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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF THE ARGONAUTE2 PAZ DOMAIN (AS A MBP
Keywords DEVIANT OB FOLD, RNAI, GENE REGULATION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1R6Z     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CHIMERA OF MALTOSE-BINDING PERIPLASMIC PROTEIN AN ARGONAUTE 2  P 498 3901 0
2  Protein   CHIMERA OF MALTOSE-BINDING PERIPLASMIC PROTEIN AN ARGONAUTE 2  A 497 3892 0
3  Protein   CHIMERA OF MALTOSE-BINDING PERIPLASMIC PROTEIN AN ARGONAUTE 2  Z 499 3906 0
4  Ligand    B 2 0 23
5  Ligand    C 2 0 23
6  Ligand    D 2 0 23
7  Ligand   CHIMERA OF MALTOSE-BINDING PERIPLASMIC PROTEIN AN ARGONAUTE 2  P 3 0 3
8  Ligand   CHIMERA OF MALTOSE-BINDING PERIPLASMIC PROTEIN AN ARGONAUTE 2  A 3 0 3
9  Ligand   CHIMERA OF MALTOSE-BINDING PERIPLASMIC PROTEIN AN ARGONAUTE 2  Z 3 0 3
10 Water     57 0 57
total       1566 11699 135
Proteins
Unit 1 ILE1 GLU2 GLU3 GLY4 LYS5 LEU6 VAL7 ILE8 TRP9 ILE10 ASN11 GLY12 ASP13 LYS14 GLY15 TYR16 ASN17 GLY18 LEU19 ALA20 GLU21 VAL22 GLY23 LYS24 LYS25 PHE26 GLU27 LYS28 ASP29 THR30 GLY31 ILE32 LYS33 VAL34 THR35 VAL36 GLU37 HIS38 PRO39 ASP40 LYS41 LEU42 GLU43 GLU44 LYS45 PHE46 PRO47 GLN48 VAL49 ALA50 ALA51 THR52 GLY53 ASP54 GLY55 PRO56 ASP57 ILE58 ILE59 PHE60 TRP61 ALA62 HIS63 ASP64 ARG65 PHE66 GLY67 GLY68 TYR69 ALA70 GLN71 SER72 GLY73 LEU74 LEU75 ALA76 GLU77 ILE78 THR79 PRO80 ASP81 LYS82 ALA83 PHE84 GLN85 ASP86 LYS87 LEU88 TYR89 PRO90 PHE91 THR92 TRP93 ASP94 ALA95 VAL96 ARG97 TYR98 ASN99 GLY100 LYS101 LEU102 ILE103 ALA104 TYR105 PRO106 ILE107 ALA108 VAL109 GLU110 ALA111 LEU112 SER113 LEU114 ILE115 TYR116 ASN117 LYS118 ASP119 LEU120 LEU121 PRO122 ASN123 PRO124 PRO125 LYS126 THR127 TRP128 GLU129 GLU130 ILE131 PRO132 ALA133 LEU134 ASP135 LYS136 GLU137 LEU138 LYS139 ALA140 LYS141 GLY142 LYS143 SER144 ALA145 LEU146 MET147 PHE148 ASN149 LEU150 GLN151 GLU152 PRO153 TYR154 PHE155 THR156 TRP157 PRO158 LEU159 ILE160 ALA161 ALA162 ASP163 GLY164 GLY165 TYR166 ALA167 PHE168 LYS169 TYR170 GLU171 ASN172 GLY173 LYS174 TYR175 ASP176 ILE177 LYS178 ASP179 VAL180 GLY181 VAL182 ASP183 ASN184 ALA185 GLY186 ALA187 LYS188 ALA189 GLY190 LEU191 THR192 PHE193 LEU194 VAL195 ASP196 LEU197 ILE198 LYS199 ASN200 LYS201 HIS202 MET203 ASN204 ALA205 ASP206 THR207 ASP208 TYR209 SER210 ILE211 ALA212 GLU213 ALA214 ALA215 PHE216 ASN217 LYS218 GLY219 GLU220 THR221 ALA222 MET223 THR224 ILE225 ASN226 GLY227 PRO228 TRP229 ALA230 TRP231 SER232 ASN233 ILE234 ASP235 THR236 SER237 LYS238 VAL239 ASN240 TYR241 GLY242 VAL243 THR244 VAL245 LEU246 PRO247 THR248 PHE249 LYS250 GLY251 GLN252 PRO253 SER254 LYS255 PRO256 PHE257 VAL258 GLY259 VAL260 LEU261 SER262 ALA263 GLY264 ILE265 ASN266 ALA267 ALA268 SER269 PRO270 ASN271 LYS272 GLU273 LEU274 ALA275 LYS276 GLU277 PHE278 LEU279 GLU280 ASN281 TYR282 LEU283 LEU284 THR285 ASP286 GLU287 GLY288 LEU289 GLU290 ALA291 VAL292 ASN293 LYS294 ASP295 LYS296 PRO297 LEU298 GLY299 ALA300 VAL301 ALA302 LEU303 LYS304 SER305 TYR306 GLU307 GLU308 GLU309 LEU310 ALA311 LYS312 ASP313 PRO314 ARG315 ILE316 ALA317 ALA318 THR319 MET320 GLU321 ASN322 ALA323 GLN324 LYS325 GLY326 GLU327 ILE328 MET329 PRO330 ASN331 ILE332 PRO333 GLN334 MET335 SER336 ALA337 PHE338 TRP339 TYR340 ALA341 VAL342 ARG343 THR344 ALA345 VAL346 ILE347 ASN348 ALA349 ALA350 SER351 GLY352 ARG353 GLN354 THR355 VAL356 ASP357 GLU358 ALA359 LEU360 LYS361 ASP362 ALA363 GLN364 THR365 ASN366 ALA367 ALA368 ALA369 GLU370 PHE371 VAL591 ASP592 ILE593 SER594 HIS595 LYS596 SER597 PHE598 PRO599 ILE600 SER601 MET602 PRO603 MET604 ILE605 GLU606 TYR607 LEU608 GLU609 ARG610 PHE611 SER612 LEU613 LYS614 ALA615 LYS616 ILE617 ASN618 ASN619 THR620 THR621 ASN622 LEU623 ASP624 TYR625 SER626 ARG627 ARG628 PHE629 LEU630 GLU631 PRO632 PHE633 LEU634 ARG635 GLY636 ILE637 ASN638 VAL639 VAL640 TYR641 THR642 PRO643 PRO644 GLN645 SER646 PHE647 GLN648 SER649 ALA650 PRO651 ARG652 VAL653 TYR654 ARG655 VAL656 ASN657 GLY658 LEU659 SER660 ARG661 ALA662 PRO663 ALA664 SER665 SER666 GLU667 THR668 PHE669 GLU670 HIS671 ASP672 GLY673 LYS674 LYS675 VAL676 THR677 ILE678 ALA679 SER680 TYR681 PHE682 HIS683 SER684 ARG685 ASN686 TYR687 PRO688 LEU689 LYS690 PHE691 PRO692 GLN693 LEU694 HIS695 CYS696 LEU697 ASN698 VAL699 GLY700 SER701 SER702 ILE703 LYS704 SER705 ILE706 LEU707 LEU708 PRO709 ILE710 GLU711 LEU712 CYS713 SER714 ILE715 GLU716 GLU717
Unit 2 ILE1 GLU2 GLU3 GLY4 LYS5 LEU6 VAL7 ILE8 TRP9 ILE10 ASN11 GLY12 ASP13 LYS14 GLY15 TYR16 ASN17 GLY18 LEU19 ALA20 GLU21 VAL22 GLY23 LYS24 LYS25 PHE26 GLU27 LYS28 ASP29 THR30 GLY31 ILE32 LYS33 VAL34 THR35 VAL36 GLU37 HIS38 PRO39 ASP40 LYS41 LEU42 GLU43 GLU44 LYS45 PHE46 PRO47 GLN48 VAL49 ALA50 ALA51 THR52 GLY53 ASP54 GLY55 PRO56 ASP57 ILE58 ILE59 PHE60 TRP61 ALA62 HIS63 ASP64 ARG65 PHE66 GLY67 GLY68 TYR69 ALA70 GLN71 SER72 GLY73 LEU74 LEU75 ALA76 GLU77 ILE78 THR79 PRO80 ASP81 LYS82 ALA83 PHE84 GLN85 ASP86 LYS87 LEU88 TYR89 PRO90 PHE91 THR92 TRP93 ASP94 ALA95 VAL96 ARG97 TYR98 ASN99 GLY100 LYS101 LEU102 ILE103 ALA104 TYR105 PRO106 ILE107 ALA108 VAL109 GLU110 ALA111 LEU112 SER113 LEU114 ILE115 TYR116 ASN117 LYS118 ASP119 LEU120 LEU121 PRO122 ASN123 PRO124 PRO125 LYS126 THR127 TRP128 GLU129 GLU130 ILE131 PRO132 ALA133 LEU134 ASP135 LYS136 GLU137 LEU138 LYS139 ALA140 LYS141 GLY142 LYS143 SER144 ALA145 LEU146 MET147 PHE148 ASN149 LEU150 GLN151 GLU152 PRO153 TYR154 PHE155 THR156 TRP157 PRO158 LEU159 ILE160 ALA161 ALA162 ASP163 GLY164 GLY165 TYR166 ALA167 PHE168 LYS169 TYR170 GLU171 ASN172 GLY173 LYS174 TYR175 ASP176 ILE177 LYS178 ASP179 VAL180 GLY181 VAL182 ASP183 ASN184 ALA185 GLY186 ALA187 LYS188 ALA189 GLY190 LEU191 THR192 PHE193 LEU194 VAL195 ASP196 LEU197 ILE198 LYS199 ASN200 LYS201 HIS202 MET203 ASN204 ALA205 ASP206 THR207 ASP208 TYR209 SER210 ILE211 ALA212 GLU213 ALA214 ALA215 PHE216 ASN217 LYS218 GLY219 GLU220 THR221 ALA222 MET223 THR224 ILE225 ASN226 GLY227 PRO228 TRP229 ALA230 TRP231 SER232 ASN233 ILE234 ASP235 THR236 SER237 LYS238 VAL239 ASN240 TYR241 GLY242 VAL243 THR244 VAL245 LEU246 PRO247 THR248 PHE249 LYS250 GLY251 GLN252 PRO253 SER254 LYS255 PRO256 PHE257 VAL258 GLY259 VAL260 LEU261 SER262 ALA263 GLY264 ILE265 ASN266 ALA267 ALA268 SER269 PRO270 ASN271 LYS272 GLU273 LEU274 ALA275 LYS276 GLU277 PHE278 LEU279 GLU280 ASN281 TYR282 LEU283 LEU284 THR285 ASP286 GLU287 GLY288 LEU289 GLU290 ALA291 VAL292 ASN293 LYS294 ASP295 LYS296 PRO297 LEU298 GLY299 ALA300 VAL301 ALA302 LEU303 LYS304 SER305 TYR306 GLU307 GLU308 GLU309 LEU310 ALA311 LYS312 ASP313 PRO314 ARG315 ILE316 ALA317 ALA318 THR319 MET320 GLU321 ASN322 ALA323 GLN324 LYS325 GLY326 GLU327 ILE328 MET329 PRO330 ASN331 ILE332 PRO333 GLN334 MET335 SER336 ALA337 PHE338 TRP339 TYR340 ALA341 VAL342 ARG343 THR344 ALA345 VAL346 ILE347 ASN348 ALA349 ALA350 SER351 GLY352 ARG353 GLN354 THR355 VAL356 ASP357 GLU358 ALA359 LEU360 LYS361 ASP362 ALA363 GLN364 THR365 ASN366 ALA367 ALA368 ALA369 GLU370 PHE371 VAL591 ASP592 ILE593 SER594 HIS595 LYS596 SER597 PHE598 PRO599 ILE600 SER601 MET602 PRO603 MET604 ILE605 GLU606 TYR607 LEU608 GLU609 ARG610 PHE611 SER612 LEU613 LYS614 ALA615 LYS616 ILE617 ASN618 ASN619 THR620 THR621 ASN622 LEU623 ASP624 TYR625 SER626 ARG627 ARG628 PHE629 LEU630 GLU631 PRO632 PHE633 LEU634 ARG635 GLY636 ILE637 ASN638 VAL639 VAL640 TYR641 THR642 PRO643 PRO644 GLN645 SER646 PHE647 GLN648 SER649 ALA650 PRO651 ARG652 VAL653 TYR654 ARG655 VAL656 ASN657 GLY658 LEU659 SER660 ARG661 ALA662 PRO663 ALA664 SER665 SER666 GLU667 THR668 PHE669 GLU670 HIS671 ASP672 GLY673 LYS674 LYS675 VAL676 THR677 ILE678 ALA679 SER680 TYR681 PHE682 HIS683 SER684 ARG685 ASN686 TYR687 PRO688 LEU689 LYS690 PHE691 PRO692 GLN693 LEU694 HIS695 CYS696 LEU697 ASN698 VAL699 GLY700 SER701 SER702 ILE703 LYS704 SER705 ILE706 LEU707 LEU708 PRO709 ILE710 GLU711 LEU712 CYS713 SER714 ILE715 GLU716
Unit 3 GLU2 GLU3 GLY4 LYS5 LEU6 VAL7 ILE8 TRP9 ILE10 ASN11 GLY12 ASP13 LYS14 GLY15 TYR16 ASN17 GLY18 LEU19 ALA20 GLU21 VAL22 GLY23 LYS24 LYS25 PHE26 GLU27 LYS28 ASP29 THR30 GLY31 ILE32 LYS33 VAL34 THR35 VAL36 GLU37 HIS38 PRO39 ASP40 LYS41 LEU42 GLU43 GLU44 LYS45 PHE46 PRO47 GLN48 VAL49 ALA50 ALA51 THR52 GLY53 ASP54 GLY55 PRO56 ASP57 ILE58 ILE59 PHE60 TRP61 ALA62 HIS63 ASP64 ARG65 PHE66 GLY67 GLY68 TYR69 ALA70 GLN71 SER72 GLY73 LEU74 LEU75 ALA76 GLU77 ILE78 THR79 PRO80 ASP81 LYS82 ALA83 PHE84 GLN85 ASP86 LYS87 LEU88 TYR89 PRO90 PHE91 THR92 TRP93 ASP94 ALA95 VAL96 ARG97 TYR98 ASN99 GLY100 LYS101 LEU102 ILE103 ALA104 TYR105 PRO106 ILE107 ALA108 VAL109 GLU110 ALA111 LEU112 SER113 LEU114 ILE115 TYR116 ASN117 LYS118 ASP119 LEU120 LEU121 PRO122 ASN123 PRO124 PRO125 LYS126 THR127 TRP128 GLU129 GLU130 ILE131 PRO132 ALA133 LEU134 ASP135 LYS136 GLU137 LEU138 LYS139 ALA140 LYS141 GLY142 LYS143 SER144 ALA145 LEU146 MET147 PHE148 ASN149 LEU150 GLN151 GLU152 PRO153 TYR154 PHE155 THR156 TRP157 PRO158 LEU159 ILE160 ALA161 ALA162 ASP163 GLY164 GLY165 TYR166 ALA167 PHE168 LYS169 TYR170 GLU171 ASN172 GLY173 LYS174 TYR175 ASP176 ILE177 LYS178 ASP179 VAL180 GLY181 VAL182 ASP183 ASN184 ALA185 GLY186 ALA187 LYS188 ALA189 GLY190 LEU191 THR192 PHE193 LEU194 VAL195 ASP196 LEU197 ILE198 LYS199 ASN200 LYS201 HIS202 MET203 ASN204 ALA205 ASP206 THR207 ASP208 TYR209 SER210 ILE211 ALA212 GLU213 ALA214 ALA215 PHE216 ASN217 LYS218 GLY219 GLU220 THR221 ALA222 MET223 THR224 ILE225 ASN226 GLY227 PRO228 TRP229 ALA230 TRP231 SER232 ASN233 ILE234 ASP235 THR236 SER237 LYS238 VAL239 ASN240 TYR241 GLY242 VAL243 THR244 VAL245 LEU246 PRO247 THR248 PHE249 LYS250 GLY251 GLN252 PRO253 SER254 LYS255 PRO256 PHE257 VAL258 GLY259 VAL260 LEU261 SER262 ALA263 GLY264 ILE265 ASN266 ALA267 ALA268 SER269 PRO270 ASN271 LYS272 GLU273 LEU274 ALA275 LYS276 GLU277 PHE278 LEU279 GLU280 ASN281 TYR282 LEU283 LEU284 THR285 ASP286 GLU287 GLY288 LEU289 GLU290 ALA291 VAL292 ASN293 LYS294 ASP295 LYS296 PRO297 LEU298 GLY299 ALA300 VAL301 ALA302 LEU303 LYS304 SER305 TYR306 GLU307 GLU308 GLU309 LEU310 ALA311 LYS312 ASP313 PRO314 ARG315 ILE316 ALA317 ALA318 THR319 MET320 GLU321 ASN322 ALA323 GLN324 LYS325 GLY326 GLU327 ILE328 MET329 PRO330 ASN331 ILE332 PRO333 GLN334 MET335 SER336 ALA337 PHE338 TRP339 TYR340 ALA341 VAL342 ARG343 THR344 ALA345 VAL346 ILE347 ASN348 ALA349 ALA350 SER351 GLY352 ARG353 GLN354 THR355 VAL356 ASP357 GLU358 ALA359 LEU360 LYS361 ASP362 ALA363 GLN364 THR365 ASN366 ALA367 ALA368 ALA369 GLU370 PHE371 VAL591 ASP592 ILE593 SER594 HIS595 LYS596 SER597 PHE598 PRO599 ILE600 SER601 MET602 PRO603 MET604 ILE605 GLU606 TYR607 LEU608 GLU609 ARG610 PHE611 SER612 LEU613 LYS614 ALA615 LYS616 ILE617 ASN618 ASN619 THR620 THR621 ASN622 LEU623 ASP624 TYR625 SER626 ARG627 ARG628 PHE629 LEU630 GLU631 PRO632 PHE633 LEU634 ARG635 GLY636 ILE637 ASN638 VAL639 VAL640 TYR641 THR642 PRO643 PRO644 GLN645 SER646 PHE647 GLN648 SER649 ALA650 PRO651 ARG652 VAL653 TYR654 ARG655 VAL656 ASN657 GLY658 LEU659 SER660 ARG661 ALA662 PRO663 ALA664 SER665 SER666 GLU667 THR668 PHE669 GLU670 HIS671 ASP672 GLY673 LYS674 LYS675 VAL676 THR677 ILE678 ALA679 SER680 TYR681 PHE682 HIS683 SER684 ARG685 ASN686 TYR687 PRO688 LEU689 LYS690 PHE691 PRO692 GLN693 LEU694 HIS695 CYS696 LEU697 ASN698 VAL699 GLY700 SER701 SER702 ILE703 LYS704 SER705 ILE706 LEU707 LEU708 PRO709 ILE710 GLU711 LEU712 CYS713 SER714 ILE715 GLU716 GLU717 GLY718 GLN719
Ligands
Unit 4 GLC1 GLC2
Unit 5 GLC1 GLC2
Unit 6 GLC1 GLC2
Unit 7 NI728 NI729 NI730
Unit 8 NI728 NI729 NI730
Unit 9 NI728 NI729 NI730
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany