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Sequence, Chains, Asymmetric and Biological Units

Title COORDINATES OF S12, SH44, LH69 AND SRL SEPARATELY FITTED INT CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND RIBOSOME
Keywords RIBOSOMAL PROTEIN, RRNA, RNA BINDING PROTEIN-RNA COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    A 44 44 0
2  DNA    B 20 20 0
3  DNA    C 27 27 0
4  Protein   30S RIBOSOMAL PROTEIN S12  L 124 124 0
total       215 215 0

Proteins
Unit 4 PRO1 THR2 ILE3 ASN4 GLN5 LEU6 VAL7 ARG8 LYS9 GLY10 ARG11 GLU12 LYS13 VAL14 ARG15 LYS16 LYS17 SER18 LYS19 VAL20 PRO21 ALA22 LEU23 LYS24 GLY25 ALA26 PRO27 PHE28 ARG29 ARG30 GLY31 VAL32 CYS33 THR34 VAL35 VAL36 ARG37 THR38 VAL39 THR40 PRO41 LYS42 LYS43 PRO44 ASN45 SER46 ALA47 LEU48 ARG49 LYS50 VAL51 ALA52 LYS53 VAL54 ARG55 LEU56 THR57 SER58 GLY59 TYR60 GLU61 VAL62 THR63 ALA64 TYR65 ILE66 PRO67 GLY68 GLU69 GLY70 HIS71 ASN72 LEU73 GLN74 GLU75 HIS76 SER77 VAL78 VAL79 LEU80 ILE81 ARG82 GLY83 GLY84 ARG85 VAL86 LYS87 ASP88 LEU89 PRO90 GLY91 VAL92 ARG93 TYR94 HIS95 ILE96 VAL97 ARG98 GLY99 VAL100 TYR101 ASP102 ALA103 ALA104 GLY105 VAL106 LYS107 ASP108 ARG109 LYS110 LYS111 SER112 ARG113 SER114 LYS115 TYR116 GLY117 THR118 LYS119 LYS120 PRO121 LYS122 GLU123 ALA124

Nucleic acids
Unit 1 C1 G2 C3 C4 C5 G6 U7 C8 A9 C10 G11 C12 C13 A14 U15 G16 G17 G18 A19 G20 C21 G22 U23 G24 A25 C26 U27 G28 G29 G30 G31 C32 G33 A34 A35 G36 U37 C38 G39 U40 A41 A42 C43 A44
Unit 2 G2 G3 C4 C5 G6 U7 A8 A9 C10 U11 A12 U13 A14 A15 C16 G17 G18 U19 C20 C21
Unit 3 G1 A2 C3 C4 G5 U6 A7 U8 A9 G10 U11 A12 C13 G14 A15 G16 A17 G18 G19 A20 A21 C22 U23 A24 C25 G26 G27

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany