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Sequence, Chains, Asymmetric and Biological Units

Title THE INTERACTION BETWEEN MRNA AND TRNA (MODEL C2)
Keywords INTERACTION, MRNA, TRNA
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1RD1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 76 1966 459
2  RNA    B 76 1967 459
3  RNA    C 23 717 0
total       175 4650 918

Nucleic acids
Unit 1 G1 C2 G3 G4 A5 U6 U7 U8 A9 2MG10 C11 U12 C13 A14 G15 H2U16 H2U17 G18 G19 G20 A21 G22 A23 G24 C25 M2G26 C27 C28 A29 G30 A31 OMC32 U33 G34 C35 C36 YG37 A38 PSU39 5MC40 U41 G42 G43 A44 G45 7MG46 U47 C48 5MC49 U50 G51 U52 G53 5MU54 PSU55 C56 G57 1MA58 U59 C60 C61 A62 C63 A64 G65 A66 A67 U68 U69 C70 G71 C72 A73 C74 C75 A76
Unit 2 G1 C2 G3 G4 A5 U6 U7 U8 A9 2MG10 C11 U12 C13 A14 G15 H2U16 H2U17 G18 G19 G20 A21 G22 A23 G24 C25 M2G26 C27 C28 A29 G30 A31 OMC32 U33 U34 A35 G36 YG37 A38 PSU39 5MC40 U41 G42 G43 A44 G45 7MG46 U47 C48 5MC49 U50 G51 U52 G53 5MU54 PSU55 C56 G57 1MA58 U59 C60 C61 A62 C63 A64 G65 A66 A67 U68 U69 C70 G71 C72 A73 C74 C75 A76
Unit 3 G1 G2 C3 G4 G5 U6 U7 G8 C9 A10 G11 G12 U13 C14 U15 G16 C17 A18 C19 C20 G21 C22 C23

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany