ALA245 LYS246 ARG247 ASP248 TRP249 GLY250 HIS251 ALA252 LYS253 ASP254 TYR255 VAL256 GLU257 ALA258 MET259 TRP260 LEU261 MET262 LEU263 GLN264 ASN265 ASP266 GLU267 PRO268 GLU269 ASP270 PHE271 VAL272 ILE273 ALA274 THR275 GLY276 GLU277 VAL278 HIS279 SER280 VAL281 ARG282 GLU283 PHE284 VAL285 GLU286 LYS287 SER288 PHE289 LEU290 HIS291 ILE292 GLY293 LYS294 THR295 ILE296 VAL297 TRP298 GLU299 GLY300 LYS301 ASN302 GLU303 ASN304 GLU305 VAL306 GLY307 ARG308 CYS309 LYS310 GLU311 THR312 GLY313 LYS314 VAL315 HIS316 VAL317 THR318 VAL319 ASP320 LEU321 LYS322 TYR323 TYR324 ARG325 PRO326 THR327 GLU328 VAL329 ASP330 PHE331 LEU332 GLN333 GLY334 ASP335 CYS336 THR337 LYS338 ALA339 LYS340 GLN341 LYS342 LEU343 ASN344 TRP345 LYS346 PRO347 ARG348 VAL349 ALA350 PHE351 ASP352 GLU353 LEU354 VAL355 ARG356 GLU357 MET358 VAL359 HIS360 ALA361 ASP362 VAL363 GLU364 LEU365 MET366 ARG367 THR368 ASN369
Unit 3 ARG23 ASN24 VAL25 ALA26 LEU27 ILE28 THR29 GLY30 ILE31 THR32 GLY33 GLN34 ASP35 GLY36 SER37 TYR38 LEU39 ALA40 GLU41 PHE42 LEU43 LEU44 GLU45 LYS46 GLY47 TYR48 GLU49 VAL50 HIS51 GLY52 ILE53 VAL54 ARG55 ARG56 SER57 SER58 SER59 PHE60 ASN61 THR62 GLY63 ARG64 ILE65 GLU66 HIS67 LEU68 TYR69 ASN79 MET80 LYS81 LEU82 HIS83 TYR84 GLY85 ASP86 LEU87 THR88 ASP89 SER90 THR91 CYS92 LEU93 VAL94 LYS95 ILE96 ILE97 ASN98 GLU99 VAL100 LYS101 PRO102 THR103 GLU104 ILE105 TYR106 ASN107 LEU108 GLY109 ALA110 GLN111 SER112 HIS113 VAL114 LYS115 ILE116 SER117 PHE118 ASP119 LEU120 ALA121 GLU122 TYR123 THR124 ALA125 ASP126 VAL127 ASP128 GLY129 VAL130 GLY131 THR132 LEU133 ARG134 LEU135 LEU136 ASP137 ALA138 VAL139 LYS140 THR141 CYS142 GLY143 LEU144 ILE145 ASN146 SER147 VAL148 LYS149 PHE150 TYR151 GLN152 ALA153 SER154 THR155 SER156 GLU157 LEU158 TYR159 GLY160 LYS161 VAL162 GLN163 GLU164 ILE165 PRO166 GLN167 LYS168 GLU169 THR170 THR171 PRO172 PHE173 TYR174 PRO175 ARG176 SER177 PRO178 TYR179 GLY180 ALA181 ALA182 LYS183 LEU184 TYR185 ALA186 TYR187 TRP188 ILE189 VAL190 VAL191 ASN192 PHE193 ARG194 GLU195 ALA196 TYR197 ASN198 LEU199 PHE200 ALA201 VAL202 ASN203 GLY204 ILE205 LEU206 PHE207 ASN208 HIS209 GLU210 SER211 PRO212 ARG213 ARG214 GLY215 ALA216 ASN217 PHE218 VAL219 THR220 ARG221 LYS222 ILE223 SER224 ARG225 SER226 VAL227 ALA228 LYS229 ILE230 TYR231 LEU232 GLY233 GLN234 LEU235 GLU236 CYS237 PHE238 SER239 LEU240 GLY241 ASN242 LEU243 ASP244 ALA245 LYS246 ARG247 ASP248 TRP249 GLY250 HIS251 ALA252 LYS253 ASP254 TYR255 VAL256 GLU257 ALA258 MET259 TRP260 LEU261 MET262 LEU263 GLN264 ASN265 ASP266 GLU267 PRO268 GLU269 ASP270 PHE271 VAL272 ILE273 ALA274 THR275 GLY276 GLU277 VAL278 HIS279 SER280 VAL281 ARG282 GLU283 PHE284 VAL285 GLU286 LYS287 SER288 PHE289 LEU290 HIS291 ILE292 GLY293 LYS294 THR295 ILE296 VAL297 TRP298 GLU299 GLY300 LYS301 ASN302 GLU303 ASN304 GLU305 VAL306 GLY307 ARG308 CYS309 LYS310 GLU311 THR312 GLY313 LYS314 VAL315 HIS316 VAL317 THR318 VAL319 ASP320 LEU321 LYS322 TYR323 TYR324 ARG325 PRO326 THR327 GLU328 VAL329 ASP330 PHE331 LEU332 GLN333 GLY334 ASP335 CYS336 THR337 LYS338 ALA339 LYS340 GLN341 LYS342 LEU343 ASN344 TRP345 LYS346 PRO347 ARG348 VAL349 ALA350 PHE351 ASP352 GLU353 LEU354 VAL355 ARG356 GLU357 MET358 VAL359 HIS360 ALA361 ASP362 VAL363 GLU364 LEU365 MET366 ARG367 THR368 ASN369
Unit 4 ARG23 ASN24 VAL25 ALA26 LEU27 ILE28 THR29 GLY30 ILE31 THR32 GLY33 GLN34 ASP35 GLY36 SER37 TYR38 LEU39 ALA40 GLU41 PHE42 LEU43 LEU44 GLU45 LYS46 GLY47 TYR48 GLU49 VAL50 HIS51 GLY52 ILE53 VAL54 ARG55 ARG56 SER57 SER58 SER59 PHE60 ASN61 THR62 GLY63 ARG64 ILE65 GLU66 HIS67 LEU68 TYR69 ASN79 MET80 LYS81 LEU82 HIS83 TYR84 GLY85 ASP86 LEU87 THR88 ASP89 SER90 THR91 CYS92 LEU93 VAL94 LYS95 ILE96 ILE97 ASN98 GLU99 VAL100 LYS101 PRO102 THR103 GLU104 ILE105 TYR106 ASN107 LEU108 GLY109 ALA110 GLN111 SER112 HIS113 VAL114 LYS115 ILE116 SER117 PHE118 ASP119 LEU120 ALA121 GLU122 TYR123 THR124 ALA125 ASP126 VAL127 ASP128 GLY129 VAL130 GLY131 THR132 LEU133 ARG134 LEU135 LEU136 ASP137 ALA138 VAL139 LYS140 THR141 CYS142 GLY143 LEU144 ILE145 ASN146 SER147 VAL148 LYS149 PHE150 TYR151 GLN152 ALA153 SER154 THR155 SER156 GLU157 LEU158 TYR159 GLY160 LYS161 VAL162 GLN163 GLU164 ILE165 PRO166 GLN167 LYS168 GLU169 THR170 THR171 PRO172 PHE173 TYR174 PRO175 ARG176 SER177 PRO178 TYR179 GLY180 ALA181 ALA182 LYS183 LEU184 TYR185 ALA186 TYR187 TRP188 ILE189 VAL190 VAL191 ASN192 PHE193 ARG194 GLU195 ALA196 TYR197 ASN198 LEU199 PHE200 ALA201 VAL202 ASN203 GLY204 ILE205 LEU206 PHE207 ASN208 HIS209 GLU210 SER211 PRO212 ARG213 ARG214 GLY215 ALA216 ASN217 PHE218 VAL219 THR220 ARG221 LYS222 ILE223 SER224 ARG225 SER226 VAL227 ALA228 LYS229 ILE230 TYR231 LEU232 GLY233 GLN234 LEU235 GLU236 CYS237 PHE238 SER239 LEU240 GLY241 ASN242 LEU243 ASP244 ALA245 LYS246 ARG247 ASP248 TRP249 GLY250 HIS251 ALA252 LYS253 ASP254 TYR255 VAL256 GLU257 ALA258 MET259 TRP260 LEU261 MET262 LEU263 GLN264 ASN265 ASP266 GLU267 PRO268 GLU269 ASP270 PHE271 VAL272 ILE273 ALA274 THR275 GLY276 GLU277 VAL278 HIS279 SER280 VAL281 ARG282 GLU283 PHE284 VAL285 GLU286 LYS287 SER288 PHE289 LEU290 HIS291 ILE292 GLY293 LYS294 THR295 ILE296 VAL297 TRP298 GLU299 GLY300 LYS301 ASN302 GLU303 ASN304 GLU305 VAL306 GLY307 ARG308 CYS309 LYS310 GLU311 THR312 GLY313 LYS314 VAL315 HIS316 VAL317 THR318 VAL319 ASP320 LEU321 LYS322 TYR323 TYR324 ARG325 PRO326 THR327 GLU328 VAL329 ASP330 PHE331 LEU332 GLN333 GLY334 ASP335 CYS336 THR337 LYS338 ALA339 LYS340 GLN341 LYS342 LEU343 ASN344 TRP345 LYS346 PRO347 ARG348 VAL349 ALA350 PHE351 ASP352 GLU353 LEU354 VAL355 ARG356 GLU357 MET358 VAL359 HIS360 ALA361 ASP362 VAL363 GLU364 LEU365 MET366 ARG367 THR368
Ligands
Unit 5 NDP1001 GDP1002
Unit 6 NDP1101 GDP1102
Unit 7 NDP1201 GDP1202
Unit 8 NDP1301 GDP1302
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany