1RM5 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF MUTANT S188A OF PHOTOSYNTHETIC GLYCERAL PHOSPHATE DEHYDROGENASE A4 ISOFORM, COMPLEXED WITH NADP
• Keywords: ROSSMANN FOLD, GAPDH-NADP COMPLEX, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1RM5	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A	O	337	2543	0
2	Protein	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A	A	337	2543	0
3	Protein	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A	B	337	2543	0
4	Ligand	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A	O	4	0	63
5	Ligand	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A	A	5	0	68
6	Ligand	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A	B	4	0	63
7	Water			481	0	481
total				1505	7629	675

Proteins

Unit 1	LYS 0 LEU 1 LYS 2 VAL 3 ALA 4 ILE 5 ASN 6 GLY 7 PHE 8 GLY 9 ARG 10 ILE 11 GLY 12 ARG 13 ASN 14 PHE 15 LEU 16 ARG 17 CYS 18 TRP 18A HIS 18B GLY 19 ARG 20 LYS 21 ASP 22 SER 23 PRO 24 LEU 25 ASP 26 VAL 27 VAL 28 VAL 29 ILE 30 ASN 31 ASP 32 THR 33 GLY 34 GLY 36 VAL 37 LYS 38 GLN 39 ALA 40 SER 41 HIS 42 LEU 43 LEU 44 LYS 45 TYR 46 ASP 47 SER 48 ILE 49 LEU 50 GLY 51 THR 52 PHE 53 ASP 54 ALA 55 ASP 56 VAL 57 LYS 58 THR 59 ALA 60 GLY 60A ASP 61 SER 62 ALA 63 ILE 64 SER 65 VAL 66 ASP 67 GLY 68 LYS 69 VAL 70 ILE 71 LYS 72 VAL 73 VAL 74 SER 75 ASP 76 ARG 77 ASN 78 PRO 79 VAL 80 ASN 81 LEU 82 PRO 83 TRP 84 GLY 85 ASP 86 MET 87 GLY 88 ILE 89 ASP 90 LEU 91 VAL 92 ILE 93 GLU 94 GLY 95 THR 96 GLY 97 VAL 98 PHE 99 VAL 100 ASP 101 ARG 102 ASP 103 GLY 104 ALA 105 GLY 106 LYS 107 HIS 108 LEU 109 GLN 110 ALA 111 GLY 112 ALA 113 LYS 114 LYS 115 VAL 116 LEU 117 ILE 118 THR 119 ALA 120 PRO 121 GLY 122 LYS 122A GLY 123 ASP 124 ILE 125 PRO 126 THR 127 TYR 128 VAL 129 VAL 130 GLY 131 VAL 132 ASN 133 GLU 134 GLU 135 GLY 136 TYR 137 THR 138 HIS 139 ALA 140 ASP 141 THR 142 ILE 143 ILE 144 SER 145 ASN 146 ALA 147 SER 148 CYS 149 THR 150 THR 151 ASN 152 CYS 153 LEU 154 ALA 155 PRO 156 PHE 157 VAL 158 LYS 159 VAL 160 LEU 161 ASP 162 GLN 163 LYS 164 PHE 165 GLY 166 ILE 167 ILE 168 LYS 169 GLY 170 THR 171 MET 172 THR 173 THR 174 THR 175 HIS 176 SER 177 TYR 178 THR 179 GLY 180 ASP 181 GLN 182 ARG 183 LEU 184 LEU 185 ASP 186 ALA 187 ALA 188 HIS 190 ARG 191 ASP 192 LEU 193 ARG 194 ARG 195 ALA 196 ARG 197 ALA 198 ALA 199 CYS 200 LEU 201 ASN 202 ILE 203 VAL 204 PRO 205 THR 206 SER 207 THR 208 GLY 209 ALA 210 ALA 211 LYS 212 ALA 213 VAL 214 ALA 215 LEU 216 VAL 217 LEU 218 PRO 219 ASN 220 LEU 221 LYS 222 GLY 223 LYS 224 LEU 225 ASN 226 GLY 227 ILE 228 ALA 229 LEU 230 ARG 231 VAL 232 PRO 233 THR 234 PRO 235 ASN 236 VAL 237 SER 238 VAL 239 VAL 240 ASP 241 LEU 242 VAL 243 VAL 244 GLN 245 VAL 246 SER 247 LYS 248 LYS 249 THR 250 PHE 251 ALA 252 GLU 253 GLU 254 VAL 255 ASN 256 ALA 257 ALA 258 PHE 259 ARG 260 GLU 261 SER 262 ALA 263 ASP 264 ASN 265 GLU 266 LEU 267 LYS 268 GLY 269 ILE 270 LEU 271 SER 272 VAL 273 CYS 274 ASP 275 GLU 276 PRO 277 LEU 278 VAL 279 SER 280 ILE 281 ASP 282 PHE 283 ARG 284 CYS 285 THR 286 ASP 287 VAL 288 SER 289 SER 290 THR 291 ILE 292 ASP 293 SER 294 SER 295 LEU 296 THR 297 MET 298 VAL 299 MET 300 GLY 301 ASP 302 ASP 303 MET 304 VAL 305 LYS 306 VAL 307 ILE 308 ALA 309 TRP 310 TYR 311 ASP 312 ASN 313 GLU 314 TRP 315 GLY 316 TYR 317 SER 318 GLN 319 ARG 320 VAL 321 VAL 322 ASP 323 LEU 324 ALA 325 ASP 326 ILE 327 VAL 328 ALA 329 ASN 330 LYS 331 TRP 332 GLN 333 ALA 334
Unit 2	LYS 0 LEU 1 LYS 2 VAL 3 ALA 4 ILE 5 ASN 6 GLY 7 PHE 8 GLY 9 ARG 10 ILE 11 GLY 12 ARG 13 ASN 14 PHE 15 LEU 16 ARG 17 CYS 18 TRP 18A HIS 18B GLY 19 ARG 20 LYS 21 ASP 22 SER 23 PRO 24 LEU 25 ASP 26 VAL 27 VAL 28 VAL 29 ILE 30 ASN 31 ASP 32 THR 33 GLY 34 GLY 36 VAL 37 LYS 38 GLN 39 ALA 40 SER 41 HIS 42 LEU 43 LEU 44 LYS 45 TYR 46 ASP 47 SER 48 ILE 49 LEU 50 GLY 51 THR 52 PHE 53 ASP 54 ALA 55 ASP 56 VAL 57 LYS 58 THR 59 ALA 60 GLY 60A ASP 61 SER 62 ALA 63 ILE 64 SER 65 VAL 66 ASP 67 GLY 68 LYS 69 VAL 70 ILE 71 LYS 72 VAL 73 VAL 74 SER 75 ASP 76 ARG 77 ASN 78 PRO 79 VAL 80 ASN 81 LEU 82 PRO 83 TRP 84 GLY 85 ASP 86 MET 87 GLY 88 ILE 89 ASP 90 LEU 91 VAL 92 ILE 93 GLU 94 GLY 95 THR 96 GLY 97 VAL 98 PHE 99 VAL 100 ASP 101 ARG 102 ASP 103 GLY 104 ALA 105 GLY 106 LYS 107 HIS 108 LEU 109 GLN 110 ALA 111 GLY 112 ALA 113 LYS 114 LYS 115 VAL 116 LEU 117 ILE 118 THR 119 ALA 120 PRO 121 GLY 122 LYS 122A GLY 123 ASP 124 ILE 125 PRO 126 THR 127 TYR 128 VAL 129 VAL 130 GLY 131 VAL 132 ASN 133 GLU 134 GLU 135 GLY 136 TYR 137 THR 138 HIS 139 ALA 140 ASP 141 THR 142 ILE 143 ILE 144 SER 145 ASN 146 ALA 147 SER 148 CYS 149 THR 150 THR 151 ASN 152 CYS 153 LEU 154 ALA 155 PRO 156 PHE 157 VAL 158 LYS 159 VAL 160 LEU 161 ASP 162 GLN 163 LYS 164 PHE 165 GLY 166 ILE 167 ILE 168 LYS 169 GLY 170 THR 171 MET 172 THR 173 THR 174 THR 175 HIS 176 SER 177 TYR 178 THR 179 GLY 180 ASP 181 GLN 182 ARG 183 LEU 184 LEU 185 ASP 186 ALA 187 ALA 188 HIS 190 ARG 191 ASP 192 LEU 193 ARG 194 ARG 195 ALA 196 ARG 197 ALA 198 ALA 199 CYS 200 LEU 201 ASN 202 ILE 203 VAL 204 PRO 205 THR 206 SER 207 THR 208 GLY 209 ALA 210 ALA 211 LYS 212 ALA 213 VAL 214 ALA 215 LEU 216 VAL 217 LEU 218 PRO 219 ASN 220 LEU 221 LYS 222 GLY 223 LYS 224 LEU 225 ASN 226 GLY 227 ILE 228 ALA 229 LEU 230 ARG 231 VAL 232 PRO 233 THR 234 PRO 235 ASN 236 VAL 237 SER 238 VAL 239 VAL 240 ASP 241 LEU 242 VAL 243 VAL 244 GLN 245 VAL 246 SER 247 LYS 248 LYS 249 THR 250 PHE 251 ALA 252 GLU 253 GLU 254 VAL 255 ASN 256 ALA 257 ALA 258 PHE 259 ARG 260 GLU 261 SER 262 ALA 263 ASP 264 ASN 265 GLU 266 LEU 267 LYS 268 GLY 269 ILE 270 LEU 271 SER 272 VAL 273 CYS 274 ASP 275 GLU 276 PRO 277 LEU 278 VAL 279 SER 280 ILE 281 ASP 282 PHE 283 ARG 284 CYS 285 THR 286 ASP 287 VAL 288 SER 289 SER 290 THR 291 ILE 292 ASP 293 SER 294 SER 295 LEU 296 THR 297 MET 298 VAL 299 MET 300 GLY 301 ASP 302 ASP 303 MET 304 VAL 305 LYS 306 VAL 307 ILE 308 ALA 309 TRP 310 TYR 311 ASP 312 ASN 313 GLU 314 TRP 315 GLY 316 TYR 317 SER 318 GLN 319 ARG 320 VAL 321 VAL 322 ASP 323 LEU 324 ALA 325 ASP 326 ILE 327 VAL 328 ALA 329 ASN 330 LYS 331 TRP 332 GLN 333 ALA 334
Unit 3	LYS 0 LEU 1 LYS 2 VAL 3 ALA 4 ILE 5 ASN 6 GLY 7 PHE 8 GLY 9 ARG 10 ILE 11 GLY 12 ARG 13 ASN 14 PHE 15 LEU 16 ARG 17 CYS 18 TRP 18A HIS 18B GLY 19 ARG 20 LYS 21 ASP 22 SER 23 PRO 24 LEU 25 ASP 26 VAL 27 VAL 28 VAL 29 ILE 30 ASN 31 ASP 32 THR 33 GLY 34 GLY 36 VAL 37 LYS 38 GLN 39 ALA 40 SER 41 HIS 42 LEU 43 LEU 44 LYS 45 TYR 46 ASP 47 SER 48 ILE 49 LEU 50 GLY 51 THR 52 PHE 53 ASP 54 ALA 55 ASP 56 VAL 57 LYS 58 THR 59 ALA 60 GLY 60A ASP 61 SER 62 ALA 63 ILE 64 SER 65 VAL 66 ASP 67 GLY 68 LYS 69 VAL 70 ILE 71 LYS 72 VAL 73 VAL 74 SER 75 ASP 76 ARG 77 ASN 78 PRO 79 VAL 80 ASN 81 LEU 82 PRO 83 TRP 84 GLY 85 ASP 86 MET 87 GLY 88 ILE 89 ASP 90 LEU 91 VAL 92 ILE 93 GLU 94 GLY 95 THR 96 GLY 97 VAL 98 PHE 99 VAL 100 ASP 101 ARG 102 ASP 103 GLY 104 ALA 105 GLY 106 LYS 107 HIS 108 LEU 109 GLN 110 ALA 111 GLY 112 ALA 113 LYS 114 LYS 115 VAL 116 LEU 117 ILE 118 THR 119 ALA 120 PRO 121 GLY 122 LYS 122A GLY 123 ASP 124 ILE 125 PRO 126 THR 127 TYR 128 VAL 129 VAL 130 GLY 131 VAL 132 ASN 133 GLU 134 GLU 135 GLY 136 TYR 137 THR 138 HIS 139 ALA 140 ASP 141 THR 142 ILE 143 ILE 144 SER 145 ASN 146 ALA 147 SER 148 CYS 149 THR 150 THR 151 ASN 152 CYS 153 LEU 154 ALA 155 PRO 156 PHE 157 VAL 158 LYS 159 VAL 160 LEU 161 ASP 162 GLN 163 LYS 164 PHE 165 GLY 166 ILE 167 ILE 168 LYS 169 GLY 170 THR 171 MET 172 THR 173 THR 174 THR 175 HIS 176 SER 177 TYR 178 THR 179 GLY 180 ASP 181 GLN 182 ARG 183 LEU 184 LEU 185 ASP 186 ALA 187 ALA 188 HIS 190 ARG 191 ASP 192 LEU 193 ARG 194 ARG 195 ALA 196 ARG 197 ALA 198 ALA 199 CYS 200 LEU 201 ASN 202 ILE 203 VAL 204 PRO 205 THR 206 SER 207 THR 208 GLY 209 ALA 210 ALA 211 LYS 212 ALA 213 VAL 214 ALA 215 LEU 216 VAL 217 LEU 218 PRO 219 ASN 220 LEU 221 LYS 222 GLY 223 LYS 224 LEU 225 ASN 226 GLY 227 ILE 228 ALA 229 LEU 230 ARG 231 VAL 232 PRO 233 THR 234 PRO 235 ASN 236 VAL 237 SER 238 VAL 239 VAL 240 ASP 241 LEU 242 VAL 243 VAL 244 GLN 245 VAL 246 SER 247 LYS 248 LYS 249 THR 250 PHE 251 ALA 252 GLU 253 GLU 254 VAL 255 ASN 256 ALA 257 ALA 258 PHE 259 ARG 260 GLU 261 SER 262 ALA 263 ASP 264 ASN 265 GLU 266 LEU 267 LYS 268 GLY 269 ILE 270 LEU 271 SER 272 VAL 273 CYS 274 ASP 275 GLU 276 PRO 277 LEU 278 VAL 279 SER 280 ILE 281 ASP 282 PHE 283 ARG 284 CYS 285 THR 286 ASP 287 VAL 288 SER 289 SER 290 THR 291 ILE 292 ASP 293 SER 294 SER 295 LEU 296 THR 297 MET 298 VAL 299 MET 300 GLY 301 ASP 302 ASP 303 MET 304 VAL 305 LYS 306 VAL 307 ILE 308 ALA 309 TRP 310 TYR 311 ASP 312 ASN 313 GLU 314 TRP 315 GLY 316 TYR 317 SER 318 GLN 319 ARG 320 VAL 321 VAL 322 ASP 323 LEU 324 ALA 325 ASP 326 ILE 327 VAL 328 ALA 329 ASN 330 LYS 331 TRP 332 GLN 333 ALA 334

Ligands

Unit 4	SO4 902 NDP 7335 SO4 7338 SO4 7339
Unit 5	SO4 901 SO4 903 NDP 1335 SO4 1338 SO4 1339
Unit 6	SO4 904 NDP 2335 SO4 2338 SO4 2339