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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE 2 FROM ARABIDOPSIS
Keywords TRANSFERASE, KINASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1S57     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NUCLEOSIDE DIPHOSPHATE KINASE II  A 153 1198 0
2  Protein   NUCLEOSIDE DIPHOSPHATE KINASE II  B 149 1167 0
3  Protein   NUCLEOSIDE DIPHOSPHATE KINASE II  C 149 1167 0
4  Protein   NUCLEOSIDE DIPHOSPHATE KINASE II  D 153 1198 0
5  Protein   NUCLEOSIDE DIPHOSPHATE KINASE II  E 149 1167 0
6  Protein   NUCLEOSIDE DIPHOSPHATE KINASE II  F 153 1198 0
7  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE II  A 4 0 30
8  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE II  B 4 0 30
9  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE II  C 5 0 45
10  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE II  D 4 0 30
11  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE II  E 3 0 15
12  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE II  F 4 0 30
13 Water     545 0 545
total       1475 7095 725
Proteins
Unit 1 SER79 MET80 GLU81 ASP82 VAL83 GLU84 GLU85 THR86 TYR87 ILE88 MET89 VAL90 LYS91 PRO92 ASP93 GLY94 ILE95 GLN96 ARG97 GLY98 LEU99 VAL100 GLY101 GLU102 ILE103 ILE104 SER105 ARG106 PHE107 GLU108 LYS109 LYS110 GLY111 PHE112 LYS113 LEU114 ILE115 GLY116 LEU117 LYS118 MET119 PHE120 GLN121 CYS122 PRO123 LYS124 GLU125 LEU126 ALA127 GLU128 GLU129 HIS130 TYR131 LYS132 ASP133 LEU134 SER135 ALA136 LYS137 SER138 PHE139 PHE140 PRO141 ASN142 LEU143 ILE144 GLU145 TYR146 ILE147 THR148 SER149 GLY150 PRO151 VAL152 VAL153 CYS154 MET155 ALA156 TRP157 GLU158 GLY159 VAL160 GLY161 VAL162 VAL163 ALA164 SER165 ALA166 ARG167 LYS168 LEU169 ILE170 GLY171 LYS172 THR173 ASP174 PRO175 LEU176 GLN177 ALA178 GLU179 PRO180 GLY181 THR182 ILE183 ARG184 GLY185 ASP186 LEU187 ALA188 VAL189 GLN190 THR191 GLY192 ARG193 ASN194 ILE195 VAL196 HIS197 GLY198 SER199 ASP200 SER201 PRO202 GLU203 ASN204 GLY205 LYS206 ARG207 GLU208 ILE209 GLY210 LEU211 TRP212 PHE213 LYS214 GLU215 GLY216 GLU217 LEU218 CYS219 LYS220 TRP221 ASP222 SER223 ALA224 LEU225 ALA226 THR227 TRP228 LEU229 ARG230 GLU231
Unit 2 VAL83 GLU84 GLU85 THR86 TYR87 ILE88 MET89 VAL90 LYS91 PRO92 ASP93 GLY94 ILE95 GLN96 ARG97 GLY98 LEU99 VAL100 GLY101 GLU102 ILE103 ILE104 SER105 ARG106 PHE107 GLU108 LYS109 LYS110 GLY111 PHE112 LYS113 LEU114 ILE115 GLY116 LEU117 LYS118 MET119 PHE120 GLN121 CYS122 PRO123 LYS124 GLU125 LEU126 ALA127 GLU128 GLU129 HIS130 TYR131 LYS132 ASP133 LEU134 SER135 ALA136 LYS137 SER138 PHE139 PHE140 PRO141 ASN142 LEU143 ILE144 GLU145 TYR146 ILE147 THR148 SER149 GLY150 PRO151 VAL152 VAL153 CYS154 MET155 ALA156 TRP157 GLU158 GLY159 VAL160 GLY161 VAL162 VAL163 ALA164 SER165 ALA166 ARG167 LYS168 LEU169 ILE170 GLY171 LYS172 THR173 ASP174 PRO175 LEU176 GLN177 ALA178 GLU179 PRO180 GLY181 THR182 ILE183 ARG184 GLY185 ASP186 LEU187 ALA188 VAL189 GLN190 THR191 GLY192 ARG193 ASN194 ILE195 VAL196 HIS197 GLY198 SER199 ASP200 SER201 PRO202 GLU203 ASN204 GLY205 LYS206 ARG207 GLU208 ILE209 GLY210 LEU211 TRP212 PHE213 LYS214 GLU215 GLY216 GLU217 LEU218 CYS219 LYS220 TRP221 ASP222 SER223 ALA224 LEU225 ALA226 THR227 TRP228 LEU229 ARG230 GLU231
Unit 3 VAL83 GLU84 GLU85 THR86 TYR87 ILE88 MET89 VAL90 LYS91 PRO92 ASP93 GLY94 ILE95 GLN96 ARG97 GLY98 LEU99 VAL100 GLY101 GLU102 ILE103 ILE104 SER105 ARG106 PHE107 GLU108 LYS109 LYS110 GLY111 PHE112 LYS113 LEU114 ILE115 GLY116 LEU117 LYS118 MET119 PHE120 GLN121 CYS122 PRO123 LYS124 GLU125 LEU126 ALA127 GLU128 GLU129 HIS130 TYR131 LYS132 ASP133 LEU134 SER135 ALA136 LYS137 SER138 PHE139 PHE140 PRO141 ASN142 LEU143 ILE144 GLU145 TYR146 ILE147 THR148 SER149 GLY150 PRO151 VAL152 VAL153 CYS154 MET155 ALA156 TRP157 GLU158 GLY159 VAL160 GLY161 VAL162 VAL163 ALA164 SER165 ALA166 ARG167 LYS168 LEU169 ILE170 GLY171 LYS172 THR173 ASP174 PRO175 LEU176 GLN177 ALA178 GLU179 PRO180 GLY181 THR182 ILE183 ARG184 GLY185 ASP186 LEU187 ALA188 VAL189 GLN190 THR191 GLY192 ARG193 ASN194 ILE195 VAL196 HIS197 GLY198 SER199 ASP200 SER201 PRO202 GLU203 ASN204 GLY205 LYS206 ARG207 GLU208 ILE209 GLY210 LEU211 TRP212 PHE213 LYS214 GLU215 GLY216 GLU217 LEU218 CYS219 LYS220 TRP221 ASP222 SER223 ALA224 LEU225 ALA226 THR227 TRP228 LEU229 ARG230 GLU231
Unit 4 SER79 MET80 GLU81 ASP82 VAL83 GLU84 GLU85 THR86 TYR87 ILE88 MET89 VAL90 LYS91 PRO92 ASP93 GLY94 ILE95 GLN96 ARG97 GLY98 LEU99 VAL100 GLY101 GLU102 ILE103 ILE104 SER105 ARG106 PHE107 GLU108 LYS109 LYS110 GLY111 PHE112 LYS113 LEU114 ILE115 GLY116 LEU117 LYS118 MET119 PHE120 GLN121 CYS122 PRO123 LYS124 GLU125 LEU126 ALA127 GLU128 GLU129 HIS130 TYR131 LYS132 ASP133 LEU134 SER135 ALA136 LYS137 SER138 PHE139 PHE140 PRO141 ASN142 LEU143 ILE144 GLU145 TYR146 ILE147 THR148 SER149 GLY150 PRO151 VAL152 VAL153 CYS154 MET155 ALA156 TRP157 GLU158 GLY159 VAL160 GLY161 VAL162 VAL163 ALA164 SER165 ALA166 ARG167 LYS168 LEU169 ILE170 GLY171 LYS172 THR173 ASP174 PRO175 LEU176 GLN177 ALA178 GLU179 PRO180 GLY181 THR182 ILE183 ARG184 GLY185 ASP186 LEU187 ALA188 VAL189 GLN190 THR191 GLY192 ARG193 ASN194 ILE195 VAL196 HIS197 GLY198 SER199 ASP200 SER201 PRO202 GLU203 ASN204 GLY205 LYS206 ARG207 GLU208 ILE209 GLY210 LEU211 TRP212 PHE213 LYS214 GLU215 GLY216 GLU217 LEU218 CYS219 LYS220 TRP221 ASP222 SER223 ALA224 LEU225 ALA226 THR227 TRP228 LEU229 ARG230 GLU231
Unit 5 VAL83 GLU84 GLU85 THR86 TYR87 ILE88 MET89 VAL90 LYS91 PRO92 ASP93 GLY94 ILE95 GLN96 ARG97 GLY98 LEU99 VAL100 GLY101 GLU102 ILE103 ILE104 SER105 ARG106 PHE107 GLU108 LYS109 LYS110 GLY111 PHE112 LYS113 LEU114 ILE115 GLY116 LEU117 LYS118 MET119 PHE120 GLN121 CYS122 PRO123 LYS124 GLU125 LEU126 ALA127 GLU128 GLU129 HIS130 TYR131 LYS132 ASP133 LEU134 SER135 ALA136 LYS137 SER138 PHE139 PHE140 PRO141 ASN142 LEU143 ILE144 GLU145 TYR146 ILE147 THR148 SER149 GLY150 PRO151 VAL152 VAL153 CYS154 MET155 ALA156 TRP157 GLU158 GLY159 VAL160 GLY161 VAL162 VAL163 ALA164 SER165 ALA166 ARG167 LYS168 LEU169 ILE170 GLY171 LYS172 THR173 ASP174 PRO175 LEU176 GLN177 ALA178 GLU179 PRO180 GLY181 THR182 ILE183 ARG184 GLY185 ASP186 LEU187 ALA188 VAL189 GLN190 THR191 GLY192 ARG193 ASN194 ILE195 VAL196 HIS197 GLY198 SER199 ASP200 SER201 PRO202 GLU203 ASN204 GLY205 LYS206 ARG207 GLU208 ILE209 GLY210 LEU211 TRP212 PHE213 LYS214 GLU215 GLY216 GLU217 LEU218 CYS219 LYS220 TRP221 ASP222 SER223 ALA224 LEU225 ALA226 THR227 TRP228 LEU229 ARG230 GLU231
Unit 6 SER79 MET80 GLU81 ASP82 VAL83 GLU84 GLU85 THR86 TYR87 ILE88 MET89 VAL90 LYS91 PRO92 ASP93 GLY94 ILE95 GLN96 ARG97 GLY98 LEU99 VAL100 GLY101 GLU102 ILE103 ILE104 SER105 ARG106 PHE107 GLU108 LYS109 LYS110 GLY111 PHE112 LYS113 LEU114 ILE115 GLY116 LEU117 LYS118 MET119 PHE120 GLN121 CYS122 PRO123 LYS124 GLU125 LEU126 ALA127 GLU128 GLU129 HIS130 TYR131 LYS132 ASP133 LEU134 SER135 ALA136 LYS137 SER138 PHE139 PHE140 PRO141 ASN142 LEU143 ILE144 GLU145 TYR146 ILE147 THR148 SER149 GLY150 PRO151 VAL152 VAL153 CYS154 MET155 ALA156 TRP157 GLU158 GLY159 VAL160 GLY161 VAL162 VAL163 ALA164 SER165 ALA166 ARG167 LYS168 LEU169 ILE170 GLY171 LYS172 THR173 ASP174 PRO175 LEU176 GLN177 ALA178 GLU179 PRO180 GLY181 THR182 ILE183 ARG184 GLY185 ASP186 LEU187 ALA188 VAL189 GLN190 THR191 GLY192 ARG193 ASN194 ILE195 VAL196 HIS197 GLY198 SER199 ASP200 SER201 PRO202 GLU203 ASN204 GLY205 LYS206 ARG207 GLU208 ILE209 GLY210 LEU211 TRP212 PHE213 LYS214 GLU215 GLY216 GLU217 LEU218 CYS219 LYS220 TRP221 ASP222 SER223 ALA224 LEU225 ALA226 THR227 TRP228 LEU229 ARG230 GLU231
Ligands
Unit 7 SO41001 SO41002 SO41003 EPE1101
Unit 8 SO41004 SO41005 SO41006 EPE1102
Unit 9 SO41007 SO41008 SO41009 EPE1103 EPE1105
Unit 10 SO41010 SO41011 SO41012 EPE1104
Unit 11 SO41013 SO41014 SO41015
Unit 12 SO41016 SO41017 SO41018 EPE1106
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany