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Sequence, Chains, Asymmetric and Biological Units

Title MODEL OF THE BACTERIAL RNA POLYMERASE OPEN COMPLEX WITH THE SUBSTRATE AND PPGPP BOUND
Keywords BACTERIAL MULTISUBUNIT RNA POLYMERASE, OPEN COMPLEX, SUBSTRATE, PPGPP
Experiment theoretical model
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1T0X     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   DNA (49-MER)  D 49 993 0
2  Other macromolecule   DNA (49-MER)  E 49 1012 0
3  RNA    F 8 171 0
4  Protein   BACTERIAL RNAP POLYMERASE, CHAINS ALPHA-DIMER, BETA, BETA', OMEGA, SIGMA  K 229 1807 0
5  Protein   BACTERIAL RNAP POLYMERASE, CHAINS ALPHA-DIMER, BETA, BETA', OMEGA, SIGMA  L 229 1807 0
6  Protein   INCOMING ATP SUBSTRATE  M 1119 8829 0
7  Protein   PPGPP  N 1392 10802 0
8  Protein    O 95 770 0
9  Protein    P 345 2772 0
10  Ligand    C 1 0 31
11  Ligand    X 1 0 36
12  Ligand    Y 3 0 3
total       3520 28963 70
Proteins
Unit 4 MET1 LEU2 ASP3 SER4 LYS5 LEU6 LYS7 ALA8 PRO9 VAL10 PHE11 THR12 VAL13 ARG14 THR15 GLN16 GLY17 ARG18 GLU19 TYR20 GLY21 GLU22 PHE23 VAL24 LEU25 GLU26 PRO27 LEU28 GLU29 ARG30 GLY31 PHE32 GLY33 VAL34 THR35 LEU36 GLY37 ASN38 PRO39 LEU40 ARG41 ARG42 ILE43 LEU44 LEU45 SER46 SER47 ILE48 PRO49 GLY50 THR51 ALA52 VAL53 THR54 SER55 VAL56 TYR57 ILE58 GLU59 ASP60 VAL61 LEU62 HIS63 GLU64 PHE65 SER66 THR67 ILE68 PRO69 GLY70 VAL71 LYS72 GLU73 ASP74 VAL75 VAL76 GLU77 ILE78 ILE79 LEU80 ASN81 LEU82 LYS83 GLU84 LEU85 VAL86 VAL87 ARG88 PHE89 LEU90 ASN91 PRO92 SER93 LEU94 GLN95 THR96 VAL97 THR98 LEU99 LEU100 LEU101 LYS102 ALA103 GLU104 GLY105 PRO106 LYS107 GLU108 VAL109 LYS110 ALA111 ARG112 ASP113 PHE114 LEU115 PRO116 VAL117 ALA118 ASP119 VAL120 GLU121 ILE122 MET123 ASN124 PRO125 ASP126 LEU127 HIS128 ILE129 ALA130 THR131 LEU132 GLU133 GLU134 GLY135 GLY136 ARG137 LEU138 ASN139 MET140 GLU141 VAL142 ARG143 VAL144 ASP145 ARG146 GLY147 VAL148 GLY149 TYR150 VAL151 PRO152 ALA153 GLU154 LYS155 HIS156 GLY157 ILE158 LYS159 ASP160 ARG161 ILE162 ASN163 ALA164 ILE165 PRO166 VAL167 ASP168 ALA169 VAL170 PHE171 SER172 PRO173 VAL174 ARG175 ARG176 VAL177 ALA178 PHE179 GLN180 VAL181 GLU182 ASP183 THR184 ARG185 LEU186 GLY187 GLN188 ARG189 THR190 ASP191 LEU192 ASP193 LYS194 LEU195 THR196 LEU197 ARG198 ILE199 TRP200 THR201 ASP202 GLY203 SER204 VAL205 THR206 PRO207 LEU208 GLU209 ALA210 LEU211 ASN212 GLN213 ALA214 VAL215 GLU216 ILE217 LEU218 ARG219 GLU220 HIS221 LEU222 THR223 TYR224 PHE225 SER226 ASN227 PRO228 GLN229
Unit 5 MET1 LEU2 ASP3 SER4 LYS5 LEU6 LYS7 ALA8 PRO9 VAL10 PHE11 THR12 VAL13 ARG14 THR15 GLN16 GLY17 ARG18 GLU19 TYR20 GLY21 GLU22 PHE23 VAL24 LEU25 GLU26 PRO27 LEU28 GLU29 ARG30 GLY31 PHE32 GLY33 VAL34 THR35 LEU36 GLY37 ASN38 PRO39 LEU40 ARG41 ARG42 ILE43 LEU44 LEU45 SER46 SER47 ILE48 PRO49 GLY50 THR51 ALA52 VAL53 THR54 SER55 VAL56 TYR57 ILE58 GLU59 ASP60 VAL61 LEU62 HIS63 GLU64 PHE65 SER66 THR67 ILE68 PRO69 GLY70 VAL71 LYS72 GLU73 ASP74 VAL75 VAL76 GLU77 ILE78 ILE79 LEU80 ASN81 LEU82 LYS83 GLU84 LEU85 VAL86 VAL87 ARG88 PHE89 LEU90 ASN91 PRO92 SER93 LEU94 GLN95 THR96 VAL97 THR98 LEU99 LEU100 LEU101 LYS102 ALA103 GLU104 GLY105 PRO106 LYS107 GLU108 VAL109 LYS110 ALA111 ARG112 ASP113 PHE114 LEU115 PRO116 VAL117 ALA118 ASP119 VAL120 GLU121 ILE122 MET123 ASN124 PRO125 ASP126 LEU127 HIS128 ILE129 ALA130 THR131 LEU132 GLU133 GLU134 GLY135 GLY136 ARG137 LEU138 ASN139 MET140 GLU141 VAL142 ARG143 VAL144 ASP145 ARG146 GLY147 VAL148 GLY149 TYR150 VAL151 PRO152 ALA153 GLU154 LYS155 HIS156 GLY157 ILE158 LYS159 ASP160 ARG161 ILE162 ASN163 ALA164 ILE165 PRO166 VAL167 ASP168 ALA169 VAL170 PHE171 SER172 PRO173 VAL174 ARG175 ARG176 VAL177 ALA178 PHE179 GLN180 VAL181 GLU182 ASP183 THR184 ARG185 LEU186 GLY187 GLN188 ARG189 THR190 ASP191 LEU192 ASP193 LYS194 LEU195 THR196 LEU197 ARG198 ILE199 TRP200 THR201 ASP202 GLY203 SER204 VAL205 THR206 PRO207 LEU208 GLU209 ALA210 LEU211 ASN212 GLN213 ALA214 VAL215 GLU216 ILE217 LEU218 ARG219 GLU220 HIS221 LEU222 THR223 TYR224 PHE225 SER226 ASN227 PRO228 GLN229
Unit 6 MET1 GLU2 ILE3 LYS4 ARG5 PHE6 GLY7 ARG8 ILE9 ARG10 GLU11 VAL12 ILE13 PRO14 LEU15 PRO16 PRO17 LEU18 THR19 GLU20 ILE21 GLN22 VAL23 GLU24 SER25 TYR26 ARG27 ARG28 ALA29 LEU30 GLN31 ALA32 ASP33 VAL34 PRO35 PRO36 GLU37 LYS38 ARG39 GLU40 ASN41 VAL42 GLY43 ILE44 GLN45 ALA46 ALA47 PHE48 ARG49 GLU50 THR51 PHE52 PRO53 ILE54 GLU55 GLU56 GLU57 ASP58 LYS59 GLY60 LYS61 GLY62 GLY63 LEU64 VAL65 LEU66 ASP67 PHE68 LEU69 GLU70 TYR71 ARG72 LEU73 GLY74 GLU75 PRO76 PRO77 PHE78 PRO79 GLN80 ASP81 GLU82 CYS83 ARG84 GLU85 LYS86 ASP87 LEU88 THR89 TYR90 GLN91 ALA92 PRO93 LEU94 TYR95 ALA96 ARG97 LEU98 GLN99 LEU100 ILE101 HIS102 LYS103 ASP104 THR105 GLY106 LEU107 ILE108 LYS109 GLU110 ASP111 GLU112 VAL113 PHE114 LEU115 GLY116 HIS117 ILE118 PRO119 LEU120 MET121 THR122 GLU123 ASP124 GLY125 SER126 PHE127 ILE128 ILE129 ASN130 GLY131 ALA132 ASP133 ARG134 VAL135 ILE136 VAL137 SER138 GLN139 ILE140 HIS141 ARG142 SER143 PRO144 GLY145 VAL146 TYR147 PHE148 THR149 PRO150 ASP151 PRO152 ALA153 ARG154 PRO155 GLY156 ARG157 TYR158 ILE159 ALA160 SER161 ILE162 ILE163 PRO164 LEU165 PRO166 LYS167 ARG168 GLY169 PRO170 TRP171 ILE172 ASP173 LEU174 GLU175 VAL176 GLU177 PRO178 ASN179 GLY180 VAL181 VAL182 SER183 MET184 LYS185 VAL186 ASN187 LYS188 ARG189 LYS190 PHE191 PRO192 LEU193 VAL194 LEU195 LEU196 LEU197 ARG198 VAL199 LEU200 GLY201 TYR202 ASP203 GLN204 GLU205 THR206 LEU207 ALA208 ARG209 GLU210 LEU211 GLY212 ALA213 TYR214 GLY215 GLU216 LEU217 VAL218 GLN219 GLY220 LEU221 MET222 ASP223 GLU224 SER225 VAL226 PHE227 ALA228 MET229 ARG230 PRO231 GLU232 GLU233 ALA234 LEU235 ILE236 ARG237 LEU238 PHE239 THR240 LEU241 LEU242 ARG243 PRO244 GLY245 ASP246 PRO247 PRO248 LYS249 ARG250 ASP251 LYS252 ALA253 VAL254 ALA255 TYR256 VAL257 TYR258 GLY259 LEU260 ILE261 ALA262 ASP263 PRO264 ARG265 ARG266 TYR267 ASP268 LEU269 GLY270 GLU271 ALA272 GLY273 ARG274 TYR275 LYS276 ALA277 GLU278 GLU279 LYS280 LEU281 GLY282 ILE283 ARG284 LEU285 SER286 GLY287 ARG288 THR289 LEU290 ALA291 ARG292 PHE293 GLU294 ASP295 GLY296 GLU297 PHE298 LYS299 ASP300 GLU301 VAL302 PHE303 LEU304 PRO305 THR306 LEU307 ARG308 TYR309 LEU310 PHE311 ALA312 LEU313 THR314 ALA315 GLY316 VAL317 PRO318 GLY319 HIS320 GLU321 VAL322 ASP323 ASP324 ILE325 ASP326 HIS327 LEU328 GLY329 ASN330 ARG331 ARG332 ILE333 ARG334 THR335 VAL336 GLY337 GLU338 LEU339 MET340 THR341 ASP342 GLN343 PHE344 ARG345 VAL346 GLY347 LEU348 ALA349 ARG350 LEU351 ALA352 ARG353 GLY354 VAL355 ARG356 GLU357 ARG358 MET359 LEU360 MET361 GLY362 SER363 GLU364 ASP365 SER366 LEU367 THR368 PRO369 ALA370 LYS371 LEU372 VAL373 ASN374 SER375 ARG376 PRO377 LEU378 GLU379 ALA380 ALA381 ILE382 ARG383 GLU384 PHE385 PHE386 SER387 ARG388 SER389 GLN390 LEU391 SER392 GLN393 PHE394 LYS395 ASP396 GLU397 THR398 ASN399 PRO400 LEU401 SER402 SER403 LEU404 ARG405 HIS406 LYS407 ARG408 ARG409 ILE410 SER411 ALA412 LEU413 GLY414 PRO415 GLY416 GLY417 LEU418 THR419 ARG420 GLU421 ARG422 ALA423 GLY424 PHE425 ASP426 VAL427 ARG428 ASP429 VAL430 HIS431 ARG432 THR433 HIS434 TYR435 GLY436 ARG437 ILE438 CYS439 PRO440 VAL441 GLU442 THR443 PRO444 GLU445 GLY446 ALA447 ASN448 ILE449 GLY450 LEU451 ILE452 THR453 SER454 LEU455 ALA456 ALA457 TYR458 ALA459 ARG460 VAL461 ASP462 GLU463 LEU464 GLY465 PHE466 ILE467 ARG468 THR469 PRO470 TYR471 ARG472 ARG473 VAL474 VAL475 GLY476 GLY477 VAL478 VAL479 THR480 ASP481 GLU482 VAL483 VAL484 TYR485 MET486 THR487 ALA488 THR489 GLU490 GLU491 ASP492 ARG493 TYR494 THR495 ILE496 ALA497 GLN498 ALA499 ASN500 THR501 PRO502 LEU503 GLU504 GLY505 ASN506 ARG507 ILE508 ALA509 ALA510 GLU511 ARG512 VAL513 VAL514 ALA515 ARG516 ARG517 LYS518 GLY519 GLU520 PRO521 VAL522 ILE523 VAL524 SER525 PRO526 GLU527 GLU528 VAL529 GLU530 PHE531 MET532 ASP533 VAL534 SER535 PRO536 LYS537 GLN538 VAL539 PHE540 SER541 VAL542 ASN543 THR544 ASN545 LEU546 ILE547 PRO548 PHE549 LEU550 GLU551 HIS552 ASP553 ASP554 ALA555 ASN556 ARG557 ALA558 LEU559 MET560 GLY561 SER562 ASN563 MET564 GLN565 THR566 GLN567 ALA568 VAL569 PRO570 LEU571 ILE572 ARG573 ALA574 GLN575 ALA576 PRO577 VAL578 VAL579 MET580 THR581 GLY582 LEU583 GLU584 GLU585 ARG586 VAL587 VAL588 ARG589 ASP590 SER591 LEU592 ALA593 ALA594 LEU595 TYR596 ALA597 GLU598 GLU599 ASP600 GLY601 GLU602 VAL603 ALA604 LYS605 VAL606 ASP607 GLY608 ASN609 ARG610 ILE611 VAL612 VAL613 ARG614 TYR615 GLU616 ASP617 GLY618 ARG619 LEU620 VAL621 GLU622 TYR623 PRO624 LEU625 ARG626 ARG627 PHE628 TYR629 ARG630 SER631 ASN632 GLN633 GLY634 THR635 ALA636 LEU637 ASP638 GLN639 ARG640 PRO641 ARG642 VAL643 VAL644 VAL645 GLY646 GLN647 ARG648 VAL649 ARG650 LYS651 GLY652 ASP653 LEU654 LEU655 ALA656 ASP657 GLY658 PRO659 ALA660 SER661 GLU662 ASN663 GLY664 PHE665 LEU666 ALA667 LEU668 GLY669 GLN670 ASN671 VAL672 LEU673 VAL674 ALA675 ILE676 MET677 PRO678 PHE679 ASP680 GLY681 TYR682 ASN683 PHE684 GLU685 ASP686 ALA687 ILE688 VAL689 ILE690 SER691 GLU692 GLU693 LEU694 LEU695 LYS696 ARG697 ASP698 PHE699 TYR700 THR701 SER702 ILE703 HIS704 ILE705 GLU706 ARG707 TYR708 GLU709 ILE710 GLU711 ALA712 ARG713 ASP714 THR715 LYS716 LEU717 GLY718 PRO719 GLU720 ARG721 ILE722 THR723 ARG724 ASP725 ILE726 PRO727 HIS728 LEU729 SER730 GLU731 ALA732 ALA733 LEU734 ARG735 ASP736 LEU737 ASP738 GLU739 GLU740 GLY741 VAL742 VAL743 ARG744 ILE745 GLY746 ALA747 GLU748 VAL749 LYS750 PRO751 GLY752 ASP753 ILE754 LEU755 VAL756 GLY757 ARG758 THR759 SER760 PHE761 LYS762 GLY763 GLU764 SER765 GLU766 PRO767 THR768 PRO769 GLU770 GLU771 ARG772 LEU773 LEU774 ARG775 SER776 ILE777 PHE778 GLY779 GLU780 LYS781 ALA782 ARG783 ASP784 VAL785 LYS786 ASP787 THR788 SER789 LEU790 ARG791 VAL792 PRO793 PRO794 GLY795 GLU796 GLY797 GLY798 ILE799 VAL800 VAL801 ARG802 THR803 VAL804 ARG805 LEU806 ARG807 ARG808 GLY809 ASP810 PRO811 GLY812 VAL813 GLU814 LEU815 LYS816 PRO817 GLY818 VAL819 ARG820 GLU821 VAL822 VAL823 ARG824 VAL825 TYR826 VAL827 ALA828 GLN829 LYS830 ARG831 LYS832 LEU833 GLN834 VAL835 GLY836 ASP837 LYS838 LEU839 ALA840 ASN841 ARG842 HIS843 GLY844 ASN845 LYS846 GLY847 VAL848 VAL849 ALA850 LYS851 ILE852 LEU853 PRO854 VAL855 GLU856 ASP857 MET858 PRO859 HIS860 LEU861 PRO862 ASP863 GLY864 THR865 PRO866 VAL867 ASP868 VAL869 ILE870 LEU871 ASN872 PRO873 LEU874 GLY875 VAL876 PRO877 SER878 ARG879 MET880 ASN881 LEU882 GLY883 GLN884 ILE885 LEU886 GLU887 THR888 HIS889 LEU890 GLY891 LEU892 ALA893 GLY894 TYR895 PHE896 LEU897 GLY898 GLN899 ARG900 TYR901 ILE902 SER903 PRO904 ILE905 PHE906 ASP907 GLY908 ALA909 LYS910 GLU911 PRO912 GLU913 ILE914 LYS915 GLU916 LEU917 LEU918 ALA919 GLN920 ALA921 PHE922 GLU923 VAL924 TYR925 PHE926 GLY927 LYS928 ARG929 LYS930 GLY931 GLU932 GLY933 PHE934 GLY935 VAL936 ASP937 LYS938 ARG939 GLU940 VAL941 GLU942 VAL943 LEU944 ARG945 ARG946 ALA947 GLU948 LYS949 LEU950 GLY951 LEU952 VAL953 THR954 PRO955 GLY956 LYS957 THR958 PRO959 GLU960 GLU961 GLN962 LEU963 LYS964 GLU965 LEU966 PHE967 LEU968 GLN969 GLY970 LYS971 VAL972 VAL973 LEU974 TYR975 ASP976 GLY977 ARG978 THR979 GLY980 GLU981 PRO982 ILE983 GLU984 GLY985 PRO986 ILE987 VAL988 VAL989 GLY990 GLN991 MET992 PHE993 ILE994 MET995 LYS996 LEU997 TYR998 HIS999 MET1000 VAL1001 GLU1002 ASP1003 LYS1004 MET1005 HIS1006 ALA1007 ARG1008 SER1009 THR1010 GLY1011 PRO1012 TYR1013 SER1014 LEU1015 ILE1016 THR1017 GLN1018 GLN1019 PRO1020 LEU1021 GLY1022 GLY1023 LYS1024 ALA1025 GLN1026 PHE1027 GLY1028 GLY1029 GLN1030 ARG1031 PHE1032 GLY1033 GLU1034 MET1035 GLU1036 VAL1037 TRP1038 ALA1039 LEU1040 GLU1041 ALA1042 TYR1043 GLY1044 ALA1045 ALA1046 HIS1047 THR1048 LEU1049 GLN1050 GLU1051 MET1052 LEU1053 THR1054 LEU1055 LYS1056 SER1057 ASP1058 ASP1059 ILE1060 GLU1061 GLY1062 ARG1063 ASN1064 ALA1065 ALA1066 TYR1067 GLU1068 ALA1069 ILE1070 ILE1071 LYS1072 GLY1073 GLU1074 ASP1075 VAL1076 PRO1077 GLU1078 PRO1079 SER1080 VAL1081 PRO1082 GLU1083 SER1084 PHE1085 ARG1086 VAL1087 LEU1088 VAL1089 LYS1090 GLU1091 LEU1092 GLN1093 ALA1094 LEU1095 ALA1096 LEU1097 ASP1098 VAL1099 GLN1100 THR1101 LEU1102 ASP1103 GLU1104 LYS1105 ASP1106 ASN1107 PRO1108 VAL1109 ASP1110 ILE1111 PHE1112 GLU1113 GLY1114 LEU1115 ALA1116 SER1117 LYS1118 ARG1119
Unit 7 LYS2 LYS3 GLU4 VAL5 ARG6 LYS7 VAL8 ARG9 ILE10 ALA11 LEU12 ALA13 SER14 PRO15 GLU16 LYS17 ILE18 ARG19 SER20 TRP21 SER22 TYR23 GLY24 GLU25 VAL26 GLU27 LYS28 PRO29 GLU30 THR31 ILE32 ASN33 TYR34 ARG35 THR36 LEU37 LYS38 PRO39 GLU40 ARG41 ASP42 GLY43 LEU44 PHE45 ASP46 GLU47 ARG48 ILE49 PHE50 GLY51 PRO52 ILE53 LYS54 ASP55 TYR56 GLU57 CYS58 ALA59 CYS60 GLY61 LYS62 TYR63 LYS64 ARG65 GLN66 ARG67 PHE68 GLU69 GLY70 LYS71 VAL72 CYS73 GLU74 ARG75 CYS76 GLY77 VAL78 GLU79 VAL80 THR81 LYS82 SER83 ILE84 VAL85 ARG86 ARG87 TYR88 ARG89 MET90 GLY91 HIS92 ILE93 GLU94 LEU95 ALA96 THR97 PRO98 ALA99 ALA100 HIS101 ILE102 TRP103 PHE104 VAL105 LYS106 ASP107 VAL108 PRO109 SER110 LYS111 ILE112 GLY113 THR114 LEU115 LEU116 ASP117 LEU118 SER119 ALA120 THR121 GLU122 LEU123 GLU124 GLN125 VAL126 LEU127 TYR128 PHE129 SER130 LYS131 TYR132 ILE133 VAL134 LEU135 ASP136 PRO137 LYS138 GLY139 ALA140 ILE141 LEU142 ASN143 GLY144 VAL145 PRO146 VAL147 GLU148 LYS149 ARG150 GLN151 LEU152 LEU153 THR154 ASP155 GLU156 GLU157 TYR158 ARG159 GLU160 LEU161 ARG162 TYR163 GLY164 LYS165 GLN166 GLU167 THR168 TYR169 PRO170 LEU171 PRO172 PRO173 GLY174 VAL175 ASP176 ALA177 LEU178 VAL179 LYS180 ASP181 GLY182 GLU183 GLU184 VAL185 VAL186 LYS187 GLY188 GLN189 GLU190 LEU191 ALA192 PRO193 GLY194 VAL195 VAL196 SER197 ARG198 LEU199 ASP200 GLY201 VAL202 ALA203 LEU204 TYR205 ARG206 PHE207 PRO208 ARG209 ARG210 VAL211 ARG212 VAL213 GLU214 TYR215 VAL216 ALA217 GLY218 ALA219 ALA220 ALA221 ALA222 GLY223 ALA224 ALA225 ALA226 ALA227 ALA228 ALA229 ALA230 ALA231 ALA232 ALA233 ALA234 ALA235 ALA236 ALA237 ALA238 ALA239 ALA240 ALA241 ALA242 ALA243 ALA244 ALA245 ALA246 ALA247 ALA248 ALA249 ALA250 ALA251 ALA364 ALA365 ALA366 ALA367 ALA368 ALA369 GLY370 ALA371 ALA372 ALA373 ALA374 ALA375 ALA376 ALA377 ALA378 ALA379 ALA380 ALA381 ALA382 ALA383 ALA384 ALA385 ALA386 GLY387 ALA388 GLU389 PRO390 ALA391 SER392 ILE393 LEU394 VAL395 VAL396 LYS397 ALA398 ARG399 VAL400 TYR401 PRO402 PHE403 GLU404 ASP405 ASP406 VAL407 GLU408 VAL409 SER410 THR411 GLY412 ASP413 ARG414 VAL415 ALA416 PRO417 GLY418 ASP419 VAL420 LEU421 ALA422 ASP423 GLY424 GLY425 LYS426 VAL427 LYS428 SER429 ASP430 VAL431 TYR432 GLY433 ARG434 VAL435 GLU436 VAL437 ASP438 LEU439 VAL440 ARG441 ASN442 VAL443 VAL444 ARG445 VAL446 VAL447 GLU448 SER449 TYR450 ASP451 ILE452 ASP453 ALA454 ARG455 MET456 GLY457 ALA458 GLU459 ALA460 ILE461 GLN462 GLN463 LEU464 LEU465 LYS466 GLU467 LEU468 ASP469 LEU470 GLU471 ALA472 LEU473 GLU474 LYS475 GLU476 LEU477 LEU478 GLU479 GLU480 MET481 LYS482 HIS483 PRO484 SER485 ARG486 ALA487 ARG488 ARG489 ALA490 LYS491 ALA492 ARG493 LYS494 ARG495 LEU496 GLU497 VAL498 VAL499 ARG500 ALA501 PHE502 LEU503 ASP504 SER505 GLY506 ASN507 ARG508 PRO509 GLU510 TRP511 MET512 ILE513 LEU514 GLU515 ALA516 VAL517 PRO518 VAL519 LEU520 PRO521 PRO522 ASP523 LEU524 ARG525 PRO526 MET527 VAL528 GLN529 VAL530 ASP531 GLY532 GLY533 ARG534 PHE535 ALA536 THR537 SER538 ASP539 LEU540 ASN541 ASP542 LEU543 TYR544 ARG545 ARG546 LEU547 ILE548 ASN549 ARG550 ASN551 ASN552 ARG553 LEU554 LYS555 LYS556 LEU557 LEU558 ALA559 GLN560 GLY561 ALA562 PRO563 GLU564 ILE565 ILE566 ILE567 ARG568 ASN569 GLU570 LYS571 ARG572 MET573 LEU574 GLN575 GLU576 ALA577 VAL578 ASP579 ALA580 LEU581 LEU582 ASP583 ASN584 GLY585 ARG586 ARG587 GLY588 ALA589 PRO590 VAL591 THR592 ASN593 PRO594 GLY595 SER596 ASP597 ARG598 PRO599 LEU600 ARG601 SER602 LEU603 THR604 ASP605 ILE606 LEU607 SER608 GLY609 LYS610 GLN611 GLY612 ARG613 PHE614 ARG615 GLN616 ASN617 LEU618 LEU619 GLY620 LYS621 ARG622 VAL623 ASP624 TYR625 SER626 GLY627 ARG628 SER629 VAL630 ILE631 VAL632 VAL633 GLY634 PRO635 GLN636 LEU637 LYS638 LEU639 HIS640 GLN641 CYS642 GLY643 LEU644 PRO645 LYS646 ARG647 MET648 ALA649 LEU650 GLU651 LEU652 PHE653 LYS654 PRO655 PHE656 LEU657 LEU658 LYS659 LYS660 MET661 GLU662 GLU663 LYS664 GLY665 ILE666 ALA667 PRO668 ASN669 VAL670 LYS671 ALA672 ALA673 ARG674 ARG675 MET676 LEU677 GLU678 ARG679 GLN680 ARG681 ASP682 ILE683 LYS684 ASP685 GLU686 VAL687 TRP688 ASP689 ALA690 LEU691 GLU692 GLU693 VAL694 ILE695 HIS696 GLY697 LYS698 VAL699 VAL700 LEU701 LEU702 ASN703 ARG704 ALA705 PRO706 THR707 LEU708 HIS709 ARG710 LEU711 GLY712 ILE713 GLN714 ALA715 PHE716 GLN717 PRO718 VAL719 LEU720 VAL721 GLU722 GLY723 GLN724 SER725 ILE726 GLN727 LEU728 HIS729 PRO730 LEU731 VAL732 CYS733 GLU734 ALA735 PHE736 ASN737 ALA738 ASP739 PHE740 ASP741 GLY742 ASP743 GLN744 MET745 ALA746 VAL747 HIS748 VAL749 PRO750 LEU751 SER752 SER753 PHE754 ALA755 GLN756 ALA757 GLU758 ALA759 ARG760 ILE761 GLN762 MET763 LEU764 SER765 ALA766 HIS767 ASN768 LEU769 LEU770 SER771 PRO772 ALA773 SER774 GLY775 GLU776 PRO777 LEU778 ALA779 LYS780 PRO781 SER782 ARG783 ASP784 ILE785 ILE786 LEU787 GLY788 LEU789 TYR790 TYR791 ILE792 THR793 GLN794 VAL795 ARG796 LYS797 GLU798 LYS799 LYS800 GLY801 ALA802 GLY803 LEU804 GLU805 PHE806 ALA807 THR808 PRO809 GLU810 GLU811 ALA812 LEU813 ALA814 ALA815 HIS816 GLU817 ARG818 GLY819 GLU820 VAL821 ALA822 LEU823 ASN824 ALA825 PRO826 ILE827 LYS828 VAL829 ALA830 GLY831 ARG832 GLU833 THR834 SER835 VAL836 GLY837 ARG838 LEU839 LYS840 TYR841 VAL842 PHE843 ALA844 ASN845 PRO846 ASP847 GLU848 ALA849 LEU850 LEU851 ALA852 VAL853 ALA854 HIS855 GLY856 ILE857 VAL858 ASP859 LEU860 GLN861 ASP862 VAL863 VAL864 THR865 VAL866 ARG867 TYR868 MET869 GLY870 LYS871 ARG872 LEU873 GLU874 THR875 SER876 PRO877 GLY878 ARG879 ILE880 LEU881 PHE882 ALA883 ARG884 ILE885 VAL886 ALA887 GLU888 ALA889 VAL890 GLU891 ASP892 GLU893 LYS894 VAL895 ALA896 TRP897 GLU898 LEU899 ILE900 GLN901 LEU902 ASP903 VAL904 PRO905 GLN906 GLU907 LYS908 ASN909 SER910 LEU911 LYS912 ASP913 LEU914 VAL915 TYR916 GLN917 ALA918 PHE919 LEU920 ARG921 LEU922 GLY923 MET924 GLU925 LYS926 THR927 ALA928 ARG929 LEU930 LEU931 ASP932 ALA933 LEU934 LYS935 TYR936 TYR937 GLY938 PHE939 THR940 PHE941 SER942 THR943 THR944 SER945 GLY946 ILE947 THR948 ILE949 GLY950 ILE951 ASP952 ASP953 ALA954 VAL955 ILE956 PRO957 GLU958 GLU959 LYS960 LYS961 GLN962 TYR963 LEU964 GLU965 GLU966 ALA967 ASP968 ARG969 LYS970 LEU971 LEU972 GLN973 ILE974 GLU975 GLN976 ALA977 TYR978 GLU979 MET980 GLY981 PHE982 LEU983 THR984 ASP985 ARG986 GLU987 ARG988 TYR989 ASP990 GLN991 ILE992 LEU993 GLN994 LEU995 TRP996 THR997 GLU998 THR999 THR1000 GLU1001 LYS1002 VAL1003 THR1004 GLN1005 ALA1006 VAL1007 PHE1008 LYS1009 ASN1010 PHE1011 GLU1012 GLU1013 ASN1014 TYR1015 PRO1016 PHE1017 ASN1018 PRO1019 LEU1020 TYR1021 VAL1022 MET1023 ALA1024 GLN1025 SER1026 GLY1027 ALA1028 ARG1029 GLY1030 ASN1031 PRO1032 GLN1033 GLN1034 ILE1035 ARG1036 GLN1037 LEU1038 CYS1039 GLY1040 LEU1041 ARG1042 GLY1043 LEU1044 MET1045 GLN1046 LYS1047 PRO1048 SER1049 GLY1050 GLU1051 THR1052 PHE1053 GLU1054 VAL1055 PRO1056 VAL1057 ARG1058 SER1059 SER1060 PHE1061 ARG1062 GLU1063 GLY1064 LEU1065 THR1066 VAL1067 LEU1068 GLU1069 TYR1070 PHE1071 ILE1072 SER1073 SER1074 HIS1075 GLY1076 ALA1077 ARG1078 LYS1079 GLY1080 GLY1081 ALA1082 ASP1083 THR1084 ALA1085 LEU1086 ARG1087 THR1088 ALA1089 ASP1090 SER1091 GLY1092 TYR1093 LEU1094 THR1095 ARG1096 LYS1097 LEU1098 VAL1099 ASP1100 VAL1101 THR1102 HIS1103 GLU1104 ILE1105 VAL1106 VAL1107 ARG1108 GLU1109 ALA1110 ASP1111 CYS1112 GLY1113 THR1114 THR1115 ASN1116 TYR1117 ILE1118 SER1119 VAL1120 PRO1121 LEU1122 PHE1123 GLN1124 PRO1125 ASP1126 GLU1127 VAL1128 THR1129 ARG1130 SER1131 LEU1132 ARG1133 LEU1134 ARG1135 LYS1136 ARG1137 ALA1138 ASP1139 ILE1140 GLU1141 ALA1142 GLY1143 LEU1144 TYR1145 GLY1146 ARG1147 VAL1148 LEU1149 ALA1150 ARG1151 GLU1152 VAL1153 GLU1154 VAL1155 LEU1156 GLY1157 VAL1158 ARG1159 LEU1160 GLU1161 GLU1162 GLY1163 ARG1164 TYR1165 LEU1166 SER1167 MET1168 ASP1169 ASP1170 VAL1171 HIS1172 LEU1173 LEU1174 ILE1175 LYS1176 ALA1177 ALA1178 GLU1179 ALA1180 GLY1181 GLU1182 ILE1183 GLN1184 GLU1185 VAL1186 PRO1187 VAL1188 ARG1189 SER1190 PRO1191 LEU1192 THR1193 CYS1194 GLN1195 THR1196 ARG1197 TYR1198 GLY1199 VAL1200 CYS1201 GLN1202 LYS1203 CYS1204 TYR1205 GLY1206 TYR1207 ASP1208 LEU1209 SER1210 MET1211 ALA1212 ARG1213 PRO1214 VAL1215 SER1216 ILE1217 GLY1218 GLU1219 ALA1220 VAL1221 GLY1222 ILE1223 VAL1224 ALA1225 ALA1226 GLN1227 SER1228 ILE1229 GLY1230 GLU1231 PRO1232 GLY1233 THR1234 GLN1235 LEU1236 THR1237 MET1238 ARG1239 THR1240 PHE1241 HIS1242 THR1243 GLY1244 GLY1245 VAL1246 ALA1247 GLY1248 ALA1249 ALA1250 ASP1251 ILE1252 THR1253 GLN1254 GLY1255 LEU1256 PRO1257 ARG1258 VAL1259 ILE1260 GLU1261 LEU1262 PHE1263 GLU1264 ALA1265 ARG1266 ARG1267 PRO1268 LYS1269 ALA1270 LYS1271 ALA1272 VAL1273 ILE1274 SER1275 GLU1276 ILE1277 ASP1278 GLY1279 VAL1280 VAL1281 ARG1282 ILE1283 GLU1284 GLU1285 THR1286 GLU1287 GLU1288 LYS1289 LEU1290 SER1291 VAL1292 PHE1293 VAL1294 GLU1295 SER1296 GLU1297 GLY1298 PHE1299 SER1300 LYS1301 GLU1302 TYR1303 LYS1304 LEU1305 PRO1306 LYS1307 GLU1308 ALA1309 ARG1310 LEU1311 LEU1312 VAL1313 LYS1314 ASP1315 GLY1316 ASP1317 TYR1318 VAL1319 GLU1320 ALA1321 GLY1322 GLN1323 PRO1324 LEU1325 THR1326 ARG1327 GLY1328 ALA1329 ILE1330 ASP1331 PRO1332 HIS1333 GLN1334 LEU1335 LEU1336 GLU1337 ALA1338 LYS1339 GLY1340 PRO1341 GLU1342 ALA1343 VAL1344 GLU1345 ARG1346 TYR1347 LEU1348 VAL1349 GLU1350 GLU1351 ILE1352 GLN1353 LYS1354 VAL1355 TYR1356 ARG1357 ALA1358 GLN1359 GLY1360 VAL1361 LYS1362 LEU1363 HIS1364 ASP1365 LYS1366 HIS1367 ILE1368 GLU1369 ILE1370 VAL1371 VAL1372 ARG1373 GLN1374 MET1375 MET1376 LYS1377 TYR1378 VAL1379 GLU1380 VAL1381 THR1382 ASP1383 PRO1384 GLY1385 ASP1386 SER1387 ARG1388 LEU1389 LEU1390 GLU1391 GLY1392 GLN1393 VAL1394 LEU1395 GLU1396 LYS1397 TRP1398 ASP1399 VAL1400 GLU1401 ALA1402 LEU1403 ASN1404 GLU1405 ARG1406 LEU1407 ILE1408 ALA1409 GLU1410 GLY1411 LYS1412 THR1413 PRO1414 VAL1415 ALA1416 TRP1417 LYS1418 PRO1419 LEU1420 LEU1421 MET1422 GLY1423 VAL1424 THR1425 LYS1426 SER1427 ALA1428 LEU1429 SER1430 THR1431 LYS1432 SER1433 TRP1434 LEU1435 SER1436 ALA1437 ALA1438 SER1439 PHE1440 GLN1441 ASN1442 THR1443 THR1444 HIS1445 VAL1446 LEU1447 THR1448 GLU1449 ALA1450 ALA1451 ILE1452 ALA1453 GLY1454 LYS1455 LYS1456 ASP1457 GLU1458 LEU1459 ILE1460 GLY1461 LEU1462 LYS1463 GLU1464 ASN1465 VAL1466 ILE1467 LEU1468 GLY1469 ARG1470 LEU1471 ILE1472 PRO1473 ALA1474 GLY1475 THR1476 GLY1477 SER1478 ASP1479 PHE1480 VAL1481 ARG1482 PHE1483 THR1484 GLN1485 VAL1486 VAL1487 ASP1488 GLN1489 LYS1490 THR1491 LEU1492 LYS1493 ALA1494 ILE1495 GLU1496 GLU1497 ALA1498 ARG1499 LYS1500 GLU1501 ALA1502 VAL1503 GLU1504 ALA1505
Unit 8 ALA2 GLU3 PRO4 GLY5 ILE6 ASP7 LYS8 LEU9 PHE10 GLY11 MET12 VAL13 ASP14 SER15 LYS16 TYR17 ARG18 LEU19 THR20 VAL21 VAL22 VAL23 ALA24 LYS25 ARG26 ALA27 GLN28 GLN29 LEU30 LEU31 ARG32 HIS33 GLY34 PHE35 LYS36 ASN37 THR38 VAL39 LEU40 GLU41 PRO42 GLU43 GLU44 ARG45 PRO46 LYS47 MET48 GLN49 THR50 LEU51 GLU52 GLY53 LEU54 PHE55 ASP56 ASP57 PRO58 ASN59 ALA60 GLU61 THR62 TRP63 ALA64 MET65 LYS66 GLU67 LEU68 LEU69 THR70 GLY71 ARG72 LEU73 VAL74 PHE75 GLY76 GLU77 ASN78 LEU79 VAL80 PRO81 GLU82 ASP83 ARG84 LEU85 GLN86 LYS87 GLU88 MET89 GLU90 ARG91 ILE92 TYR93 PRO94 GLY95 GLU96
Unit 9 LYS74 ILE75 SER76 THR77 SER78 ASP79 PRO80 VAL81 ARG82 GLN83 TYR84 LEU85 HIS86 GLU87 ILE88 GLY89 GLN90 VAL91 PRO92 LEU93 LEU94 THR95 LEU96 GLU97 GLU98 GLU99 VAL100 GLU101 LEU102 ALA103 ARG104 LYS105 VAL106 GLU107 GLU108 GLY109 MET110 GLU111 ALA112 ILE113 LYS114 LYS115 LEU116 SER117 GLU118 ILE119 THR120 GLY121 LEU122 ASP123 PRO124 ASP125 LEU126 ILE127 ARG128 GLU129 VAL130 VAL131 ARG132 ALA133 LYS134 ILE135 LEU136 GLY137 SER138 ALA139 ARG140 VAL141 ARG142 HIS143 ILE144 PRO145 GLY146 LEU147 LYS148 GLU149 THR150 LEU151 ASP152 PRO153 LYS154 THR155 VAL156 GLU157 GLU158 ILE159 ASP160 GLN161 LYS162 LEU163 LYS164 SER165 LEU166 PRO167 LYS168 GLU169 HIS170 LYS171 ARG172 TYR173 LEU174 HIS175 ILE176 ALA177 ARG178 GLU179 GLY180 GLU181 ALA182 ALA183 ARG184 GLN185 HIS186 LEU187 ILE188 GLU189 ALA190 ASN191 LEU192 ARG193 LEU194 VAL195 VAL196 SER197 ILE198 ALA199 LYS200 LYS201 TYR202 THR203 GLY204 ARG205 GLY206 LEU207 SER208 PHE209 LEU210 ASP211 LEU212 ILE213 GLN214 GLU215 GLY216 ASN217 GLN218 GLY219 LEU220 ILE221 ARG222 ALA223 VAL224 GLU225 LYS226 PHE227 GLU228 TYR229 LYS230 ARG231 ARG232 PHE233 LYS234 PHE235 SER236 THR237 TYR238 ALA239 THR240 TRP241 TRP242 ILE243 ARG244 GLN245 ALA246 ILE247 ASN248 ARG249 ALA250 ILE251 ALA252 ASP253 GLN254 ALA255 ARG256 THR257 ILE258 ARG259 ILE260 PRO261 VAL262 HIS263 MET264 VAL265 GLU266 THR267 ILE268 ASN269 LYS270 LEU271 SER272 ARG273 THR274 ALA275 ARG276 GLN277 LEU278 GLN279 GLN280 GLU281 LEU282 GLY283 ARG284 GLU285 PRO286 THR287 TYR288 GLU289 GLU290 ILE291 ALA292 GLU293 ALA294 MET295 GLY296 PRO297 GLY298 TRP299 ASP300 ALA301 LYS302 ARG303 VAL304 GLU305 GLU306 THR307 LEU308 LYS309 ILE310 ALA311 GLN312 GLU313 PRO314 VAL315 SER316 LEU317 GLU318 THR319 PRO320 ILE321 GLY322 ASP323 GLU324 LYS325 ASP326 SER327 PHE328 TYR329 GLY330 ASP331 PHE332 ILE333 PRO334 ASP335 GLU336 HIS337 LEU338 PRO339 SER340 PRO341 VAL342 ASP343 ALA344 ALA345 THR346 GLN347 SER348 LEU349 LEU350 SER351 GLU352 GLU353 LEU354 GLU355 LYS356 ALA357 LEU358 SER359 LYS360 LEU361 SER362 GLU363 ARG364 GLU365 ALA366 MET367 VAL368 LEU369 LYS370 LEU371 ARG372 LYS373 GLY374 LEU375 ILE376 ASP377 GLY378 ALA384 ALA385 ALA386 ALA387 ALA388 ALA389 ALA390 GLY391 VAL392 THR393 ARG394 GLU395 ARG396 ILE397 ARG398 GLN399 ILE400 GLU401 ASN402 LYS403 ALA404 LEU405 ARG406 LYS407 LEU408 LYS409 TYR410 HIS411 GLU412 SER413 ARG414 THR415 ARG416 LYS417 LEU418 ARG419 ASP420 PHE421 LEU422 ASP423
Nucleic acids
Unit 3 G1 C2 G3 G4 C5 G6 A7 U8
Other macromolecules
Unit 1 DG1 DG2 DA3 DA4 DT5 DC6 DG7 DA8 DT9 DA10 DT11 DC12 DG13 DC14 DC15 DG16 DC17 DA18 DT19 DT20 DA21 DT22 DA23 DG24 DC25 DA26 DC27 DC28 DC29 DC30 DA31 DG32 DG33 DC34 DT35 DT36 DT37 DA38 DC39 DA40 DC41 DT42 DT43 DT44 DA45 DT46 DG47 DC48 DT49
Unit 2 DA1 DG2 DC3 DA4 DT5 DA6 DA7 DA8 DG9 DT10 DG11 DT12 DA13 DA14 DA15 DG16 DC17 DC18 DT19 DG20 DG21 DG22 DG23 DT24 DG25 DC26 DC27 DT28 DA29 DA30 DG31 DT32 DT33 DG34 DG35 DA36 DA37 DT38 DT39 DG40 DC41 DT42 DC43 DG44 DA45 DT46 DT47 DC48 DC49
Ligands
Unit 10 ATP999
Unit 11 G4P1
Unit 12 MG21 MG22 MG23
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany