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Sequence, Chains, Asymmetric and Biological Units

Title YFIT FROM BACILLUS SUBTILIS IS A PROBABLE METAL-DEPENDENT HY WITH AN UNUSUAL FOUR-HELIX BUNDLE TOPOLOGY
Keywords NICKEL-BINDING, HYDROLASE, HELIX-BUNDLE, STRUCTURAL GENOMICS PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, METAL-BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1RXQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   YFIT  A 174 1407 24
2  Protein   YFIT  B 175 1414 24
3  Protein   YFIT  C 174 1407 24
4  Protein   YFIT  D 169 1366 24
5  Ligand   YFIT  A 1 0 1
6  Ligand   YFIT  B 1 0 1
7  Ligand   YFIT  C 1 0 1
8  Protein   YFIT  D 7 0 38
9 Water     469 0 469
total       1171 5594 606

Proteins
Unit 1 ASN5 LEU6 SER7 TYR8 PRO9 ILE10 GLY11 GLU12 TYR13 LYS14 PRO15 ARG16 GLU17 SER18 ILE19 SER20 LYS21 GLU22 GLN23 LYS24 ASP25 LYS26 TRP27 ILE28 GLN29 VAL30 LEU31 GLU32 GLU33 VAL34 PRO35 ALA36 LYS37 LEU38 LYS39 GLN40 ALA41 VAL42 GLU43 VAL44 MSE45 THR46 ASP47 SER48 GLN49 LEU50 ASP51 THR52 PRO53 TYR54 ARG55 ASP56 GLY57 GLY58 TRP59 THR60 VAL61 ARG62 GLN63 VAL64 VAL65 HIS66 HIS67 LEU68 ALA69 ASP70 SER71 HIS72 MSE73 ASN74 SER75 TYR76 ILE77 ARG78 PHE79 LYS80 LEU81 SER82 LEU83 THR84 GLU85 GLU86 THR87 PRO88 ALA89 ILE90 ARG91 PRO92 TYR93 ASP94 GLU95 LYS96 ALA97 TRP98 SER99 GLU100 LEU101 LYS102 ASP103 SER104 LYS105 THR106 ALA107 ASP108 PRO109 SER110 GLY111 SER112 LEU113 ALA114 LEU115 LEU116 GLN117 GLU118 LEU119 HIS120 GLY121 ARG122 TRP123 THR124 ALA125 LEU126 LEU127 ARG128 THR129 LEU130 THR131 ASP132 GLN133 GLN134 PHE135 LYS136 ARG137 GLY138 PHE139 TYR140 HIS141 PRO142 ASP143 THR144 LYS145 GLU146 ILE147 ILE148 THR149 LEU150 GLU151 ASN152 ALA153 LEU154 GLY155 LEU156 TYR157 VAL158 TRP159 HIS160 SER161 HIS162 HIS163 HIS164 ILE165 ALA166 HIS167 ILE168 THR169 GLU170 LEU171 SER172 ARG173 ARG174 MSE175 GLY176 TRP177 SER178
Unit 2 VAL4 ASN5 LEU6 SER7 TYR8 PRO9 ILE10 GLY11 GLU12 TYR13 LYS14 PRO15 ARG16 GLU17 SER18 ILE19 SER20 LYS21 GLU22 GLN23 LYS24 ASP25 LYS26 TRP27 ILE28 GLN29 VAL30 LEU31 GLU32 GLU33 VAL34 PRO35 ALA36 LYS37 LEU38 LYS39 GLN40 ALA41 VAL42 GLU43 VAL44 MSE45 THR46 ASP47 SER48 GLN49 LEU50 ASP51 THR52 PRO53 TYR54 ARG55 ASP56 GLY57 GLY58 TRP59 THR60 VAL61 ARG62 GLN63 VAL64 VAL65 HIS66 HIS67 LEU68 ALA69 ASP70 SER71 HIS72 MSE73 ASN74 SER75 TYR76 ILE77 ARG78 PHE79 LYS80 LEU81 SER82 LEU83 THR84 GLU85 GLU86 THR87 PRO88 ALA89 ILE90 ARG91 PRO92 TYR93 ASP94 GLU95 LYS96 ALA97 TRP98 SER99 GLU100 LEU101 LYS102 ASP103 SER104 LYS105 THR106 ALA107 ASP108 PRO109 SER110 GLY111 SER112 LEU113 ALA114 LEU115 LEU116 GLN117 GLU118 LEU119 HIS120 GLY121 ARG122 TRP123 THR124 ALA125 LEU126 LEU127 ARG128 THR129 LEU130 THR131 ASP132 GLN133 GLN134 PHE135 LYS136 ARG137 GLY138 PHE139 TYR140 HIS141 PRO142 ASP143 THR144 LYS145 GLU146 ILE147 ILE148 THR149 LEU150 GLU151 ASN152 ALA153 LEU154 GLY155 LEU156 TYR157 VAL158 TRP159 HIS160 SER161 HIS162 HIS163 HIS164 ILE165 ALA166 HIS167 ILE168 THR169 GLU170 LEU171 SER172 ARG173 ARG174 MSE175 GLY176 TRP177 SER178
Unit 3 ASN5 LEU6 SER7 TYR8 PRO9 ILE10 GLY11 GLU12 TYR13 LYS14 PRO15 ARG16 GLU17 SER18 ILE19 SER20 LYS21 GLU22 GLN23 LYS24 ASP25 LYS26 TRP27 ILE28 GLN29 VAL30 LEU31 GLU32 GLU33 VAL34 PRO35 ALA36 LYS37 LEU38 LYS39 GLN40 ALA41 VAL42 GLU43 VAL44 MSE45 THR46 ASP47 SER48 GLN49 LEU50 ASP51 THR52 PRO53 TYR54 ARG55 ASP56 GLY57 GLY58 TRP59 THR60 VAL61 ARG62 GLN63 VAL64 VAL65 HIS66 HIS67 LEU68 ALA69 ASP70 SER71 HIS72 MSE73 ASN74 SER75 TYR76 ILE77 ARG78 PHE79 LYS80 LEU81 SER82 LEU83 THR84 GLU85 GLU86 THR87 PRO88 ALA89 ILE90 ARG91 PRO92 TYR93 ASP94 GLU95 LYS96 ALA97 TRP98 SER99 GLU100 LEU101 LYS102 ASP103 SER104 LYS105 THR106 ALA107 ASP108 PRO109 SER110 GLY111 SER112 LEU113 ALA114 LEU115 LEU116 GLN117 GLU118 LEU119 HIS120 GLY121 ARG122 TRP123 THR124 ALA125 LEU126 LEU127 ARG128 THR129 LEU130 THR131 ASP132 GLN133 GLN134 PHE135 LYS136 ARG137 GLY138 PHE139 TYR140 HIS141 PRO142 ASP143 THR144 LYS145 GLU146 ILE147 ILE148 THR149 LEU150 GLU151 ASN152 ALA153 LEU154 GLY155 LEU156 TYR157 VAL158 TRP159 HIS160 SER161 HIS162 HIS163 HIS164 ILE165 ALA166 HIS167 ILE168 THR169 GLU170 LEU171 SER172 ARG173 ARG174 MSE175 GLY176 TRP177 SER178
Unit 4 ILE10 GLY11 GLU12 TYR13 LYS14 PRO15 ARG16 GLU17 SER18 ILE19 SER20 LYS21 GLU22 GLN23 LYS24 ASP25 LYS26 TRP27 ILE28 GLN29 VAL30 LEU31 GLU32 GLU33 VAL34 PRO35 ALA36 LYS37 LEU38 LYS39 GLN40 ALA41 VAL42 GLU43 VAL44 MSE45 THR46 ASP47 SER48 GLN49 LEU50 ASP51 THR52 PRO53 TYR54 ARG55 ASP56 GLY57 GLY58 TRP59 THR60 VAL61 ARG62 GLN63 VAL64 VAL65 HIS66 HIS67 LEU68 ALA69 ASP70 SER71 HIS72 MSE73 ASN74 SER75 TYR76 ILE77 ARG78 PHE79 LYS80 LEU81 SER82 LEU83 THR84 GLU85 GLU86 THR87 PRO88 ALA89 ILE90 ARG91 PRO92 TYR93 ASP94 GLU95 LYS96 ALA97 TRP98 SER99 GLU100 LEU101 LYS102 ASP103 SER104 LYS105 THR106 ALA107 ASP108 PRO109 SER110 GLY111 SER112 LEU113 ALA114 LEU115 LEU116 GLN117 GLU118 LEU119 HIS120 GLY121 ARG122 TRP123 THR124 ALA125 LEU126 LEU127 ARG128 THR129 LEU130 THR131 ASP132 GLN133 GLN134 PHE135 LYS136 ARG137 GLY138 PHE139 TYR140 HIS141 PRO142 ASP143 THR144 LYS145 GLU146 ILE147 ILE148 THR149 LEU150 GLU151 ASN152 ALA153 LEU154 GLY155 LEU156 TYR157 VAL158 TRP159 HIS160 SER161 HIS162 HIS163 HIS164 ILE165 ALA166 HIS167 ILE168 THR169 GLU170 LEU171 SER172 ARG173 ARG174 MSE175 GLY176 TRP177 SER178
Unit 8 NI300 GLU501 SER502 ALA503 THR504 SER505 GLY506

Ligands
Unit 5 NI300
Unit 6 NI300
Unit 7 NI300

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany