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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WIT ELONGATION-ARRESTED RIBOSOME
Keywords SIGNAL RECOGNITION PARTICLE, RNA BINDING, TRANSLATION
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1RY1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    E 49 1051 0
2  RNA    A 128 2728 23
3  RNA    M 27 585 0
4  RNA    N 31 649 0
5  RNA    O 24 511 0
6  RNA    P 19 401 0
7  RNA    Q 12 257 0
8  RNA    R 12 254 0
9  Protein   SRP9  C 71 580 0
10  Protein   SRP14  D 76 604 0
11  Protein   SRP19  B 107 870 0
12  Protein   SRP54NG  U 294 2266 0
13  Protein   SRP54M  W 109 865 0
14  Protein   SIGNAL SEQUENCE PEPTIDE  S 18 150 0
total       977 11771 23

Proteins
Unit 9 GLN5 THR6 TRP7 GLU8 GLU9 PHE10 SER11 ARG12 ALA13 ALA14 GLU15 LYS16 LEU17 TYR18 LEU19 ALA20 ASP21 PRO22 MET23 LYS24 ALA25 ARG26 VAL27 VAL28 LEU29 LYS30 TYR31 ARG32 HIS33 SER34 ASP35 GLY36 ASN37 LEU38 CYS39 VAL40 LYS41 VAL42 THR43 ASP44 ASP45 LEU46 VAL47 CYS48 LEU49 VAL50 TYR51 LYS52 THR53 ASP54 GLN55 ALA56 GLN57 ASP58 VAL59 LYS60 LYS61 ILE62 GLU63 LYS64 PHE65 HIS66 SER67 GLN68 LEU69 MET70 ARG71 LEU72 MET73 VAL74 ALA75
Unit 10 VAL2 LEU3 LEU4 GLU5 SER6 GLU7 GLN8 PHE9 LEU10 THR11 GLU12 LEU13 THR14 ARG15 LEU16 PHE17 GLN18 LYS19 CYS20 ARG21 THR22 SER23 GLY24 SER25 VAL26 TYR27 ILE28 THR29 LEU30 LYS31 LYS32 TYR33 ASP34 GLY35 ASN54 LYS55 CYS56 LEU57 LEU58 ARG59 ALA60 THR61 ASP62 GLY63 LYS64 LYS65 LYS66 ILE67 SER68 THR69 VAL70 VAL71 SER72 SER73 LYS74 GLU75 VAL76 ASN77 LYS78 PHE79 GLN80 MET81 ALA82 TYR83 SER84 ASN85 LEU86 LEU87 ARG88 ALA89 ASN90 MET91 ASP92 GLY93 LEU94 LYS95
Unit 11 ARG14 PHE15 ILE16 CYS17 ILE18 TYR19 PRO20 ALA21 TYR22 LEU23 ASN24 ASN25 LYS26 LYS27 THR28 ILE29 ALA30 GLU31 GLY32 ARG33 ARG34 ILE35 PRO36 ILE37 SER38 LYS39 ALA40 VAL41 GLU42 ASN43 PRO44 THR45 ALA46 THR47 GLU48 ILE49 GLN50 ASP51 VAL52 CYS53 SER54 ALA55 VAL56 GLY57 LEU58 ASN59 VAL60 PHE61 LEU62 GLU63 LYS64 ASN65 LYS66 MET67 TYR68 SER69 ARG70 GLU71 TRP72 ASN73 ARG74 ASP75 VAL76 GLN77 TYR78 ARG79 GLY80 ARG81 VAL82 ARG83 VAL84 GLN85 LEU86 LYS87 GLN88 GLU89 ASP90 GLY91 SER92 LEU93 CYS94 LEU95 VAL96 GLN97 PHE98 PRO99 SER100 ARG101 LYS102 SER103 VAL104 MET105 LEU106 TYR107 ALA108 ALA109 GLU110 MET111 ILE112 PRO113 LYS114 LEU115 LYS116 THR117 ARG118 THR119 GLN120
Unit 12 MET1 PHE2 GLN3 GLN4 LEU5 SER6 ALA7 ARG8 LEU9 GLN10 GLU11 ALA12 ILE13 GLY14 ARG15 LEU16 ARG17 GLY18 ARG19 GLY20 ARG21 ILE22 THR23 GLU24 GLU25 ASP26 LEU27 LYS28 ALA29 THR30 LEU31 ARG32 GLU33 ILE34 ARG35 ARG36 ALA37 LEU38 MET39 ASP40 ALA41 ASP42 VAL43 ASN44 LEU45 GLU46 VAL47 ALA48 ARG49 ASP50 PHE51 VAL52 GLU53 ARG54 VAL55 ARG56 GLU57 GLU58 ALA59 LEU60 GLY61 LYS62 GLN63 VAL64 LEU65 GLU66 SER67 LEU68 THR69 PRO70 ALA71 GLU72 VAL73 ILE74 LEU75 ALA76 THR77 VAL78 TYR79 GLU80 ALA81 LEU82 LYS83 GLU84 ALA85 LEU86 GLY87 GLY88 GLU89 ALA90 ARG91 LEU92 PRO93 VAL94 LEU95 LYS96 ASP97 ARG98 ASN99 LEU100 TRP101 PHE102 LEU103 VAL104 GLY105 LEU106 GLN107 GLY108 SER109 GLY110 LYS111 THR112 THR113 THR114 ALA115 ALA116 LYS117 LEU118 ALA119 LEU120 TYR121 TYR122 LYS123 GLY124 LYS125 GLY126 ARG127 ARG128 PRO129 LEU130 LEU131 VAL132 ALA133 ALA134 ASP135 THR136 GLN137 ARG138 PRO139 ALA140 ALA141 ARG142 GLU143 GLN144 LEU145 ARG146 LEU147 LEU148 GLY149 GLU150 LYS151 VAL152 GLY153 VAL154 PRO155 VAL156 LEU157 GLU158 VAL159 MET160 ASP161 GLY162 GLU163 SER164 PRO165 GLU166 SER167 ILE168 ARG169 ARG170 ARG171 VAL172 GLU173 GLU174 LYS175 ALA176 ARG177 LEU178 GLU179 ALA180 ARG181 ASP182 LEU183 ILE184 LEU185 VAL186 ASP187 THR188 ALA189 GLY190 ARG191 LEU192 GLN193 ILE194 ASP195 GLU196 PRO197 LEU198 MET199 GLY200 GLU201 LEU202 ALA203 ARG204 LEU205 LYS206 GLU207 VAL208 LEU209 GLY210 PRO211 ASP212 GLU213 VAL214 LEU215 LEU216 VAL217 LEU218 ASP219 ALA220 MET221 THR222 GLY223 GLN224 GLU225 ALA226 LEU227 SER228 VAL229 ALA230 ARG231 ALA232 PHE233 ASP234 GLU235 LYS236 VAL237 GLY238 VAL239 THR240 GLY241 LEU242 VAL243 LEU244 THR245 LYS246 LEU247 ASP248 GLY249 ASP250 ALA251 ARG252 GLY253 GLY254 ALA255 ALA256 LEU257 SER258 ALA259 ARG260 HIS261 VAL262 THR263 GLY264 LYS265 PRO266 ILE267 TYR268 PHE269 ALA270 GLY271 VAL272 SER273 GLU274 LYS275 PRO276 GLU277 GLY278 LEU279 GLU280 PRO281 PHE282 TYR283 PRO284 GLU285 ARG286 LEU287 ALA288 GLY289 ARG290 ILE291 LEU292 GLY293 MET294
Unit 13 GLN326 PHE327 THR328 LEU329 ARG330 ASP331 MET332 TYR333 GLU334 GLN335 PHE336 GLN337 ASN338 ILE339 MET340 LYS341 MET342 GLY343 PRO344 PHE345 SER346 GLN347 ILE348 LEU349 GLY350 MET351 ILE352 PRO353 GLY354 PHE355 GLY356 THR357 ASP358 PHE359 MET360 SER361 LYS362 GLY363 ASN364 GLU365 GLN366 GLU367 SER368 MET369 ALA370 ARG371 LEU372 LYS373 LYS374 LEU375 MET376 THR377 ILE378 MET379 ASP380 SER381 MET382 ASN383 ASP384 GLN385 GLU386 LEU387 ASP388 SER389 THR390 ASP391 GLY392 ALA393 LYS394 VAL395 PHE396 SER397 LYS398 GLN399 PRO400 GLY401 ARG402 ILE403 GLN404 ARG405 VAL406 ALA407 ARG408 GLY409 SER410 GLY411 VAL412 SER413 THR414 ARG415 ASP416 VAL417 GLN418 GLU419 LEU420 LEU421 THR422 GLN423 TYR424 THR425 LYS426 PHE427 ALA428 GLN429 MET430 VAL431 LYS432 LYS433 MET434
Unit 14 LEU50 GLY51 PHE52 PRO53 ILE54 ASN55 PHE56 LEU57 THR58 LEU59 TYR60 VAL61 THR62 VAL63 GLN64 HIS65 LYS66 LYS67

Nucleic acids
Unit 1 G100 G101 C102 C103 G104 G105 G106 C107 G108 C109 G110 G111 U112 G113 G114 C115 G116 C117 G118 C119 G120 C121 C122 U123 G124 U125 A126 G127 U128 C129 C130 C131 A132 G133 C134 U135 A136 C137 U138 C139 G140 G141 G142 A143 G144 G145 C146 U147 C148
Unit 2 G112 A113 C114 A115 C116 U117 A118 A119 G120 U121 U122 C123 G124 G125 C126 A127 U128 C129 A130 A131 U132 A133 U134 G135 G136 U137 G138 A139 C140 C141 U142 C143 C144 C145 G146 G147 G148 A149 G150 C151 G152 G153 G154 G155 G156 A157 C158 C159 A160 C161 C162 A163 G164 G165 U166 U167 G168 C169 C170 U171 A172 A173 G174 G175 A176 G177 G178 G179 G180 U181 G182 A183 A184 C185 C186 G187 G188 C189 C190 C191 A192 G193 G194 U195 C196 G197 G198 A199 A200 A201 C202 G203 G204 A205 G206 C207 A208 G209 G210 U211 C212 A213 A214 A215 A216 C217 U218 C219 C220 C221 G222 U223 G224 C225 U226 G227 A228 U229 C230 A231 G232 U233 A234 G235 U236 G237 U238 CCC239
Unit 3 A49 G50 G51 C52 U53 G54 G55 A56 G57 G58 A59 U60 C61 G62 C63 U64 U65 G66 A67 G68 U69 C70 C71 A72 G73 G74 A75
Unit 4 C271 C272 U273 G274 U275 G276 C277 A278 A279 C280 A281 U282 A283 G284 C285 G286 A287 G288 A289 C290 C291 C292 C293 G294 U295 C296 U297 C298 U299 U300 U301
Unit 5 G76 U77 U78 C79 U80 G81 G82 G83 C84 U85 G86 U87 A88 G89 U90 G91 C92 G93 C94 U95 A96 U97 G98 C99
Unit 6 A252 A253 U254 A255 G256 C257 C258 A259 C260 U261 G262 C263 A264 C265 U266 C267 C268 A269 G270
Unit 7 C100 G101 A102 U103 C104 G105 G106 G107 U108 G109 U110 C111
Unit 8 A240 U241 C242 G243 C244 G245 C246 C247 U248 G249 U250 G251

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany