1R8W - Sequence, Chains, Asymmetric and Biological Units

• Title: NATIVE STRUCTURE OF THE B12-INDEPENDENT GLYCEROL DEHYDRATASE FROM CLOSTRIDIUM BUTYRICUM
• Keywords: GLYCEROL DEHYDRATASE, RADICAL SAM, LYASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1R8W	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GLYCEROL DEHYDRATASE	A	786	6191	0
2	Protein	GLYCEROL DEHYDRATASE	B	786	6191	0
3	Water			511	0	511
total				2083	12382	511

Proteins

Unit 1

ILE 2 SER 3 LYS 4 GLY 5 PHE 6 SER 7 THR 8 GLN 9 THR 10 GLU 11 ARG 12 ILE 13 ASN 14 ILE 15 LEU 16 LYS 17 ALA 18 GLN 19 ILE 20 LEU 21 ASN 22 ALA 23 LYS 24 PRO 25 CYS 26 VAL 27 GLU 28 SER 29 GLU 30 ARG 31 ALA 32 ILE 33 LEU 34 ILE 35 THR 36 GLU 37 SER 38 PHE 39 LYS 40 GLN 41 THR 42 GLU 43 GLY 44 GLN 45 PRO 46 ALA 47 ILE 48 LEU 49 ARG 50 ARG 51 ALA 52 LEU 53 ALA 54 LEU 55 LYS 56 HIS 57 ILE 58 LEU 59 GLU 60 ASN 61 ILE 62 PRO 63 ILE 64 THR 65 ILE 66 ARG 67 ASP 68 GLN 69 GLU 70 LEU 71 ILE 72 VAL 73 GLY 74 SER 75 LEU 76 THR 77 LYS 78 GLU 79 PRO 80 ARG 81 SER 82 SER 83 GLN 84 VAL 85 PHE 86 PRO 87 GLU 88 PHE 89 SER 90 ASN 91 LYS 92 TRP 93 LEU 94 GLN 95 ASP 96 GLU 97 LEU 98 ASP 99 ARG 100 LEU 101 ASN 102 LYS 103 ARG 104 THR 105 GLY 106 ASP 107 ALA 108 PHE 109 GLN 110 ILE 111 SER 112 GLU 113 GLU 114 SER 115 LYS 116 GLU 117 LYS 118 LEU 119 LYS 120 ASP 121 VAL 122 PHE 123 GLU 124 TYR 125 TRP 126 ASN 127 GLY 128 LYS 129 THR 130 THR 131 SER 132 GLU 133 LEU 134 ALA 135 THR 136 SER 137 TYR 138 MET 139 THR 140 GLU 141 GLU 142 THR 143 ARG 144 GLU 145 ALA 146 VAL 147 ASN 148 CYS 149 ASP 150 VAL 151 PHE 152 THR 153 VAL 154 GLY 155 ASN 156 TYR 157 TYR 158 TYR 159 ASN 160 GLY 161 VAL 162 GLY 163 HIS 164 VAL 165 SER 166 VAL 167 ASP 168 TYR 169 GLY 170 LYS 171 VAL 172 LEU 173 ARG 174 VAL 175 GLY 176 PHE 177 ASN 178 GLY 179 ILE 180 ILE 181 ASN 182 GLU 183 ALA 184 LYS 185 GLU 186 GLN 187 LEU 188 GLU 189 LYS 190 ASN 191 ARG 192 SER 193 ILE 194 ASP 195 PRO 196 ASP 197 PHE 198 ILE 199 LYS 200 LYS 201 GLU 202 LYS 203 PHE 204 LEU 205 ASN 206 SER 207 VAL 208 ILE 209 ILE 210 SER 211 CYS 212 GLU 213 ALA 214 ALA 215 ILE 216 THR 217 TYR 218 VAL 219 ASN 220 ARG 221 TYR 222 ALA 223 LYS 224 LYS 225 ALA 226 LYS 227 GLU 228 ILE 229 ALA 230 ASP 231 ASN 232 THR 233 SER 234 ASP 235 ALA 236 LYS 237 ARG 238 LYS 239 ALA 240 GLU 241 LEU 242 ASN 243 GLU 244 ILE 245 ALA 246 LYS 247 ILE 248 CYS 249 SER 250 LYS 251 VAL 252 SER 253 GLY 254 GLU 255 GLY 256 ALA 257 LYS 258 SER 259 PHE 260 TYR 261 GLU 262 ALA 263 CYS 264 GLN 265 LEU 266 PHE 267 TRP 268 PHE 269 ILE 270 HIS 271 ALA 272 ILE 273 ILE 274 ASN 275 ILE 276 GLU 277 SER 278 ASN 279 GLY 280 HIS 281 SER 282 ILE 283 SER 284 PRO 285 ALA 286 ARG 287 PHE 288 ASP 289 GLN 290 TYR 291 MET 292 TYR 293 PRO 294 TYR 295 TYR 296 GLU 297 ASN 298 ASP 299 LYS 300 ASN 301 ILE 302 THR 303 ASP 304 LYS 305 PHE 306 ALA 307 GLN 308 GLU 309 LEU 310 ILE 311 ASP 312 CYS 313 ILE 314 TRP 315 ILE 316 LYS 317 LEU 318 ASN 319 ASP 320 ILE 321 ASN 322 LYS 323 VAL 324 ARG 325 ASP 326 GLU 327 ILE 328 SER 329 THR 330 LYS 331 HIS 332 PHE 333 GLY 334 GLY 335 TYR 336 PRO 337 MET 338 TYR 339 GLN 340 ASN 341 LEU 342 ILE 343 VAL 344 GLY 345 GLY 346 GLN 347 ASN 348 SER 349 GLU 350 GLY 351 LYS 352 ASP 353 ALA 354 THR 355 ASN 356 LYS 357 VAL 358 SER 359 TYR 360 MET 361 ALA 362 LEU 363 GLU 364 ALA 365 ALA 366 VAL 367 HIS 368 VAL 369 LYS 370 LEU 371 PRO 372 GLN 373 PRO 374 SER 375 LEU 376 SER 377 VAL 378 ARG 379 ILE 380 TRP 381 ASN 382 LYS 383 THR 384 PRO 385 ASP 386 GLU 387 PHE 388 LEU 389 LEU 390 ARG 391 ALA 392 ALA 393 GLU 394 LEU 395 THR 396 ARG 397 GLU 398 GLY 399 LEU 400 GLY 401 LEU 402 PRO 403 ALA 404 TYR 405 TYR 406 ASN 407 ASP 408 GLU 409 VAL 410 ILE 411 ILE 412 PRO 413 ALA 414 LEU 415 VAL 416 SER 417 ARG 418 GLY 419 LEU 420 THR 421 LEU 422 GLU 423 ASP 424 ALA 425 ARG 426 ASP 427 TYR 428 GLY 429 ILE 430 ILE 431 GLY 432 CYS 433 VAL 434 GLU 435 PRO 436 GLN 437 LYS 438 PRO 439 GLY 440 LYS 441 THR 442 GLU 443 GLY 444 TRP 445 HIS 446 ASP 447 SER 448 ALA 449 PHE 450 PHE 451 ASN 452 LEU 453 ALA 454 ARG 455 ILE 456 VAL 457 GLU 458 LEU 459 THR 460 ILE 461 ASN 462 SER 463 GLY 464 PHE 465 ASP 466 LYS 467 ASN 468 LYS 469 GLN 470 ILE 471 GLY 472 PRO 473 LYS 474 THR 475 GLN 476 ASN 477 PHE 478 GLU 479 GLU 480 MET 481 LYS 482 SER 483 PHE 484 ASP 485 GLU 486 PHE 487 MET 488 LYS 489 ALA 490 TYR 491 LYS 492 ALA 493 GLN 494 MET 495 GLU 496 TYR 497 PHE 498 VAL 499 LYS 500 HIS 501 MET 502 CYS 503 CYS 504 ALA 505 ASP 506 ASN 507 CYS 508 ILE 509 ASP 510 ILE 511 ALA 512 HIS 513 ALA 514 GLU 515 ARG 516 ALA 517 PRO 518 LEU 519 PRO 520 PHE 521 LEU 522 SER 523 SER 524 MET 525 VAL 526 ASP 527 ASN 528 CYS 529 ILE 530 GLY 531 LYS 532 GLY 533 LYS 534 SER 535 LEU 536 GLN 537 ASP 538 GLY 539 GLY 540 ALA 541 GLU 542 TYR 543 ASN 544 PHE 545 SER 546 GLY 547 PRO 548 GLN 549 GLY 550 VAL 551 GLY 552 VAL 553 ALA 554 ASN 555 ILE 556 GLY 557 ASP 558 SER 559 LEU 560 VAL 561 ALA 562 VAL 563 LYS 564 LYS 565 ILE 566 VAL 567 PHE 568 ASP 569 GLU 570 ASN 571 LYS 572 ILE 573 THR 574 PRO 575 SER 576 GLU 577 LEU 578 LYS 579 LYS 580 THR 581 LEU 582 ASN 583 ASN 584 ASP 585 PHE 586 LYS 587 ASN 588 SER 589 GLU 590 GLU 591 ILE 592 GLN 593 ALA 594 LEU 595 LEU 596 LYS 597 ASN 598 ALA 599 PRO 600 LYS 601 PHE 602 GLY 603 ASN 604 ASP 605 ILE 606 ASP 607 GLU 608 VAL 609 ASP 610 ASN 611 LEU 612 ALA 613 ARG 614 GLU 615 GLY 616 ALA 617 LEU 618 VAL 619 TYR 620 CYS 621 ARG 622 GLU 623 VAL 624 ASN 625 LYS 626 TYR 627 THR 628 ASN 629 PRO 630 ARG 631 GLY 632 GLY 633 ASN 634 PHE 635 GLN 636 PRO 637 GLY 638 LEU 639 TYR 640 PRO 641 SER 642 SER 643 ILE 644 ASN 645 VAL 646 TYR 647 PHE 648 GLY 649 SER 650 LEU 651 THR 652 GLY 653 ALA 654 THR 655 PRO 656 ASP 657 GLY 658 ARG 659 LYS 660 SER 661 GLY 662 GLN 663 PRO 664 LEU 665 ALA 666 ASP 667 GLY 668 VAL 669 SER 670 PRO 671 SER 672 ARG 673 GLY 674 CYS 675 ASP 676 VAL 677 SER 678 GLY 679 PRO 680 THR 681 ALA 682 ALA 683 CYS 684 ASN 685 SER 686 VAL 687 SER 688 LYS 689 LEU 690 ASP 691 HIS 692 PHE 693 ILE 694 ALA 695 SER 696 ASN 697 GLY 698 THR 699 LEU 700 PHE 701 ASN 702 GLN 703 LYS 704 PHE 705 HIS 706 PRO 707 SER 708 ALA 709 LEU 710 LYS 711 GLY 712 ASP 713 ASN 714 GLY 715 LEU 716 MET 717 ASN 718 LEU 719 SER 720 SER 721 LEU 722 ILE 723 ARG 724 SER 725 TYR 726 PHE 727 ASP 728 GLN 729 LYS 730 GLY 731 PHE 732 HIS 733 VAL 734 GLN 735 PHE 736 ASN 737 VAL 738 ILE 739 ASP 740 LYS 741 LYS 742 ILE 743 LEU 744 LEU 745 ALA 746 ALA 747 GLN 748 LYS 749 ASN 750 PRO 751 GLU 752 LYS 753 TYR 754 GLN 755 ASP 756 LEU 757 ILE 758 VAL 759 ARG 760 VAL 761 ALA 762 GLY 763 TYR 764 SER 765 ALA 766 GLN 767 PHE 768 ILE 769 SER 770 LEU 771 ASP 772 LYS 773 SER 774 ILE 775 GLN 776 ASN 777 ASP 778 ILE 779 ILE 780 ALA 781 ARG 782 THR 783 GLU 784 HIS 785 VAL 786 MET 787

Unit 2

ILE 2 SER 3 LYS 4 GLY 5 PHE 6 SER 7 THR 8 GLN 9 THR 10 GLU 11 ARG 12 ILE 13 ASN 14 ILE 15 LEU 16 LYS 17 ALA 18 GLN 19 ILE 20 LEU 21 ASN 22 ALA 23 LYS 24 PRO 25 CYS 26 VAL 27 GLU 28 SER 29 GLU 30 ARG 31 ALA 32 ILE 33 LEU 34 ILE 35 THR 36 GLU 37 SER 38 PHE 39 LYS 40 GLN 41 THR 42 GLU 43 GLY 44 GLN 45 PRO 46 ALA 47 ILE 48 LEU 49 ARG 50 ARG 51 ALA 52 LEU 53 ALA 54 LEU 55 LYS 56 HIS 57 ILE 58 LEU 59 GLU 60 ASN 61 ILE 62 PRO 63 ILE 64 THR 65 ILE 66 ARG 67 ASP 68 GLN 69 GLU 70 LEU 71 ILE 72 VAL 73 GLY 74 SER 75 LEU 76 THR 77 LYS 78 GLU 79 PRO 80 ARG 81 SER 82 SER 83 GLN 84 VAL 85 PHE 86 PRO 87 GLU 88 PHE 89 SER 90 ASN 91 LYS 92 TRP 93 LEU 94 GLN 95 ASP 96 GLU 97 LEU 98 ASP 99 ARG 100 LEU 101 ASN 102 LYS 103 ARG 104 THR 105 GLY 106 ASP 107 ALA 108 PHE 109 GLN 110 ILE 111 SER 112 GLU 113 GLU 114 SER 115 LYS 116 GLU 117 LYS 118 LEU 119 LYS 120 ASP 121 VAL 122 PHE 123 GLU 124 TYR 125 TRP 126 ASN 127 GLY 128 LYS 129 THR 130 THR 131 SER 132 GLU 133 LEU 134 ALA 135 THR 136 SER 137 TYR 138 MET 139 THR 140 GLU 141 GLU 142 THR 143 ARG 144 GLU 145 ALA 146 VAL 147 ASN 148 CYS 149 ASP 150 VAL 151 PHE 152 THR 153 VAL 154 GLY 155 ASN 156 TYR 157 TYR 158 TYR 159 ASN 160 GLY 161 VAL 162 GLY 163 HIS 164 VAL 165 SER 166 VAL 167 ASP 168 TYR 169 GLY 170 LYS 171 VAL 172 LEU 173 ARG 174 VAL 175 GLY 176 PHE 177 ASN 178 GLY 179 ILE 180 ILE 181 ASN 182 GLU 183 ALA 184 LYS 185 GLU 186 GLN 187 LEU 188 GLU 189 LYS 190 ASN 191 ARG 192 SER 193 ILE 194 ASP 195 PRO 196 ASP 197 PHE 198 ILE 199 LYS 200 LYS 201 GLU 202 LYS 203 PHE 204 LEU 205 ASN 206 SER 207 VAL 208 ILE 209 ILE 210 SER 211 CYS 212 GLU 213 ALA 214 ALA 215 ILE 216 THR 217 TYR 218 VAL 219 ASN 220 ARG 221 TYR 222 ALA 223 LYS 224 LYS 225 ALA 226 LYS 227 GLU 228 ILE 229 ALA 230 ASP 231 ASN 232 THR 233 SER 234 ASP 235 ALA 236 LYS 237 ARG 238 LYS 239 ALA 240 GLU 241 LEU 242 ASN 243 GLU 244 ILE 245 ALA 246 LYS 247 ILE 248 CYS 249 SER 250 LYS 251 VAL 252 SER 253 GLY 254 GLU 255 GLY 256 ALA 257 LYS 258 SER 259 PHE 260 TYR 261 GLU 262 ALA 263 CYS 264 GLN 265 LEU 266 PHE 267 TRP 268 PHE 269 ILE 270 HIS 271 ALA 272 ILE 273 ILE 274 ASN 275 ILE 276 GLU 277 SER 278 ASN 279 GLY 280 HIS 281 SER 282 ILE 283 SER 284 PRO 285 ALA 286 ARG 287 PHE 288 ASP 289 GLN 290 TYR 291 MET 292 TYR 293 PRO 294 TYR 295 TYR 296 GLU 297 ASN 298 ASP 299 LYS 300 ASN 301 ILE 302 THR 303 ASP 304 LYS 305 PHE 306 ALA 307 GLN 308 GLU 309 LEU 310 ILE 311 ASP 312 CYS 313 ILE 314 TRP 315 ILE 316 LYS 317 LEU 318 ASN 319 ASP 320 ILE 321 ASN 322 LYS 323 VAL 324 ARG 325 ASP 326 GLU 327 ILE 328 SER 329 THR 330 LYS 331 HIS 332 PHE 333 GLY 334 GLY 335 TYR 336 PRO 337 MET 338 TYR 339 GLN 340 ASN 341 LEU 342 ILE 343 VAL 344 GLY 345 GLY 346 GLN 347 ASN 348 SER 349 GLU 350 GLY 351 LYS 352 ASP 353 ALA 354 THR 355 ASN 356 LYS 357 VAL 358 SER 359 TYR 360 MET 361 ALA 362 LEU 363 GLU 364 ALA 365 ALA 366 VAL 367 HIS 368 VAL 369 LYS 370 LEU 371 PRO 372 GLN 373 PRO 374 SER 375 LEU 376 SER 377 VAL 378 ARG 379 ILE 380 TRP 381 ASN 382 LYS 383 THR 384 PRO 385 ASP 386 GLU 387 PHE 388 LEU 389 LEU 390 ARG 391 ALA 392 ALA 393 GLU 394 LEU 395 THR 396 ARG 397 GLU 398 GLY 399 LEU 400 GLY 401 LEU 402 PRO 403 ALA 404 TYR 405 TYR 406 ASN 407 ASP 408 GLU 409 VAL 410 ILE 411 ILE 412 PRO 413 ALA 414 LEU 415 VAL 416 SER 417 ARG 418 GLY 419 LEU 420 THR 421 LEU 422 GLU 423 ASP 424 ALA 425 ARG 426 ASP 427 TYR 428 GLY 429 ILE 430 ILE 431 GLY 432 CYS 433 VAL 434 GLU 435 PRO 436 GLN 437 LYS 438 PRO 439 GLY 440 LYS 441 THR 442 GLU 443 GLY 444 TRP 445 HIS 446 ASP 447 SER 448 ALA 449 PHE 450 PHE 451 ASN 452 LEU 453 ALA 454 ARG 455 ILE 456 VAL 457 GLU 458 LEU 459 THR 460 ILE 461 ASN 462 SER 463 GLY 464 PHE 465 ASP 466 LYS 467 ASN 468 LYS 469 GLN 470 ILE 471 GLY 472 PRO 473 LYS 474 THR 475 GLN 476 ASN 477 PHE 478 GLU 479 GLU 480 MET 481 LYS 482 SER 483 PHE 484 ASP 485 GLU 486 PHE 487 MET 488 LYS 489 ALA 490 TYR 491 LYS 492 ALA 493 GLN 494 MET 495 GLU 496 TYR 497 PHE 498 VAL 499 LYS 500 HIS 501 MET 502 CYS 503 CYS 504 ALA 505 ASP 506 ASN 507 CYS 508 ILE 509 ASP 510 ILE 511 ALA 512 HIS 513 ALA 514 GLU 515 ARG 516 ALA 517 PRO 518 LEU 519 PRO 520 PHE 521 LEU 522 SER 523 SER 524 MET 525 VAL 526 ASP 527 ASN 528 CYS 529 ILE 530 GLY 531 LYS 532 GLY 533 LYS 534 SER 535 LEU 536 GLN 537 ASP 538 GLY 539 GLY 540 ALA 541 GLU 542 TYR 543 ASN 544 PHE 545 SER 546 GLY 547 PRO 548 GLN 549 GLY 550 VAL 551 GLY 552 VAL 553 ALA 554 ASN 555 ILE 556 GLY 557 ASP 558 SER 559 LEU 560 VAL 561 ALA 562 VAL 563 LYS 564 LYS 565 ILE 566 VAL 567 PHE 568 ASP 569 GLU 570 ASN 571 LYS 572 ILE 573 THR 574 PRO 575 SER 576 GLU 577 LEU 578 LYS 579 LYS 580 THR 581 LEU 582 ASN 583 ASN 584 ASP 585 PHE 586 LYS 587 ASN 588 SER 589 GLU 590 GLU 591 ILE 592 GLN 593 ALA 594 LEU 595 LEU 596 LYS 597 ASN 598 ALA 599 PRO 600 LYS 601 PHE 602 GLY 603 ASN 604 ASP 605 ILE 606 ASP 607 GLU 608 VAL 609 ASP 610 ASN 611 LEU 612 ALA 613 ARG 614 GLU 615 GLY 616 ALA 617 LEU 618 VAL 619 TYR 620 CYS 621 ARG 622 GLU 623 VAL 624 ASN 625 LYS 626 TYR 627 THR 628 ASN 629 PRO 630 ARG 631 GLY 632 GLY 633 ASN 634 PHE 635 GLN 636 PRO 637 GLY 638 LEU 639 TYR 640 PRO 641 SER 642 SER 643 ILE 644 ASN 645 VAL 646 TYR 647 PHE 648 GLY 649 SER 650 LEU 651 THR 652 GLY 653 ALA 654 THR 655 PRO 656 ASP 657 GLY 658 ARG 659 LYS 660 SER 661 GLY 662 GLN 663 PRO 664 LEU 665 ALA 666 ASP 667 GLY 668 VAL 669 SER 670 PRO 671 SER 672 ARG 673 GLY 674 CYS 675 ASP 676 VAL 677 SER 678 GLY 679 PRO 680 THR 681 ALA 682 ALA 683 CYS 684 ASN 685 SER 686 VAL 687 SER 688 LYS 689 LEU 690 ASP 691 HIS 692 PHE 693 ILE 694 ALA 695 SER 696 ASN 697 GLY 698 THR 699 LEU 700 PHE 701 ASN 702 GLN 703 LYS 704 PHE 705 HIS 706 PRO 707 SER 708 ALA 709 LEU 710 LYS 711 GLY 712 ASP 713 ASN 714 GLY 715 LEU 716 MET 717 ASN 718 LEU 719 SER 720 SER 721 LEU 722 ILE 723 ARG 724 SER 725 TYR 726 PHE 727 ASP 728 GLN 729 LYS 730 GLY 731 PHE 732 HIS 733 VAL 734 GLN 735 PHE 736 ASN 737 VAL 738 ILE 739 ASP 740 LYS 741 LYS 742 ILE 743 LEU 744 LEU 745 ALA 746 ALA 747 GLN 748 LYS 749 ASN 750 PRO 751 GLU 752 LYS 753 TYR 754 GLN 755 ASP 756 LEU 757 ILE 758 VAL 759 ARG 760 VAL 761 ALA 762 GLY 763 TYR 764 SER 765 ALA 766 GLN 767 PHE 768 ILE 769 SER 770 LEU 771 ASP 772 LYS 773 SER 774 ILE 775 GLN 776 ASN 777 ASP 778 ILE 779 ILE 780 ALA 781 ARG 782 THR 783 GLU 784 HIS 785 VAL 786 MET 787