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Sequence, Chains, Asymmetric and Biological Units

Title SOLUTION STRUCTURE OF THE COMPLEX FORMED BY THE TWO N- TERMINAL RNA-BINDING DOMAINS OF NUCLEOLIN AND A PRE-RRNA TARGET
Keywords PROTEIN-RNA COMPLEX, RBD, TRANSCRIPTION/RNA COMPLEX
Experiment NMR
Number of Models  14


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1RKJ     released     available     available     Quaternary Structure Server  
NDB   1RKJ                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NUCLEOLIN  A 175 2733 0
2  RNA    B 21 670 0
total       196 3403 0

Proteins
Unit 1 GLY1 SER2 HIS3 MET4 VAL5 GLU6 GLY7 SER8 GLU9 SER10 THR11 THR12 PRO13 PHE14 ASN15 LEU16 PHE17 ILE18 GLY19 ASN20 LEU21 ASN22 PRO23 ASN24 LYS25 SER26 VAL27 ALA28 GLU29 LEU30 LYS31 VAL32 ALA33 ILE34 SER35 GLU36 LEU37 PHE38 ALA39 LYS40 ASN41 ASP42 LEU43 ALA44 VAL45 VAL46 ASP47 VAL48 ARG49 THR50 GLY51 THR52 ASN53 ARG54 LYS55 PHE56 GLY57 TYR58 VAL59 ASP60 PHE61 GLU62 SER63 ALA64 GLU65 ASP66 LEU67 GLU68 LYS69 ALA70 LEU71 GLU72 LEU73 THR74 GLY75 LEU76 LYS77 VAL78 PHE79 GLY80 ASN81 GLU82 ILE83 LYS84 LEU85 GLU86 LYS87 PRO88 LYS89 GLY90 ARG91 ASP92 SER93 LYS94 LYS95 VAL96 ARG97 ALA98 ALA99 ARG100 THR101 LEU102 LEU103 ALA104 LYS105 ASN106 LEU107 SER108 PHE109 ASN110 ILE111 THR112 GLU113 ASP114 GLU115 LEU116 LYS117 GLU118 VAL119 PHE120 GLU121 ASP122 ALA123 LEU124 GLU125 ILE126 ARG127 LEU128 VAL129 SER130 GLN131 ASP132 GLY133 LYS134 SER135 LYS136 GLY137 ILE138 ALA139 TYR140 ILE141 GLU142 PHE143 LYS144 SER145 GLU146 ALA147 ASP148 ALA149 GLU150 LYS151 ASN152 LEU153 GLU154 GLU155 LYS156 GLN157 GLY158 ALA159 GLU160 ILE161 ASP162 GLY163 ARG164 SER165 VAL166 SER167 LEU168 TYR169 TYR170 THR171 GLY172 GLU173 LYS174 GLY175

Nucleic acids
Unit 2 G1 G2 A3 U4 G5 C6 C7 U8 C9 C10 C11 G12 A13 G14 U15 G16 C17 A18 U19 C20 C21

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany