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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE AT 1.8 ANGSTROM OF CDP-D-GLUCOSE 4,6- DEHYDRATASE FROM YERSINIA PSEUDOTUBERCULOSIS
Keywords DEHYDRATASE, SDR, CDP GLUCOSE DEHYDRATASE, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1RKX     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CDP-GLUCOSE-4,6-DEHYDRATASE  A 349 2785 0
2  Protein   CDP-GLUCOSE-4,6-DEHYDRATASE  B 346 2763 0
3  Protein   CDP-GLUCOSE-4,6-DEHYDRATASE  C 351 2802 0
4  Protein   CDP-GLUCOSE-4,6-DEHYDRATASE  D 347 2771 0
5  Ligand   CDP-GLUCOSE-4,6-DEHYDRATASE  A 1 0 44
6  Ligand   CDP-GLUCOSE-4,6-DEHYDRATASE  B 1 0 44
7  Ligand   CDP-GLUCOSE-4,6-DEHYDRATASE  C 1 0 44
8  Ligand   CDP-GLUCOSE-4,6-DEHYDRATASE  D 1 0 44
9 Water     862 0 862
total       2259 11121 1038
Proteins
Unit 1 ILE2 ASN3 ASN4 SER5 PHE6 TRP7 GLN8 GLY9 LYS10 ARG11 VAL12 PHE13 VAL14 THR15 GLY16 HIS17 THR18 GLY19 PHE20 LYS21 GLY22 GLY23 TRP24 LEU25 SER26 LEU27 TRP28 LEU29 GLN30 THR31 MET32 GLY33 ALA34 THR35 VAL36 LYS37 GLY38 TYR39 SER40 LEU41 THR42 ALA43 PRO44 THR45 VAL46 PRO47 SER48 LEU49 PHE50 GLU51 THR52 ALA53 ARG54 VAL55 ALA56 ASP57 GLY58 MET59 GLN60 SER61 GLU62 ILE63 GLY64 ASP65 ILE66 ARG67 ASP68 GLN69 ASN70 LYS71 LEU72 LEU73 GLU74 SER75 ILE76 ARG77 GLU78 PHE79 GLN80 PRO81 GLU82 ILE83 VAL84 PHE85 HIS86 MET87 ALA88 ALA89 GLN90 PRO91 LEU92 VAL93 ARG94 LEU95 SER96 TYR97 SER98 GLU99 PRO100 VAL101 GLU102 THR103 TYR104 SER105 THR106 ASN107 VAL108 MET109 GLY110 THR111 VAL112 TYR113 LEU114 LEU115 GLU116 ALA117 ILE118 ARG119 HIS120 VAL121 GLY122 GLY123 VAL124 LYS125 ALA126 VAL127 VAL128 ASN129 ILE130 THR131 SER132 ASP133 LYS134 CYS135 TYR136 ASP137 ASN138 LYS139 GLU140 TRP141 ILE142 TRP143 GLY144 TYR145 ARG146 GLU147 ASN148 GLU149 ALA150 MET151 GLY152 GLY153 TYR154 ASP155 PRO156 TYR157 SER158 ASN159 SER160 LYS161 GLY162 CYS163 ALA164 GLU165 LEU166 VAL167 THR168 SER169 SER170 TYR171 ARG172 ASN173 SER174 PHE175 PHE176 ASN177 PRO178 ALA179 ASN180 TYR181 GLY182 GLN183 HIS184 GLY185 THR186 ALA187 VAL188 ALA189 THR190 VAL191 ARG192 ALA193 GLY194 ASN195 VAL196 ILE197 GLY198 GLY199 GLY200 ASP201 TRP202 ALA203 LEU204 ASP205 ARG206 ILE207 VAL208 PRO209 ASP210 ILE211 LEU212 ARG213 ALA214 PHE215 GLU216 GLN217 SER218 GLN219 PRO220 VAL221 ILE222 ILE223 ARG224 ASN225 PRO226 HIS227 ALA228 ILE229 ARG230 PRO231 TRP232 GLN233 HIS234 VAL235 LEU236 GLU237 PRO238 LEU239 SER240 GLY241 TYR242 LEU243 LEU244 LEU245 ALA246 GLN247 LYS248 LEU249 TYR250 THR251 ASP252 GLY253 ALA254 GLU255 TYR256 ALA257 GLU258 GLY259 TRP260 ASN261 PHE262 GLY263 PRO264 ASN265 ASP266 ALA267 ASP268 ALA269 THR270 PRO271 VAL272 LYS273 ASN274 ILE275 VAL276 GLU277 GLN278 MET279 VAL280 LYS281 TYR282 TRP283 GLY284 GLU285 GLY286 ALA287 SER288 TRP289 GLN290 LEU291 GLU299 ALA300 HIS301 TYR302 LEU303 LYS304 LEU305 ASP306 CYS307 SER308 LYS309 ALA310 LYS311 MET312 GLN313 LEU314 GLY315 TRP316 HIS317 PRO318 ARG319 TRP320 ASN321 LEU322 ASN323 THR324 THR325 LEU326 GLU327 TYR328 ILE329 VAL330 GLY331 TRP332 HIS333 LYS334 ASN335 TRP336 LEU337 SER338 GLY339 THR340 ASP341 MET342 HIS343 GLU344 TYR345 SER346 ILE347 THR348 GLU349 ILE350 ASN351 ASN352 TYR353 MET354 ASN355 THR356 LYS357
Unit 2 ILE2 ASN3 ASN4 SER5 PHE6 TRP7 GLN8 GLY9 LYS10 ARG11 VAL12 PHE13 VAL14 THR15 GLY16 HIS17 THR18 GLY19 PHE20 LYS21 GLY22 GLY23 TRP24 LEU25 SER26 LEU27 TRP28 LEU29 GLN30 THR31 MET32 GLY33 ALA34 THR35 VAL36 LYS37 GLY38 TYR39 SER40 LEU41 THR42 ALA43 PRO44 THR45 VAL46 PRO47 SER48 LEU49 PHE50 GLU51 THR52 ALA53 ARG54 VAL55 ALA56 ASP57 GLY58 MET59 GLN60 SER61 GLU62 ILE63 GLY64 ASP65 ILE66 ARG67 ASP68 GLN69 ASN70 LYS71 LEU72 LEU73 GLU74 SER75 ILE76 ARG77 GLU78 PHE79 GLN80 PRO81 GLU82 ILE83 VAL84 PHE85 HIS86 MET87 ALA88 ALA89 GLN90 PRO91 LEU92 VAL93 ARG94 LEU95 SER96 TYR97 SER98 GLU99 PRO100 VAL101 GLU102 THR103 TYR104 SER105 THR106 ASN107 VAL108 MET109 GLY110 THR111 VAL112 TYR113 LEU114 LEU115 GLU116 ALA117 ILE118 ARG119 HIS120 VAL121 GLY122 GLY123 VAL124 LYS125 ALA126 VAL127 VAL128 ASN129 ILE130 THR131 SER132 ASP133 LYS134 CYS135 TYR136 ASP137 ASN138 LYS139 GLU140 TRP141 ILE142 TRP143 GLY144 TYR145 ARG146 GLU147 ASN148 GLU149 ALA150 MET151 GLY152 GLY153 TYR154 ASP155 PRO156 TYR157 SER158 ASN159 SER160 LYS161 GLY162 CYS163 ALA164 GLU165 LEU166 VAL167 THR168 SER169 SER170 TYR171 ARG172 ASN173 SER174 PHE175 PHE176 ASN177 PRO178 ALA179 ASN180 TYR181 GLY182 GLN183 HIS184 GLY185 THR186 ALA187 VAL188 ALA189 THR190 VAL191 ARG192 ALA193 GLY194 ASN195 VAL196 ILE197 GLY198 GLY199 GLY200 ASP201 TRP202 ALA203 LEU204 ASP205 ARG206 ILE207 VAL208 PRO209 ASP210 ILE211 LEU212 ARG213 ALA214 PHE215 GLU216 GLN217 SER218 GLN219 PRO220 VAL221 ILE222 ILE223 ARG224 ASN225 PRO226 HIS227 ALA228 ILE229 ARG230 PRO231 TRP232 GLN233 HIS234 VAL235 LEU236 GLU237 PRO238 LEU239 SER240 GLY241 TYR242 LEU243 LEU244 LEU245 ALA246 GLN247 LYS248 LEU249 TYR250 THR251 ASP252 GLY253 ALA254 GLU255 TYR256 ALA257 GLU258 GLY259 TRP260 ASN261 PHE262 GLY263 PRO264 ASN265 ASP266 ALA267 ASP268 ALA269 THR270 PRO271 VAL272 LYS273 ASN274 ILE275 VAL276 GLU277 GLN278 MET279 VAL280 LYS281 TYR282 TRP283 GLY284 GLU285 GLY286 ALA287 SER288 TRP289 GLN290 HIS301 TYR302 LEU303 LYS304 LEU305 ASP306 CYS307 SER308 LYS309 ALA310 LYS311 MET312 GLN313 LEU314 GLY315 TRP316 HIS317 PRO318 ARG319 TRP320 ASN321 LEU322 ASN323 THR324 THR325 LEU326 GLU327 TYR328 ILE329 VAL330 GLY331 TRP332 HIS333 LYS334 ASN335 TRP336 LEU337 SER338 GLY339 THR340 ASP341 MET342 HIS343 GLU344 TYR345 SER346 ILE347 THR348 GLU349 ILE350 ASN351 ASN352 TYR353 MET354 ASN355 THR356 LYS357
Unit 3 ILE2 ASN3 ASN4 SER5 PHE6 TRP7 GLN8 GLY9 LYS10 ARG11 VAL12 PHE13 VAL14 THR15 GLY16 HIS17 THR18 GLY19 PHE20 LYS21 GLY22 GLY23 TRP24 LEU25 SER26 LEU27 TRP28 LEU29 GLN30 THR31 MET32 GLY33 ALA34 THR35 VAL36 LYS37 GLY38 TYR39 SER40 LEU41 THR42 ALA43 PRO44 THR45 VAL46 PRO47 SER48 LEU49 PHE50 GLU51 THR52 ALA53 ARG54 VAL55 ALA56 ASP57 GLY58 MET59 GLN60 SER61 GLU62 ILE63 GLY64 ASP65 ILE66 ARG67 ASP68 GLN69 ASN70 LYS71 LEU72 LEU73 GLU74 SER75 ILE76 ARG77 GLU78 PHE79 GLN80 PRO81 GLU82 ILE83 VAL84 PHE85 HIS86 MET87 ALA88 ALA89 GLN90 PRO91 LEU92 VAL93 ARG94 LEU95 SER96 TYR97 SER98 GLU99 PRO100 VAL101 GLU102 THR103 TYR104 SER105 THR106 ASN107 VAL108 MET109 GLY110 THR111 VAL112 TYR113 LEU114 LEU115 GLU116 ALA117 ILE118 ARG119 HIS120 VAL121 GLY122 GLY123 VAL124 LYS125 ALA126 VAL127 VAL128 ASN129 ILE130 THR131 SER132 ASP133 LYS134 CYS135 TYR136 ASP137 ASN138 LYS139 GLU140 TRP141 ILE142 TRP143 GLY144 TYR145 ARG146 GLU147 ASN148 GLU149 ALA150 MET151 GLY152 GLY153 TYR154 ASP155 PRO156 TYR157 SER158 ASN159 SER160 LYS161 GLY162 CYS163 ALA164 GLU165 LEU166 VAL167 THR168 SER169 SER170 TYR171 ARG172 ASN173 SER174 PHE175 PHE176 ASN177 PRO178 ALA179 ASN180 TYR181 GLY182 GLN183 HIS184 GLY185 THR186 ALA187 VAL188 ALA189 THR190 VAL191 ARG192 ALA193 GLY194 ASN195 VAL196 ILE197 GLY198 GLY199 GLY200 ASP201 TRP202 ALA203 LEU204 ASP205 ARG206 ILE207 VAL208 PRO209 ASP210 ILE211 LEU212 ARG213 ALA214 PHE215 GLU216 GLN217 SER218 GLN219 PRO220 VAL221 ILE222 ILE223 ARG224 ASN225 PRO226 HIS227 ALA228 ILE229 ARG230 PRO231 TRP232 GLN233 HIS234 VAL235 LEU236 GLU237 PRO238 LEU239 SER240 GLY241 TYR242 LEU243 LEU244 LEU245 ALA246 GLN247 LYS248 LEU249 TYR250 THR251 ASP252 GLY253 ALA254 GLU255 TYR256 ALA257 GLU258 GLY259 TRP260 ASN261 PHE262 GLY263 PRO264 ASN265 ASP266 ALA267 ASP268 ALA269 THR270 PRO271 VAL272 LYS273 ASN274 ILE275 VAL276 GLU277 GLN278 MET279 VAL280 LYS281 TYR282 TRP283 GLY284 GLU285 GLY286 ALA287 SER288 TRP289 GLN290 LEU291 PRO297 HIS298 GLU299 ALA300 HIS301 TYR302 LEU303 LYS304 LEU305 ASP306 CYS307 SER308 LYS309 ALA310 LYS311 MET312 GLN313 LEU314 GLY315 TRP316 HIS317 PRO318 ARG319 TRP320 ASN321 LEU322 ASN323 THR324 THR325 LEU326 GLU327 TYR328 ILE329 VAL330 GLY331 TRP332 HIS333 LYS334 ASN335 TRP336 LEU337 SER338 GLY339 THR340 ASP341 MET342 HIS343 GLU344 TYR345 SER346 ILE347 THR348 GLU349 ILE350 ASN351 ASN352 TYR353 MET354 ASN355 THR356 LYS357
Unit 4 ILE2 ASN3 ASN4 SER5 PHE6 TRP7 GLN8 GLY9 LYS10 ARG11 VAL12 PHE13 VAL14 THR15 GLY16 HIS17 THR18 GLY19 PHE20 LYS21 GLY22 GLY23 TRP24 LEU25 SER26 LEU27 TRP28 LEU29 GLN30 THR31 MET32 GLY33 ALA34 THR35 VAL36 LYS37 GLY38 TYR39 SER40 LEU41 THR42 ALA43 PRO44 THR45 VAL46 PRO47 SER48 LEU49 PHE50 GLU51 THR52 ALA53 ARG54 VAL55 ALA56 ASP57 GLY58 MET59 GLN60 SER61 GLU62 ILE63 GLY64 ASP65 ILE66 ARG67 ASP68 GLN69 ASN70 LYS71 LEU72 LEU73 GLU74 SER75 ILE76 ARG77 GLU78 PHE79 GLN80 PRO81 GLU82 ILE83 VAL84 PHE85 HIS86 MET87 ALA88 ALA89 GLN90 PRO91 LEU92 VAL93 ARG94 LEU95 SER96 TYR97 SER98 GLU99 PRO100 VAL101 GLU102 THR103 TYR104 SER105 THR106 ASN107 VAL108 MET109 GLY110 THR111 VAL112 TYR113 LEU114 LEU115 GLU116 ALA117 ILE118 ARG119 HIS120 VAL121 GLY122 GLY123 VAL124 LYS125 ALA126 VAL127 VAL128 ASN129 ILE130 THR131 SER132 ASP133 LYS134 CYS135 TYR136 ASP137 ASN138 LYS139 GLU140 TRP141 ILE142 TRP143 GLY144 TYR145 ARG146 GLU147 ASN148 GLU149 ALA150 MET151 GLY152 GLY153 TYR154 ASP155 PRO156 TYR157 SER158 ASN159 SER160 LYS161 GLY162 CYS163 ALA164 GLU165 LEU166 VAL167 THR168 SER169 SER170 TYR171 ARG172 ASN173 SER174 PHE175 PHE176 ASN177 PRO178 ALA179 ASN180 TYR181 GLY182 GLN183 HIS184 GLY185 THR186 ALA187 VAL188 ALA189 THR190 VAL191 ARG192 ALA193 GLY194 ASN195 VAL196 ILE197 GLY198 GLY199 GLY200 ASP201 TRP202 ALA203 LEU204 ASP205 ARG206 ILE207 VAL208 PRO209 ASP210 ILE211 LEU212 ARG213 ALA214 PHE215 GLU216 GLN217 SER218 GLN219 PRO220 VAL221 ILE222 ILE223 ARG224 ASN225 PRO226 HIS227 ALA228 ILE229 ARG230 PRO231 TRP232 GLN233 HIS234 VAL235 LEU236 GLU237 PRO238 LEU239 SER240 GLY241 TYR242 LEU243 LEU244 LEU245 ALA246 GLN247 LYS248 LEU249 TYR250 THR251 ASP252 GLY253 ALA254 GLU255 TYR256 ALA257 GLU258 GLY259 TRP260 ASN261 PHE262 GLY263 PRO264 ASN265 ASP266 ALA267 ASP268 ALA269 THR270 PRO271 VAL272 LYS273 ASN274 ILE275 VAL276 GLU277 GLN278 MET279 VAL280 LYS281 TYR282 TRP283 GLY284 GLU285 GLY286 ALA287 SER288 TRP289 GLN290 LEU291 HIS301 TYR302 LEU303 LYS304 LEU305 ASP306 CYS307 SER308 LYS309 ALA310 LYS311 MET312 GLN313 LEU314 GLY315 TRP316 HIS317 PRO318 ARG319 TRP320 ASN321 LEU322 ASN323 THR324 THR325 LEU326 GLU327 TYR328 ILE329 VAL330 GLY331 TRP332 HIS333 LYS334 ASN335 TRP336 LEU337 SER338 GLY339 THR340 ASP341 MET342 HIS343 GLU344 TYR345 SER346 ILE347 THR348 GLU349 ILE350 ASN351 ASN352 TYR353 MET354 ASN355 THR356 LYS357
Ligands
Unit 5 NAD360
Unit 6 NAD360
Unit 7 NAD360
Unit 8 NAD360
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany