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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURE OF O-SUCCINYLBENZOATE SYNTHASE COMPLEXED WITH N-SUCCINYL PHENYLGLYCINE
Keywords RACEMASE, LYASE, ISOMERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1SJD     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   N-ACYLAMINO ACID RACEMASE  A 367 2765 0
2  Protein   N-ACYLAMINO ACID RACEMASE  B 368 2772 0
3  Protein   N-ACYLAMINO ACID RACEMASE  C 367 2765 0
4  Protein   N-ACYLAMINO ACID RACEMASE  D 367 2765 0
5  Ligand   N-ACYLAMINO ACID RACEMASE  A 1 0 18
6  Ligand   N-ACYLAMINO ACID RACEMASE  B 2 0 36
7  Ligand   N-ACYLAMINO ACID RACEMASE  C 2 0 36
8  Ligand   N-ACYLAMINO ACID RACEMASE  D 1 0 18
9 Water     1162 0 1162
total       2637 11067 1270

Proteins
Unit 1 MET1 LYS2 LEU3 SER4 GLY5 VAL6 GLU7 LEU8 ARG9 ARG10 VAL11 GLN12 MET13 PRO14 LEU15 VAL16 ALA17 PRO18 PHE19 ARG20 THR21 SER22 PHE23 GLY24 THR25 GLN26 SER27 VAL28 ARG29 GLU30 LEU31 LEU32 LEU33 LEU34 ARG35 ALA36 VAL37 THR38 PRO39 ALA40 GLY41 GLU42 GLY43 TRP44 GLY45 GLU46 CYS47 VAL48 THR49 MET50 ALA51 GLY52 PRO53 LEU54 TYR55 SER56 SER57 GLU58 TYR59 ASN60 ASP61 GLY62 ALA63 GLU64 HIS65 VAL66 LEU67 ARG68 HIS69 TYR70 LEU71 ILE72 PRO73 ALA74 LEU75 LEU76 ALA77 ALA78 GLU79 ASP80 ILE81 THR82 ALA83 ALA84 LYS85 VAL86 THR87 PRO88 LEU89 LEU90 ALA91 LYS92 PHE93 LYS94 GLY95 HIS96 ARG97 MET98 ALA99 LYS100 GLY101 ALA102 LEU103 GLU104 MET105 ALA106 VAL107 LEU108 ASP109 ALA110 GLU111 LEU112 ARG113 ALA114 HIS115 GLU116 ARG117 SER118 PHE119 ALA120 ALA121 GLU122 LEU123 GLY124 SER125 VAL126 ARG127 ASP128 SER129 VAL130 PRO131 CYS132 GLY133 VAL134 SER135 VAL136 GLY137 ILE138 MET139 ASP140 THR141 ILE142 PRO143 GLN144 LEU145 LEU146 ASP147 VAL148 VAL149 GLY150 GLY151 TYR152 LEU153 ASP154 GLU155 GLY156 TYR157 VAL158 ARG159 ILE160 LYS161 LEU162 LYS163 ILE164 GLU165 PRO166 GLY167 TRP168 ASP169 VAL170 GLU171 PRO172 VAL173 ARG174 ALA175 VAL176 ARG177 GLU178 ARG179 PHE180 GLY181 ASP182 ASP183 VAL184 LEU185 LEU186 GLN187 VAL188 ASP189 ALA190 ASN191 THR192 ALA193 TYR194 THR195 LEU196 GLY197 ASP198 ALA199 PRO200 GLN201 LEU202 ALA203 ARG204 LEU205 ASP206 PRO207 PHE208 GLY209 LEU210 LEU211 LEU212 ILE213 GLU214 GLN215 PRO216 LEU217 GLU218 GLU219 GLU220 ASP221 VAL222 LEU223 GLY224 HIS225 ALA226 GLU227 LEU228 ALA229 ARG230 ARG231 ILE232 GLN233 THR234 PRO235 ILE236 CYS237 LEU238 ASP239 GLU240 SER241 ILE242 VAL243 SER244 ALA245 ARG246 ALA247 ALA248 ALA249 ASP250 ALA251 ILE252 LYS253 LEU254 GLY255 ALA256 VAL257 GLN258 ILE259 VAL260 ASN261 ILE262 LYS263 PRO264 GLY265 ARG266 VAL267 GLY268 GLY269 TYR270 LEU271 GLU272 ALA273 ARG274 ARG275 VAL276 HIS277 ASP278 VAL279 CYS280 ALA281 ALA282 HIS283 GLY284 ILE285 PRO286 VAL287 TRP288 CYS289 GLY290 GLY291 MET292 ILE293 GLU294 THR295 GLY296 LEU297 GLY298 ARG299 ALA300 ALA301 ASN302 VAL303 ALA304 LEU305 ALA306 SER307 LEU308 PRO309 ASN310 PHE311 THR312 LEU313 PRO314 GLY315 ASP316 THR317 SER318 ALA319 SER320 ASP321 ARG322 PHE323 TYR324 LYS325 THR326 ASP327 ILE328 THR329 GLU330 PRO331 PHE332 VAL333 LEU334 SER335 GLY336 GLY337 HIS338 LEU339 PRO340 VAL341 PRO342 THR343 GLY344 PRO345 GLY346 LEU347 GLY348 VAL349 ALA350 PRO351 ILE352 PRO353 GLU354 LEU355 LEU356 ASP357 GLU358 VAL359 THR360 THR361 ALA362 LYS363 VAL364 TRP365 ILE366 GLY367
Unit 2 MET1 LYS2 LEU3 SER4 GLY5 VAL6 GLU7 LEU8 ARG9 ARG10 VAL11 GLN12 MET13 PRO14 LEU15 VAL16 ALA17 PRO18 PHE19 ARG20 THR21 SER22 PHE23 GLY24 THR25 GLN26 SER27 VAL28 ARG29 GLU30 LEU31 LEU32 LEU33 LEU34 ARG35 ALA36 VAL37 THR38 PRO39 ALA40 GLY41 GLU42 GLY43 TRP44 GLY45 GLU46 CYS47 VAL48 THR49 MET50 ALA51 GLY52 PRO53 LEU54 TYR55 SER56 SER57 GLU58 TYR59 ASN60 ASP61 GLY62 ALA63 GLU64 HIS65 VAL66 LEU67 ARG68 HIS69 TYR70 LEU71 ILE72 PRO73 ALA74 LEU75 LEU76 ALA77 ALA78 GLU79 ASP80 ILE81 THR82 ALA83 ALA84 LYS85 VAL86 THR87 PRO88 LEU89 LEU90 ALA91 LYS92 PHE93 LYS94 GLY95 HIS96 ARG97 MET98 ALA99 LYS100 GLY101 ALA102 LEU103 GLU104 MET105 ALA106 VAL107 LEU108 ASP109 ALA110 GLU111 LEU112 ARG113 ALA114 HIS115 GLU116 ARG117 SER118 PHE119 ALA120 ALA121 GLU122 LEU123 GLY124 SER125 VAL126 ARG127 ASP128 SER129 VAL130 PRO131 CYS132 GLY133 VAL134 SER135 VAL136 GLY137 ILE138 MET139 ASP140 THR141 ILE142 PRO143 GLN144 LEU145 LEU146 ASP147 VAL148 VAL149 GLY150 GLY151 TYR152 LEU153 ASP154 GLU155 GLY156 TYR157 VAL158 ARG159 ILE160 LYS161 LEU162 LYS163 ILE164 GLU165 PRO166 GLY167 TRP168 ASP169 VAL170 GLU171 PRO172 VAL173 ARG174 ALA175 VAL176 ARG177 GLU178 ARG179 PHE180 GLY181 ASP182 ASP183 VAL184 LEU185 LEU186 GLN187 VAL188 ASP189 ALA190 ASN191 THR192 ALA193 TYR194 THR195 LEU196 GLY197 ASP198 ALA199 PRO200 GLN201 LEU202 ALA203 ARG204 LEU205 ASP206 PRO207 PHE208 GLY209 LEU210 LEU211 LEU212 ILE213 GLU214 GLN215 PRO216 LEU217 GLU218 GLU219 GLU220 ASP221 VAL222 LEU223 GLY224 HIS225 ALA226 GLU227 LEU228 ALA229 ARG230 ARG231 ILE232 GLN233 THR234 PRO235 ILE236 CYS237 LEU238 ASP239 GLU240 SER241 ILE242 VAL243 SER244 ALA245 ARG246 ALA247 ALA248 ALA249 ASP250 ALA251 ILE252 LYS253 LEU254 GLY255 ALA256 VAL257 GLN258 ILE259 VAL260 ASN261 ILE262 LYS263 PRO264 GLY265 ARG266 VAL267 GLY268 GLY269 TYR270 LEU271 GLU272 ALA273 ARG274 ARG275 VAL276 HIS277 ASP278 VAL279 CYS280 ALA281 ALA282 HIS283 GLY284 ILE285 PRO286 VAL287 TRP288 CYS289 GLY290 GLY291 MET292 ILE293 GLU294 THR295 GLY296 LEU297 GLY298 ARG299 ALA300 ALA301 ASN302 VAL303 ALA304 LEU305 ALA306 SER307 LEU308 PRO309 ASN310 PHE311 THR312 LEU313 PRO314 GLY315 ASP316 THR317 SER318 ALA319 SER320 ASP321 ARG322 PHE323 TYR324 LYS325 THR326 ASP327 ILE328 THR329 GLU330 PRO331 PHE332 VAL333 LEU334 SER335 GLY336 GLY337 HIS338 LEU339 PRO340 VAL341 PRO342 THR343 GLY344 PRO345 GLY346 LEU347 GLY348 VAL349 ALA350 PRO351 ILE352 PRO353 GLU354 LEU355 LEU356 ASP357 GLU358 VAL359 THR360 THR361 ALA362 LYS363 VAL364 TRP365 ILE366 GLY367 SER368
Unit 3 MET1 LYS2 LEU3 SER4 GLY5 VAL6 GLU7 LEU8 ARG9 ARG10 VAL11 GLN12 MET13 PRO14 LEU15 VAL16 ALA17 PRO18 PHE19 ARG20 THR21 SER22 PHE23 GLY24 THR25 GLN26 SER27 VAL28 ARG29 GLU30 LEU31 LEU32 LEU33 LEU34 ARG35 ALA36 VAL37 THR38 PRO39 ALA40 GLY41 GLU42 GLY43 TRP44 GLY45 GLU46 CYS47 VAL48 THR49 MET50 ALA51 GLY52 PRO53 LEU54 TYR55 SER56 SER57 GLU58 TYR59 ASN60 ASP61 GLY62 ALA63 GLU64 HIS65 VAL66 LEU67 ARG68 HIS69 TYR70 LEU71 ILE72 PRO73 ALA74 LEU75 LEU76 ALA77 ALA78 GLU79 ASP80 ILE81 THR82 ALA83 ALA84 LYS85 VAL86 THR87 PRO88 LEU89 LEU90 ALA91 LYS92 PHE93 LYS94 GLY95 HIS96 ARG97 MET98 ALA99 LYS100 GLY101 ALA102 LEU103 GLU104 MET105 ALA106 VAL107 LEU108 ASP109 ALA110 GLU111 LEU112 ARG113 ALA114 HIS115 GLU116 ARG117 SER118 PHE119 ALA120 ALA121 GLU122 LEU123 GLY124 SER125 VAL126 ARG127 ASP128 SER129 VAL130 PRO131 CYS132 GLY133 VAL134 SER135 VAL136 GLY137 ILE138 MET139 ASP140 THR141 ILE142 PRO143 GLN144 LEU145 LEU146 ASP147 VAL148 VAL149 GLY150 GLY151 TYR152 LEU153 ASP154 GLU155 GLY156 TYR157 VAL158 ARG159 ILE160 LYS161 LEU162 LYS163 ILE164 GLU165 PRO166 GLY167 TRP168 ASP169 VAL170 GLU171 PRO172 VAL173 ARG174 ALA175 VAL176 ARG177 GLU178 ARG179 PHE180 GLY181 ASP182 ASP183 VAL184 LEU185 LEU186 GLN187 VAL188 ASP189 ALA190 ASN191 THR192 ALA193 TYR194 THR195 LEU196 GLY197 ASP198 ALA199 PRO200 GLN201 LEU202 ALA203 ARG204 LEU205 ASP206 PRO207 PHE208 GLY209 LEU210 LEU211 LEU212 ILE213 GLU214 GLN215 PRO216 LEU217 GLU218 GLU219 GLU220 ASP221 VAL222 LEU223 GLY224 HIS225 ALA226 GLU227 LEU228 ALA229 ARG230 ARG231 ILE232 GLN233 THR234 PRO235 ILE236 CYS237 LEU238 ASP239 GLU240 SER241 ILE242 VAL243 SER244 ALA245 ARG246 ALA247 ALA248 ALA249 ASP250 ALA251 ILE252 LYS253 LEU254 GLY255 ALA256 VAL257 GLN258 ILE259 VAL260 ASN261 ILE262 LYS263 PRO264 GLY265 ARG266 VAL267 GLY268 GLY269 TYR270 LEU271 GLU272 ALA273 ARG274 ARG275 VAL276 HIS277 ASP278 VAL279 CYS280 ALA281 ALA282 HIS283 GLY284 ILE285 PRO286 VAL287 TRP288 CYS289 GLY290 GLY291 MET292 ILE293 GLU294 THR295 GLY296 LEU297 GLY298 ARG299 ALA300 ALA301 ASN302 VAL303 ALA304 LEU305 ALA306 SER307 LEU308 PRO309 ASN310 PHE311 THR312 LEU313 PRO314 GLY315 ASP316 THR317 SER318 ALA319 SER320 ASP321 ARG322 PHE323 TYR324 LYS325 THR326 ASP327 ILE328 THR329 GLU330 PRO331 PHE332 VAL333 LEU334 SER335 GLY336 GLY337 HIS338 LEU339 PRO340 VAL341 PRO342 THR343 GLY344 PRO345 GLY346 LEU347 GLY348 VAL349 ALA350 PRO351 ILE352 PRO353 GLU354 LEU355 LEU356 ASP357 GLU358 VAL359 THR360 THR361 ALA362 LYS363 VAL364 TRP365 ILE366 GLY367
Unit 4 MET1 LYS2 LEU3 SER4 GLY5 VAL6 GLU7 LEU8 ARG9 ARG10 VAL11 GLN12 MET13 PRO14 LEU15 VAL16 ALA17 PRO18 PHE19 ARG20 THR21 SER22 PHE23 GLY24 THR25 GLN26 SER27 VAL28 ARG29 GLU30 LEU31 LEU32 LEU33 LEU34 ARG35 ALA36 VAL37 THR38 PRO39 ALA40 GLY41 GLU42 GLY43 TRP44 GLY45 GLU46 CYS47 VAL48 THR49 MET50 ALA51 GLY52 PRO53 LEU54 TYR55 SER56 SER57 GLU58 TYR59 ASN60 ASP61 GLY62 ALA63 GLU64 HIS65 VAL66 LEU67 ARG68 HIS69 TYR70 LEU71 ILE72 PRO73 ALA74 LEU75 LEU76 ALA77 ALA78 GLU79 ASP80 ILE81 THR82 ALA83 ALA84 LYS85 VAL86 THR87 PRO88 LEU89 LEU90 ALA91 LYS92 PHE93 LYS94 GLY95 HIS96 ARG97 MET98 ALA99 LYS100 GLY101 ALA102 LEU103 GLU104 MET105 ALA106 VAL107 LEU108 ASP109 ALA110 GLU111 LEU112 ARG113 ALA114 HIS115 GLU116 ARG117 SER118 PHE119 ALA120 ALA121 GLU122 LEU123 GLY124 SER125 VAL126 ARG127 ASP128 SER129 VAL130 PRO131 CYS132 GLY133 VAL134 SER135 VAL136 GLY137 ILE138 MET139 ASP140 THR141 ILE142 PRO143 GLN144 LEU145 LEU146 ASP147 VAL148 VAL149 GLY150 GLY151 TYR152 LEU153 ASP154 GLU155 GLY156 TYR157 VAL158 ARG159 ILE160 LYS161 LEU162 LYS163 ILE164 GLU165 PRO166 GLY167 TRP168 ASP169 VAL170 GLU171 PRO172 VAL173 ARG174 ALA175 VAL176 ARG177 GLU178 ARG179 PHE180 GLY181 ASP182 ASP183 VAL184 LEU185 LEU186 GLN187 VAL188 ASP189 ALA190 ASN191 THR192 ALA193 TYR194 THR195 LEU196 GLY197 ASP198 ALA199 PRO200 GLN201 LEU202 ALA203 ARG204 LEU205 ASP206 PRO207 PHE208 GLY209 LEU210 LEU211 LEU212 ILE213 GLU214 GLN215 PRO216 LEU217 GLU218 GLU219 GLU220 ASP221 VAL222 LEU223 GLY224 HIS225 ALA226 GLU227 LEU228 ALA229 ARG230 ARG231 ILE232 GLN233 THR234 PRO235 ILE236 CYS237 LEU238 ASP239 GLU240 SER241 ILE242 VAL243 SER244 ALA245 ARG246 ALA247 ALA248 ALA249 ASP250 ALA251 ILE252 LYS253 LEU254 GLY255 ALA256 VAL257 GLN258 ILE259 VAL260 ASN261 ILE262 LYS263 PRO264 GLY265 ARG266 VAL267 GLY268 GLY269 TYR270 LEU271 GLU272 ALA273 ARG274 ARG275 VAL276 HIS277 ASP278 VAL279 CYS280 ALA281 ALA282 HIS283 GLY284 ILE285 PRO286 VAL287 TRP288 CYS289 GLY290 GLY291 MET292 ILE293 GLU294 THR295 GLY296 LEU297 GLY298 ARG299 ALA300 ALA301 ASN302 VAL303 ALA304 LEU305 ALA306 SER307 LEU308 PRO309 ASN310 PHE311 THR312 LEU313 PRO314 GLY315 ASP316 THR317 SER318 ALA319 SER320 ASP321 ARG322 PHE323 TYR324 LYS325 THR326 ASP327 ILE328 THR329 GLU330 PRO331 PHE332 VAL333 LEU334 SER335 GLY336 GLY337 HIS338 LEU339 PRO340 VAL341 PRO342 THR343 GLY344 PRO345 GLY346 LEU347 GLY348 VAL349 ALA350 PRO351 ILE352 PRO353 GLU354 LEU355 LEU356 ASP357 GLU358 VAL359 THR360 THR361 ALA362 LYS363 VAL364 TRP365 ILE366 GLY367

Ligands
Unit 5 NPG1200
Unit 6 NPG1163 NPG1300
Unit 7 NPG1164 NPG1400
Unit 8 NPG1500

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany