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Sequence, Chains, Asymmetric and Biological Units

Title MOLECULAR DYNAMICS SIMULATION OF MHC-PEPTIDE COMPLEXES AS A TOOL FOR PREDICTING POTENTIAL TCELL EPITOPES
Keywords HISTOCOMPATIBILITY ANTIGEN
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1ROJ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-B*2705)  A 183 1840 3
2  Protein    B 9 85 0
3 Water     2 0 6
total       194 1925 9

Proteins
Unit 1 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 HIS9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 THR24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 LEU32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 PRO43 ARG44 GLU45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 ARG62 GLU63 THR64 GLN65 ILE66 CYS67 LYS68 ALA69 LYS70 ALA71 GLN72 THR73 ASP74 ARG75 GLU76 ASP77 LEU78 ARG79 THR80 LEU81 LEU82 ARG83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 LEU95 GLN96 ASN97 MET98 TYR99 GLY100 CYS101 ASP102 VAL103 GLY104 PRO105 ASP106 GLY107 ARG108 LEU109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 ASP116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 ASN127 GLU128 ASP129 LEU130 SER131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 THR138 ALA139 ALA140 GLN141 ILE142 THR143 GLN144 ARG145 LYS146 TRP147 GLU148 ALA149 ALA150 ARG151 VAL152 ALA153 GLU154 GLN155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 GLU163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 ALA182 NME183
Unit 2 GLU1 ARG2 LEU3 ALA4 LYS5 LEU6 SER7 GLY8 GLY9

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany