1QY9 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF E. COLI SE-MET PROTEIN YDDE
• Keywords: PUTATIVE PHENAZINE BIOSYNTHESIS PROTEIN; EPIMERASE; ANTIBIOT BIOSYNTHESIS PROTEIN; STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1QY9	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HYPOTHETICAL PROTEIN YDDE	A	295	2220	40
2	Protein	HYPOTHETICAL PROTEIN YDDE	B	295	2220	40
3	Protein	HYPOTHETICAL PROTEIN YDDE	C	296	2229	40
4	Protein	HYPOTHETICAL PROTEIN YDDE	D	297	2229	45
5	Ligand	HYPOTHETICAL PROTEIN YDDE	A	2	0	12
6	Ligand	HYPOTHETICAL PROTEIN YDDE	B	1	0	1
7	Ligand	HYPOTHETICAL PROTEIN YDDE	D	1	0	6
8	Water			620	0	620
total				1807	8898	804

Proteins

Unit 1	PRO 3 GLN 4 VAL 5 TYR 6 HIS 7 VAL 8 ASP 9 ALA 10 PHE 11 THR 12 SER 13 GLN 14 PRO 15 PHE 16 ARG 17 GLY 18 ASN 19 SER 20 ALA 21 GLY 22 VAL 23 VAL 24 PHE 25 PRO 26 ALA 27 ASP 28 ASN 29 LEU 30 SER 31 GLU 32 ALA 33 GLN 34 MSE 35 GLN 36 LEU 37 ILE 38 ALA 39 ARG 40 GLU 41 LEU 42 GLY 43 HIS 44 SER 45 GLU 46 THR 47 ALA 48 PHE 49 LEU 50 LEU 51 HIS 52 SER 53 ASP 54 ASP 55 SER 56 ASP 57 VAL 58 ARG 59 ILE 60 ARG 61 TYR 62 PHE 63 THR 64 PRO 65 THR 66 VAL 67 GLU 68 VAL 69 PRO 70 ILE 71 CYS 72 GLY 73 HIS 74 ALA 75 THR 76 VAL 77 ALA 78 ALA 79 HIS 80 TYR 81 VAL 82 ARG 83 ALA 84 LYS 85 VAL 86 LEU 87 GLY 88 LEU 89 GLY 90 ASN 91 CYS 92 THR 93 ILE 94 TRP 95 GLN 96 THR 97 SER 98 LEU 99 ALA 100 GLY 101 LYS 102 HIS 103 ARG 104 VAL 105 THR 106 ILE 107 GLU 108 LYS 109 HIS 110 ASN 111 ASP 112 ASP 113 TYR 114 ARG 115 ILE 116 SER 117 LEU 118 GLU 119 GLN 120 GLY 121 THR 122 PRO 123 GLY 124 PHE 125 GLU 126 PRO 127 PRO 128 LEU 129 GLU 130 GLY 131 GLU 132 THR 133 ARG 134 ALA 135 ALA 136 ILE 137 ILE 138 ASN 139 ALA 140 LEU 141 HIS 142 LEU 143 THR 144 GLU 145 ASP 146 ASP 147 ILE 148 LEU 149 PRO 150 GLY 151 LEU 152 PRO 153 ILE 154 GLN 155 VAL 156 ALA 157 THR 158 THR 159 GLY 160 HIS 161 SER 162 LYS 163 VAL 164 MSE 165 ILE 166 PRO 167 LEU 168 LYS 169 PRO 170 GLU 171 VAL 172 ASP 173 ILE 174 ASP 175 ALA 176 LEU 177 SER 178 PRO 179 ASP 180 LEU 181 ASN 182 ALA 183 LEU 184 THR 185 ALA 186 ILE 187 SER 188 LYS 189 LYS 190 ILE 191 GLY 192 CYS 193 ASN 194 GLY 195 PHE 196 PHE 197 PRO 198 PHE 199 GLN 200 ILE 201 ARG 202 PRO 203 GLY 204 LYS 205 ASN 206 GLU 207 THR 208 ASP 209 GLY 210 ARG 211 MSE 212 PHE 213 SER 214 PRO 215 ALA 216 ILE 217 GLY 218 ILE 219 VAL 220 GLU 221 ASP 222 PRO 223 VAL 224 THR 225 GLY 226 ASN 227 ALA 228 ASN 229 GLY 230 PRO 231 MSE 232 GLY 233 ALA 234 TRP 235 LEU 236 VAL 237 HIS 238 HIS 239 ASN 240 VAL 241 LEU 242 PRO 243 HIS 244 ASP 245 GLY 246 ASN 247 VAL 248 LEU 249 ARG 250 VAL 251 LYS 252 GLY 253 HIS 254 GLN 255 GLY 256 ARG 257 ALA 258 LEU 259 GLY 260 ARG 261 ASP 262 GLY 263 MSE 264 ILE 265 GLU 266 VAL 267 THR 268 VAL 269 THR 270 ILE 271 ARG 272 ASP 273 ASN 274 GLN 275 PRO 276 GLU 277 LYS 278 VAL 279 THR 280 ILE 281 SER 282 GLY 283 THR 284 ALA 285 VAL 286 ILE 287 LEU 288 PHE 289 HIS 290 ALA 291 GLU 292 TRP 293 ALA 294 ILE 295 GLU 296 LEU 297
Unit 2	PRO 3 GLN 4 VAL 5 TYR 6 HIS 7 VAL 8 ASP 9 ALA 10 PHE 11 THR 12 SER 13 GLN 14 PRO 15 PHE 16 ARG 17 GLY 18 ASN 19 SER 20 ALA 21 GLY 22 VAL 23 VAL 24 PHE 25 PRO 26 ALA 27 ASP 28 ASN 29 LEU 30 SER 31 GLU 32 ALA 33 GLN 34 MSE 35 GLN 36 LEU 37 ILE 38 ALA 39 ARG 40 GLU 41 LEU 42 GLY 43 HIS 44 SER 45 GLU 46 THR 47 ALA 48 PHE 49 LEU 50 LEU 51 HIS 52 SER 53 ASP 54 ASP 55 SER 56 ASP 57 VAL 58 ARG 59 ILE 60 ARG 61 TYR 62 PHE 63 THR 64 PRO 65 THR 66 VAL 67 GLU 68 VAL 69 PRO 70 ILE 71 CYS 72 GLY 73 HIS 74 ALA 75 THR 76 VAL 77 ALA 78 ALA 79 HIS 80 TYR 81 VAL 82 ARG 83 ALA 84 LYS 85 VAL 86 LEU 87 GLY 88 LEU 89 GLY 90 ASN 91 CYS 92 THR 93 ILE 94 TRP 95 GLN 96 THR 97 SER 98 LEU 99 ALA 100 GLY 101 LYS 102 HIS 103 ARG 104 VAL 105 THR 106 ILE 107 GLU 108 LYS 109 HIS 110 ASN 111 ASP 112 ASP 113 TYR 114 ARG 115 ILE 116 SER 117 LEU 118 GLU 119 GLN 120 GLY 121 THR 122 PRO 123 GLY 124 PHE 125 GLU 126 PRO 127 PRO 128 LEU 129 GLU 130 GLY 131 GLU 132 THR 133 ARG 134 ALA 135 ALA 136 ILE 137 ILE 138 ASN 139 ALA 140 LEU 141 HIS 142 LEU 143 THR 144 GLU 145 ASP 146 ASP 147 ILE 148 LEU 149 PRO 150 GLY 151 LEU 152 PRO 153 ILE 154 GLN 155 VAL 156 ALA 157 THR 158 THR 159 GLY 160 HIS 161 SER 162 LYS 163 VAL 164 MSE 165 ILE 166 PRO 167 LEU 168 LYS 169 PRO 170 GLU 171 VAL 172 ASP 173 ILE 174 ASP 175 ALA 176 LEU 177 SER 178 PRO 179 ASP 180 LEU 181 ASN 182 ALA 183 LEU 184 THR 185 ALA 186 ILE 187 SER 188 LYS 189 LYS 190 ILE 191 GLY 192 CYS 193 ASN 194 GLY 195 PHE 196 PHE 197 PRO 198 PHE 199 GLN 200 ILE 201 ARG 202 PRO 203 GLY 204 LYS 205 ASN 206 GLU 207 THR 208 ASP 209 GLY 210 ARG 211 MSE 212 PHE 213 SER 214 PRO 215 ALA 216 ILE 217 GLY 218 ILE 219 VAL 220 GLU 221 ASP 222 PRO 223 VAL 224 THR 225 GLY 226 ASN 227 ALA 228 ASN 229 GLY 230 PRO 231 MSE 232 GLY 233 ALA 234 TRP 235 LEU 236 VAL 237 HIS 238 HIS 239 ASN 240 VAL 241 LEU 242 PRO 243 HIS 244 ASP 245 GLY 246 ASN 247 VAL 248 LEU 249 ARG 250 VAL 251 LYS 252 GLY 253 HIS 254 GLN 255 GLY 256 ARG 257 ALA 258 LEU 259 GLY 260 ARG 261 ASP 262 GLY 263 MSE 264 ILE 265 GLU 266 VAL 267 THR 268 VAL 269 THR 270 ILE 271 ARG 272 ASP 273 ASN 274 GLN 275 PRO 276 GLU 277 LYS 278 VAL 279 THR 280 ILE 281 SER 282 GLY 283 THR 284 ALA 285 VAL 286 ILE 287 LEU 288 PHE 289 HIS 290 ALA 291 GLU 292 TRP 293 ALA 294 ILE 295 GLU 296 LEU 297
Unit 3	LYS 2 PRO 3 GLN 4 VAL 5 TYR 6 HIS 7 VAL 8 ASP 9 ALA 10 PHE 11 THR 12 SER 13 GLN 14 PRO 15 PHE 16 ARG 17 GLY 18 ASN 19 SER 20 ALA 21 GLY 22 VAL 23 VAL 24 PHE 25 PRO 26 ALA 27 ASP 28 ASN 29 LEU 30 SER 31 GLU 32 ALA 33 GLN 34 MSE 35 GLN 36 LEU 37 ILE 38 ALA 39 ARG 40 GLU 41 LEU 42 GLY 43 HIS 44 SER 45 GLU 46 THR 47 ALA 48 PHE 49 LEU 50 LEU 51 HIS 52 SER 53 ASP 54 ASP 55 SER 56 ASP 57 VAL 58 ARG 59 ILE 60 ARG 61 TYR 62 PHE 63 THR 64 PRO 65 THR 66 VAL 67 GLU 68 VAL 69 PRO 70 ILE 71 CYS 72 GLY 73 HIS 74 ALA 75 THR 76 VAL 77 ALA 78 ALA 79 HIS 80 TYR 81 VAL 82 ARG 83 ALA 84 LYS 85 VAL 86 LEU 87 GLY 88 LEU 89 GLY 90 ASN 91 CYS 92 THR 93 ILE 94 TRP 95 GLN 96 THR 97 SER 98 LEU 99 ALA 100 GLY 101 LYS 102 HIS 103 ARG 104 VAL 105 THR 106 ILE 107 GLU 108 LYS 109 HIS 110 ASN 111 ASP 112 ASP 113 TYR 114 ARG 115 ILE 116 SER 117 LEU 118 GLU 119 GLN 120 GLY 121 THR 122 PRO 123 GLY 124 PHE 125 GLU 126 PRO 127 PRO 128 LEU 129 GLU 130 GLY 131 GLU 132 THR 133 ARG 134 ALA 135 ALA 136 ILE 137 ILE 138 ASN 139 ALA 140 LEU 141 HIS 142 LEU 143 THR 144 GLU 145 ASP 146 ASP 147 ILE 148 LEU 149 PRO 150 GLY 151 LEU 152 PRO 153 ILE 154 GLN 155 VAL 156 ALA 157 THR 158 THR 159 GLY 160 HIS 161 SER 162 LYS 163 VAL 164 MSE 165 ILE 166 PRO 167 LEU 168 LYS 169 PRO 170 GLU 171 VAL 172 ASP 173 ILE 174 ASP 175 ALA 176 LEU 177 SER 178 PRO 179 ASP 180 LEU 181 ASN 182 ALA 183 LEU 184 THR 185 ALA 186 ILE 187 SER 188 LYS 189 LYS 190 ILE 191 GLY 192 CYS 193 ASN 194 GLY 195 PHE 196 PHE 197 PRO 198 PHE 199 GLN 200 ILE 201 ARG 202 PRO 203 GLY 204 LYS 205 ASN 206 GLU 207 THR 208 ASP 209 GLY 210 ARG 211 MSE 212 PHE 213 SER 214 PRO 215 ALA 216 ILE 217 GLY 218 ILE 219 VAL 220 GLU 221 ASP 222 PRO 223 VAL 224 THR 225 GLY 226 ASN 227 ALA 228 ASN 229 GLY 230 PRO 231 MSE 232 GLY 233 ALA 234 TRP 235 LEU 236 VAL 237 HIS 238 HIS 239 ASN 240 VAL 241 LEU 242 PRO 243 HIS 244 ASP 245 GLY 246 ASN 247 VAL 248 LEU 249 ARG 250 VAL 251 LYS 252 GLY 253 HIS 254 GLN 255 GLY 256 ARG 257 ALA 258 LEU 259 GLY 260 ARG 261 ASP 262 GLY 263 MSE 264 ILE 265 GLU 266 VAL 267 THR 268 VAL 269 THR 270 ILE 271 ARG 272 ASP 273 ASN 274 GLN 275 PRO 276 GLU 277 LYS 278 VAL 279 THR 280 ILE 281 SER 282 GLY 283 THR 284 ALA 285 VAL 286 ILE 287 LEU 288 PHE 289 HIS 290 ALA 291 GLU 292 TRP 293 ALA 294 ILE 295 GLU 296 LEU 297
Unit 4	MSE 1 LYS 2 PRO 3 GLN 4 VAL 5 TYR 6 HIS 7 VAL 8 ASP 9 ALA 10 PHE 11 THR 12 SER 13 GLN 14 PRO 15 PHE 16 ARG 17 GLY 18 ASN 19 SER 20 ALA 21 GLY 22 VAL 23 VAL 24 PHE 25 PRO 26 ALA 27 ASP 28 ASN 29 LEU 30 SER 31 GLU 32 ALA 33 GLN 34 MSE 35 GLN 36 LEU 37 ILE 38 ALA 39 ARG 40 GLU 41 LEU 42 GLY 43 HIS 44 SER 45 GLU 46 THR 47 ALA 48 PHE 49 LEU 50 LEU 51 HIS 52 SER 53 ASP 54 ASP 55 SER 56 ASP 57 VAL 58 ARG 59 ILE 60 ARG 61 TYR 62 PHE 63 THR 64 PRO 65 THR 66 VAL 67 GLU 68 VAL 69 PRO 70 ILE 71 CYS 72 GLY 73 HIS 74 ALA 75 THR 76 VAL 77 ALA 78 ALA 79 HIS 80 TYR 81 VAL 82 ARG 83 ALA 84 LYS 85 VAL 86 LEU 87 GLY 88 LEU 89 GLY 90 ASN 91 CYS 92 THR 93 ILE 94 TRP 95 GLN 96 THR 97 SER 98 LEU 99 ALA 100 GLY 101 LYS 102 HIS 103 ARG 104 VAL 105 THR 106 ILE 107 GLU 108 LYS 109 HIS 110 ASN 111 ASP 112 ASP 113 TYR 114 ARG 115 ILE 116 SER 117 LEU 118 GLU 119 GLN 120 GLY 121 THR 122 PRO 123 GLY 124 PHE 125 GLU 126 PRO 127 PRO 128 LEU 129 GLU 130 GLY 131 GLU 132 THR 133 ARG 134 ALA 135 ALA 136 ILE 137 ILE 138 ASN 139 ALA 140 LEU 141 HIS 142 LEU 143 THR 144 GLU 145 ASP 146 ASP 147 ILE 148 LEU 149 PRO 150 GLY 151 LEU 152 PRO 153 ILE 154 GLN 155 VAL 156 ALA 157 THR 158 THR 159 GLY 160 HIS 161 SER 162 LYS 163 VAL 164 MSE 165 ILE 166 PRO 167 LEU 168 LYS 169 PRO 170 GLU 171 VAL 172 ASP 173 ILE 174 ASP 175 ALA 176 LEU 177 SER 178 PRO 179 ASP 180 LEU 181 ASN 182 ALA 183 LEU 184 THR 185 ALA 186 ILE 187 SER 188 LYS 189 LYS 190 ILE 191 GLY 192 CYS 193 ASN 194 GLY 195 PHE 196 PHE 197 PRO 198 PHE 199 GLN 200 ILE 201 ARG 202 PRO 203 GLY 204 LYS 205 ASN 206 GLU 207 THR 208 ASP 209 GLY 210 ARG 211 MSE 212 PHE 213 SER 214 PRO 215 ALA 216 ILE 217 GLY 218 ILE 219 VAL 220 GLU 221 ASP 222 PRO 223 VAL 224 THR 225 GLY 226 ASN 227 ALA 228 ASN 229 GLY 230 PRO 231 MSE 232 GLY 233 ALA 234 TRP 235 LEU 236 VAL 237 HIS 238 HIS 239 ASN 240 VAL 241 LEU 242 PRO 243 HIS 244 ASP 245 GLY 246 ASN 247 VAL 248 LEU 249 ARG 250 VAL 251 LYS 252 GLY 253 HIS 254 GLN 255 GLY 256 ARG 257 ALA 258 LEU 259 GLY 260 ARG 261 ASP 262 GLY 263 MSE 264 ILE 265 GLU 266 VAL 267 THR 268 VAL 269 THR 270 ILE 271 ARG 272 ASP 273 ASN 274 GLN 275 PRO 276 GLU 277 LYS 278 VAL 279 THR 280 ILE 281 SER 282 GLY 283 THR 284 ALA 285 VAL 286 ILE 287 LEU 288 PHE 289 HIS 290 ALA 291 GLU 292 TRP 293 ALA 294 ILE 295 GLU 296 LEU 297

Ligands

Unit 5	GOL 1000 GOL 3000
Unit 6	OH 9072
Unit 7	GOL 2000