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Title | GLYCEROL BOUND FORM OF THE B12-INDEPENDENT GLYCEROL DEHYDRAT CLOSTRIDIUM BUTYRICUM | |
Keywords | GLYCEROL DEHYDRATASE, RADICAL SAM, LYASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1R9D | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | GLYCEROL DEHYDRATASE | A | 786 | 6190 | 0 |
2 | Protein | GLYCEROL DEHYDRATASE | B | 786 | 6190 | 0 |
3 | Ligand | GLYCEROL DEHYDRATASE | A | 1 | 0 | 6 |
4 | Ligand | GLYCEROL DEHYDRATASE | B | 1 | 0 | 6 |
5 | Water | 969 | 0 | 969 | ||
total | 2543 | 12380 | 981 |
Unit 1 | ILE2 SER3 LYS4 GLY5 PHE6 SER7 THR8 GLN9 THR10 GLU11 ARG12 ILE13 ASN14 ILE15 LEU16 LYS17 ALA18 GLN19 ILE20 LEU21 ASN22 ALA23 LYS24 PRO25 CYS26 VAL27 GLU28 SER29 GLU30 ARG31 ALA32 ILE33 LEU34 ILE35 THR36 GLU37 SER38 PHE39 LYS40 GLN41 THR42 GLU43 GLY44 GLN45 PRO46 ALA47 ILE48 LEU49 ARG50 ARG51 ALA52 LEU53 ALA54 LEU55 LYS56 HIS57 ILE58 LEU59 GLU60 ASN61 ILE62 PRO63 ILE64 THR65 ILE66 ARG67 ASP68 GLN69 GLU70 LEU71 ILE72 VAL73 GLY74 SER75 LEU76 THR77 LYS78 GLU79 PRO80 ARG81 SER82 SER83 GLN84 VAL85 PHE86 PRO87 GLU88 PHE89 SER90 ASN91 LYS92 TRP93 LEU94 GLN95 ASP96 GLU97 LEU98 ASP99 ARG100 LEU101 ASN102 LYS103 ARG104 THR105 GLY106 ASP107 ALA108 PHE109 GLN110 ILE111 SER112 GLU113 GLU114 SER115 LYS116 GLU117 LYS118 LEU119 LYS120 ASP121 VAL122 PHE123 GLU124 TYR125 TRP126 ASN127 GLY128 LYS129 THR130 THR131 SER132 GLU133 LEU134 ALA135 THR136 SER137 TYR138 MET139 THR140 GLU141 GLU142 THR143 ARG144 GLU145 ALA146 VAL147 ASN148 CYS149 ASP150 VAL151 PHE152 THR153 VAL154 GLY155 ASN156 TYR157 TYR158 TYR159 ASN160 GLY161 VAL162 GLY163 HIS164 VAL165 SER166 VAL167 ASP168 TYR169 GLY170 LYS171 VAL172 LEU173 ARG174 VAL175 GLY176 PHE177 ASN178 GLY179 ILE180 ILE181 ASN182 GLU183 ALA184 LYS185 GLU186 GLN187 LEU188 GLU189 LYS190 ASN191 ARG192 SER193 ILE194 ASP195 PRO196 ASP197 PHE198 ILE199 LYS200 LYS201 GLU202 LYS203 PHE204 LEU205 ASN206 SER207 VAL208 ILE209 ILE210 SER211 CYS212 GLU213 ALA214 ALA215 ILE216 THR217 TYR218 VAL219 ASN220 ARG221 TYR222 ALA223 LYS224 LYS225 ALA226 LYS227 GLU228 ILE229 ALA230 ASP231 ASN232 THR233 SER234 ASP235 ALA236 LYS237 ARG238 LYS239 ALA240 GLU241 LEU242 ASN243 GLU244 ILE245 ALA246 LYS247 ILE248 CYS249 SER250 LYS251 VAL252 SER253 GLY254 GLU255 GLY256 ALA257 LYS258 SER259 PHE260 TYR261 GLU262 ALA263 CYS264 GLN265 LEU266 PHE267 TRP268 PHE269 ILE270 HIS271 ALA272 ILE273 ILE274 ASN275 ILE276 GLU277 SER278 ASN279 GLY280 HIS281 SER282 ILE283 SER284 PRO285 ALA286 ARG287 PHE288 ASP289 GLN290 TYR291 MET292 TYR293 PRO294 TYR295 TYR296 GLU297 ASN298 ASP299 LYS300 ASN301 ILE302 THR303 ASP304 LYS305 PHE306 ALA307 GLN308 GLU309 LEU310 ILE311 ASP312 CYS313 ILE314 TRP315 ILE316 LYS317 LEU318 ASN319 ASP320 ILE321 ASN322 LYS323 VAL324 ARG325 ASP326 GLU327 ILE328 SER329 THR330 LYS331 HIS332 PHE333 GLY334 GLY335 TYR336 PRO337 MET338 TYR339 GLN340 ASN341 LEU342 ILE343 VAL344 GLY345 GLY346 GLN347 ASN348 SER349 GLU350 GLY351 LYS352 ASP353 ALA354 THR355 ASN356 LYS357 VAL358 SER359 TYR360 MET361 ALA362 LEU363 GLU364 ALA365 ALA366 VAL367 HIS368 VAL369 LYS370 LEU371 PRO372 GLN373 PRO374 SER375 LEU376 SER377 VAL378 ARG379 ILE380 TRP381 ASN382 LYS383 THR384 PRO385 ASP386 GLU387 PHE388 LEU389 LEU390 ARG391 ALA392 ALA393 GLU394 LEU395 THR396 ARG397 GLU398 GLY399 LEU400 GLY401 LEU402 PRO403 ALA404 TYR405 TYR406 ASN407 ASP408 GLU409 VAL410 ILE411 ILE412 PRO413 ALA414 LEU415 VAL416 SER417 ARG418 GLY419 LEU420 THR421 LEU422 GLU423 ASP424 ALA425 ARG426 ASP427 TYR428 GLY429 ILE430 ILE431 GLY432 CYS433 VAL434 GLU435 PRO436 GLN437 LYS438 PRO439 GLY440 LYS441 THR442 GLU443 GLY444 TRP445 HIS446 ASP447 SER448 ALA449 PHE450 PHE451 ASN452 LEU453 ALA454 ARG455 ILE456 VAL457 GLU458 LEU459 THR460 ILE461 ASN462 SER463 GLY464 PHE465 ASP466 LYS467 ASN468 LYS469 GLN470 ILE471 GLY472 PRO473 LYS474 THR475 GLN476 ASN477 PHE478 GLU479 GLU480 MET481 LYS482 SER483 PHE484 ASP485 GLU486 PHE487 MET488 LYS489 ALA490 TYR491 LYS492 ALA493 GLN494 MET495 GLU496 TYR497 PHE498 VAL499 LYS500 HIS501 MET502 CYS503 CYS504 ALA505 ASP506 ASN507 CYS508 ILE509 ASP510 ILE511 ALA512 HIS513 ALA514 GLU515 ARG516 ALA517 PRO518 LEU519 PRO520 PHE521 LEU522 SER523 SER524 MET525 VAL526 ASP527 ASN528 CYS529 ILE530 GLY531 LYS532 GLY533 LYS534 SER535 LEU536 GLN537 ASP538 GLY539 GLY540 ALA541 GLU542 TYR543 ASN544 PHE545 SER546 GLY547 PRO548 GLN549 GLY550 VAL551 GLY552 VAL553 ALA554 ASN555 ILE556 GLY557 ASP558 SER559 LEU560 VAL561 ALA562 VAL563 LYS564 LYS565 ILE566 VAL567 PHE568 ASP569 GLU570 ASN571 LYS572 ILE573 THR574 PRO575 SER576 GLU577 LEU578 LYS579 LYS580 THR581 LEU582 ASN583 ASN584 ASP585 PHE586 LYS587 ASN588 SER589 GLU590 GLU591 ILE592 GLN593 ALA594 LEU595 LEU596 LYS597 ASN598 ALA599 PRO600 LYS601 PHE602 GLY603 ASN604 ASP605 ILE606 ASP607 GLU608 VAL609 ASP610 ASN611 LEU612 ALA613 ARG614 GLU615 GLY616 ALA617 LEU618 VAL619 TYR620 CYS621 ARG622 GLU623 VAL624 ASN625 LYS626 TYR627 THR628 ASN629 PRO630 ARG631 GLY632 GLY633 ASN634 PHE635 GLN636 PRO637 GLY638 LEU639 TYR640 PRO641 SER642 SER643 ILE644 ASN645 VAL646 TYR647 PHE648 GLY649 SER650 LEU651 THR652 GLY653 ALA654 THR655 PRO656 ASP657 GLY658 ARG659 LYS660 SER661 GLY662 GLN663 PRO664 LEU665 ALA666 ASP667 GLY668 VAL669 SER670 PRO671 SER672 ARG673 GLY674 CYS675 ASP676 VAL677 SER678 GLY679 PRO680 THR681 ALA682 ALA683 CYS684 ASN685 SER686 VAL687 SER688 LYS689 LEU690 ASP691 HIS692 PHE693 ILE694 ALA695 SER696 ASN697 GLY698 THR699 LEU700 PHE701 ASN702 GLN703 LYS704 PHE705 HIS706 PRO707 SER708 ALA709 LEU710 LYS711 GLY712 ASP713 ASN714 GLY715 LEU716 MET717 ASN718 LEU719 SER720 SER721 LEU722 ILE723 ARG724 SER725 TYR726 PHE727 ASP728 GLN729 LYS730 GLY731 PHE732 HIS733 VAL734 GLN735 PHE736 ASN737 VAL738 ILE739 ASP740 LYS741 LYS742 ILE743 LEU744 LEU745 ALA746 ALA747 GLN748 LYS749 ASN750 PRO751 GLU752 LYS753 TYR754 GLN755 ASP756 LEU757 ILE758 VAL759 ARG760 VAL761 ALA762 GLY763 TYR764 SER765 ALA766 GLN767 PHE768 ILE769 SER770 LEU771 ASP772 LYS773 SER774 ILE775 GLN776 ASN777 ASP778 ILE779 ILE780 ALA781 ARG782 THR783 GLU784 HIS785 VAL786 MET787 |
Unit 2 | ILE2 SER3 LYS4 GLY5 PHE6 SER7 THR8 GLN9 THR10 GLU11 ARG12 ILE13 ASN14 ILE15 LEU16 LYS17 ALA18 GLN19 ILE20 LEU21 ASN22 ALA23 LYS24 PRO25 CYS26 VAL27 GLU28 SER29 GLU30 ARG31 ALA32 ILE33 LEU34 ILE35 THR36 GLU37 SER38 PHE39 LYS40 GLN41 THR42 GLU43 GLY44 GLN45 PRO46 ALA47 ILE48 LEU49 ARG50 ARG51 ALA52 LEU53 ALA54 LEU55 LYS56 HIS57 ILE58 LEU59 GLU60 ASN61 ILE62 PRO63 ILE64 THR65 ILE66 ARG67 ASP68 GLN69 GLU70 LEU71 ILE72 VAL73 GLY74 SER75 LEU76 THR77 LYS78 GLU79 PRO80 ARG81 SER82 SER83 GLN84 VAL85 PHE86 PRO87 GLU88 PHE89 SER90 ASN91 LYS92 TRP93 LEU94 GLN95 ASP96 GLU97 LEU98 ASP99 ARG100 LEU101 ASN102 LYS103 ARG104 THR105 GLY106 ASP107 ALA108 PHE109 GLN110 ILE111 SER112 GLU113 GLU114 SER115 LYS116 GLU117 LYS118 LEU119 LYS120 ASP121 VAL122 PHE123 GLU124 TYR125 TRP126 ASN127 GLY128 LYS129 THR130 THR131 SER132 GLU133 LEU134 ALA135 THR136 SER137 TYR138 MET139 THR140 GLU141 GLU142 THR143 ARG144 GLU145 ALA146 VAL147 ASN148 CYS149 ASP150 VAL151 PHE152 THR153 VAL154 GLY155 ASN156 TYR157 TYR158 TYR159 ASN160 GLY161 VAL162 GLY163 HIS164 VAL165 SER166 VAL167 ASP168 TYR169 GLY170 LYS171 VAL172 LEU173 ARG174 VAL175 GLY176 PHE177 ASN178 GLY179 ILE180 ILE181 ASN182 GLU183 ALA184 LYS185 GLU186 GLN187 LEU188 GLU189 LYS190 ASN191 ARG192 SER193 ILE194 ASP195 PRO196 ASP197 PHE198 ILE199 LYS200 LYS201 GLU202 LYS203 PHE204 LEU205 ASN206 SER207 VAL208 ILE209 ILE210 SER211 CYS212 GLU213 ALA214 ALA215 ILE216 THR217 TYR218 VAL219 ASN220 ARG221 TYR222 ALA223 LYS224 LYS225 ALA226 LYS227 GLU228 ILE229 ALA230 ASP231 ASN232 THR233 SER234 ASP235 ALA236 LYS237 ARG238 LYS239 ALA240 GLU241 LEU242 ASN243 GLU244 ILE245 ALA246 LYS247 ILE248 CYS249 SER250 LYS251 VAL252 SER253 GLY254 GLU255 GLY256 ALA257 LYS258 SER259 PHE260 TYR261 GLU262 ALA263 CYS264 GLN265 LEU266 PHE267 TRP268 PHE269 ILE270 HIS271 ALA272 ILE273 ILE274 ASN275 ILE276 GLU277 SER278 ASN279 GLY280 HIS281 SER282 ILE283 SER284 PRO285 ALA286 ARG287 PHE288 ASP289 GLN290 TYR291 MET292 TYR293 PRO294 TYR295 TYR296 GLU297 ASN298 ASP299 LYS300 ASN301 ILE302 THR303 ASP304 LYS305 PHE306 ALA307 GLN308 GLU309 LEU310 ILE311 ASP312 CYS313 ILE314 TRP315 ILE316 LYS317 LEU318 ASN319 ASP320 ILE321 ASN322 LYS323 VAL324 ARG325 ASP326 GLU327 ILE328 SER329 THR330 LYS331 HIS332 PHE333 GLY334 GLY335 TYR336 PRO337 MET338 TYR339 GLN340 ASN341 LEU342 ILE343 VAL344 GLY345 GLY346 GLN347 ASN348 SER349 GLU350 GLY351 LYS352 ASP353 ALA354 THR355 ASN356 LYS357 VAL358 SER359 TYR360 MET361 ALA362 LEU363 GLU364 ALA365 ALA366 VAL367 HIS368 VAL369 LYS370 LEU371 PRO372 GLN373 PRO374 SER375 LEU376 SER377 VAL378 ARG379 ILE380 TRP381 ASN382 LYS383 THR384 PRO385 ASP386 GLU387 PHE388 LEU389 LEU390 ARG391 ALA392 ALA393 GLU394 LEU395 THR396 ARG397 GLU398 GLY399 LEU400 GLY401 LEU402 PRO403 ALA404 TYR405 TYR406 ASN407 ASP408 GLU409 VAL410 ILE411 ILE412 PRO413 ALA414 LEU415 VAL416 SER417 ARG418 GLY419 LEU420 THR421 LEU422 GLU423 ASP424 ALA425 ARG426 ASP427 TYR428 GLY429 ILE430 ILE431 GLY432 CYS433 VAL434 GLU435 PRO436 GLN437 LYS438 PRO439 GLY440 LYS441 THR442 GLU443 GLY444 TRP445 HIS446 ASP447 SER448 ALA449 PHE450 PHE451 ASN452 LEU453 ALA454 ARG455 ILE456 VAL457 GLU458 LEU459 THR460 ILE461 ASN462 SER463 GLY464 PHE465 ASP466 LYS467 ASN468 LYS469 GLN470 ILE471 GLY472 PRO473 LYS474 THR475 GLN476 ASN477 PHE478 GLU479 GLU480 MET481 LYS482 SER483 PHE484 ASP485 GLU486 PHE487 MET488 LYS489 ALA490 TYR491 LYS492 ALA493 GLN494 MET495 GLU496 TYR497 PHE498 VAL499 LYS500 HIS501 MET502 CYS503 CYS504 ALA505 ASP506 ASN507 CYS508 ILE509 ASP510 ILE511 ALA512 HIS513 ALA514 GLU515 ARG516 ALA517 PRO518 LEU519 PRO520 PHE521 LEU522 SER523 SER524 MET525 VAL526 ASP527 ASN528 CYS529 ILE530 GLY531 LYS532 GLY533 LYS534 SER535 LEU536 GLN537 ASP538 GLY539 GLY540 ALA541 GLU542 TYR543 ASN544 PHE545 SER546 GLY547 PRO548 GLN549 GLY550 VAL551 GLY552 VAL553 ALA554 ASN555 ILE556 GLY557 ASP558 SER559 LEU560 VAL561 ALA562 VAL563 LYS564 LYS565 ILE566 VAL567 PHE568 ASP569 GLU570 ASN571 LYS572 ILE573 THR574 PRO575 SER576 GLU577 LEU578 LYS579 LYS580 THR581 LEU582 ASN583 ASN584 ASP585 PHE586 LYS587 ASN588 SER589 GLU590 GLU591 ILE592 GLN593 ALA594 LEU595 LEU596 LYS597 ASN598 ALA599 PRO600 LYS601 PHE602 GLY603 ASN604 ASP605 ILE606 ASP607 GLU608 VAL609 ASP610 ASN611 LEU612 ALA613 ARG614 GLU615 GLY616 ALA617 LEU618 VAL619 TYR620 CYS621 ARG622 GLU623 VAL624 ASN625 LYS626 TYR627 THR628 ASN629 PRO630 ARG631 GLY632 GLY633 ASN634 PHE635 GLN636 PRO637 GLY638 LEU639 TYR640 PRO641 SER642 SER643 ILE644 ASN645 VAL646 TYR647 PHE648 GLY649 SER650 LEU651 THR652 GLY653 ALA654 THR655 PRO656 ASP657 GLY658 ARG659 LYS660 SER661 GLY662 GLN663 PRO664 LEU665 ALA666 ASP667 GLY668 VAL669 SER670 PRO671 SER672 ARG673 GLY674 CYS675 ASP676 VAL677 SER678 GLY679 PRO680 THR681 ALA682 ALA683 CYS684 ASN685 SER686 VAL687 SER688 LYS689 LEU690 ASP691 HIS692 PHE693 ILE694 ALA695 SER696 ASN697 GLY698 THR699 LEU700 PHE701 ASN702 GLN703 LYS704 PHE705 HIS706 PRO707 SER708 ALA709 LEU710 LYS711 GLY712 ASP713 ASN714 GLY715 LEU716 MET717 ASN718 LEU719 SER720 SER721 LEU722 ILE723 ARG724 SER725 TYR726 PHE727 ASP728 GLN729 LYS730 GLY731 PHE732 HIS733 VAL734 GLN735 PHE736 ASN737 VAL738 ILE739 ASP740 LYS741 LYS742 ILE743 LEU744 LEU745 ALA746 ALA747 GLN748 LYS749 ASN750 PRO751 GLU752 LYS753 TYR754 GLN755 ASP756 LEU757 ILE758 VAL759 ARG760 VAL761 ALA762 GLY763 TYR764 SER765 ALA766 GLN767 PHE768 ILE769 SER770 LEU771 ASP772 LYS773 SER774 ILE775 GLN776 ASN777 ASP778 ILE779 ILE780 ALA781 ARG782 THR783 GLU784 HIS785 VAL786 MET787 |
Unit 3 | GOL1801 |
Unit 4 | GOL1802 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |