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Sequence, Chains, Asymmetric and Biological Units

Title RNA LIGASE, CLASS I
Keywords RIBOZYME, LIGASE, MODELLING
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1QXI     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 125 2665 0
total       125 2665 0

Nucleic acids
Unit 1 G1 G2 A3 A4 C5 A6 C7 U8 A9 U10 A11 C12 G13 A14 C15 U16 G17 G18 U19 A20 C21 C22 G23 U24 A25 A26 A27 A28 G29 A30 C31 A32 A33 A34 U35 C36 U37 G38 C39 C40 C41 U42 C43 A44 G45 A46 G47 C48 U49 U50 G51 A52 G53 A54 A55 C56 A57 U58 C59 U60 U61 C62 G63 G64 A65 U66 G67 C68 A69 G70 G71 G72 G73 A74 G75 G76 C77 A78 G79 C80 C81 C82 C83 C84 G85 G86 U87 G88 G89 C90 U91 U92 U93 A94 A95 C96 G97 C98 C99 A100 A101 C102 G103 U104 U105 C106 U107 C108 A109 A110 C111 A112 A113 U114 A115 G116 U117 G118 A119 C200 C201 A202 G203 U204 C205

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany