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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF HELICOBACTER PYLORI CATALASE WITH FORMIC ACID B
Keywords BETA BARREL, AZIDE COMPLEX, FORMATE COMPLEX, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1QWM     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   KATA CATALASE  A 490 4020 0
2  Protein   KATA CATALASE  B 490 4020 0
3  Ligand   KATA CATALASE  A 23 0 109
4  Ligand   KATA CATALASE  B 16 0 88
5 Water     933 0 933
total       1952 8040 1130
Proteins
Unit 1 MET1 VAL2 ASN3 LYS4 ASP5 VAL6 LYS7 GLN8 THR9 THR10 ALA11 PHE12 GLY13 ALA14 PRO15 VAL16 TRP17 ASP18 ASP19 ASN20 ASN21 VAL22 ILE23 THR24 ALA25 GLY26 PRO27 ARG28 GLY29 PRO30 VAL31 LEU32 LEU33 GLN34 SER35 THR36 TRP37 PHE38 LEU39 GLU40 LYS41 LEU42 ALA43 ALA44 PHE45 ASP46 ARG47 GLU48 ARG49 ILE50 PRO51 GLU52 ARG53 VAL54 VAL55 HIS56 ALA57 LYS58 GLY59 SER60 GLY61 ALA62 TYR63 GLY64 THR65 PHE66 THR67 VAL68 THR69 LYS70 ASP71 ILE72 THR73 LYS74 TYR75 THR76 LYS77 ALA78 LYS79 ILE80 PHE81 SER82 LYS83 VAL84 GLY85 LYS86 LYS87 THR88 GLU89 CYS90 PHE91 PHE92 ARG93 PHE94 SER95 THR96 VAL97 ALA98 GLY99 GLU100 ARG101 GLY102 SER103 ALA104 ASP105 ALA106 VAL107 ARG108 ASP109 PRO110 ARG111 GLY112 PHE113 ALA114 MET115 LYS116 TYR117 TYR118 THR119 GLU120 GLU121 GLY122 ASN123 TRP124 ASP125 LEU126 VAL127 GLY128 ASN129 ASN130 THR131 PRO132 VAL133 PHE134 PHE135 ILE136 ARG137 ASP138 ALA139 ILE140 LYS141 PHE142 PRO143 ASP144 PHE145 ILE146 HIS147 THR148 GLN149 LYS150 ARG151 ASP152 PRO153 GLN154 THR155 ASN156 LEU157 PRO158 ASN159 HIS160 ASP161 MET162 VAL163 TRP164 ASP165 PHE166 TRP167 SER168 ASN169 VAL170 PRO171 GLU172 SER173 LEU174 TYR175 GLN176 VAL177 THR178 TRP179 VAL180 MET181 SER182 ASP183 ARG184 GLY185 ILE186 PRO187 LYS188 SER189 PHE190 ARG191 HIS192 MET193 ASP194 GLY195 PHE196 GLY197 SER198 HIS199 THR200 PHE201 SER202 LEU203 ILE204 ASN205 ALA206 LYS207 GLY208 GLU209 ARG210 PHE211 TRP212 VAL213 LYS214 PHE215 HIS216 PHE217 HIS218 THR219 MET220 GLN221 GLY222 VAL223 LYS224 HIS225 LEU226 THR227 ASN228 GLU229 GLU230 ALA231 ALA232 GLU233 ILE234 ARG235 LYS236 HIS237 ASP238 PRO239 ASP240 SER241 ASN242 GLN243 ARG244 ASP245 LEU246 PHE247 ASP248 ALA249 ILE250 ALA251 ARG252 GLY253 ASP254 TYR255 PRO256 LYS257 TRP258 LYS259 LEU260 SER261 ILE262 GLN263 VAL264 MET265 PRO266 GLU267 GLU268 ASP269 ALA270 LYS271 LYS272 TYR273 ARG274 PHE275 HIS276 PRO277 PHE278 ASP279 VAL280 THR281 LYS282 ILE283 TRP284 TYR285 THR286 GLN287 ASP288 TYR289 PRO290 LEU291 MET292 GLU293 VAL294 GLY295 ILE296 VAL297 GLU298 LEU299 ASN300 LYS301 ASN302 PRO303 GLU304 ASN305 TYR306 PHE307 ALA308 GLU309 VAL310 GLU311 GLN312 ALA313 ALA314 PHE315 THR316 PRO317 ALA318 ASN319 VAL320 VAL321 PRO322 GLY323 ILE324 GLY325 TYR326 SER327 PRO328 ASP329 ARG330 MET331 LEU332 GLN333 GLY334 ARG335 LEU336 PHE337 SER338 TYR339 GLY340 ASP341 THR342 HIS343 ARG344 TYR345 ARG346 LEU347 GLY348 VAL349 ASN350 TYR351 PRO352 GLN353 ILE354 PRO355 VAL356 ASN357 LYS358 PRO359 ARG360 CYS361 PRO362 PHE363 HIS364 SER365 SER366 SER367 ARG368 ASP369 GLY370 TYR371 MET372 GLN373 ASN374 GLY375 TYR376 TYR377 GLY378 SER379 LEU380 GLN381 ASN382 TYR383 THR384 PRO385 SER386 SER387 LEU388 PRO389 GLY390 TYR391 LYS392 GLU393 ASP394 LYS395 SER396 ALA397 ARG398 ASP399 PRO400 LYS401 PHE402 ASN403 LEU404 ALA405 HIS406 ILE407 GLU408 LYS409 GLU410 PHE411 GLU412 VAL413 TRP414 ASN415 TRP416 ASP417 TYR418 ARG419 ALA420 ASP421 ASP422 SER423 ASP424 TYR425 TYR426 THR427 GLN428 PRO429 GLY430 ASP431 TYR432 TYR433 ARG434 SER435 LEU436 PRO437 ALA438 ASP439 GLU440 LYS441 GLU442 ARG443 LEU444 HIS445 ASP446 THR447 ILE448 GLY449 GLU450 SER451 LEU452 ALA453 HIS454 VAL455 THR456 HIS457 LYS458 GLU459 ILE460 VAL461 ASP462 LYS463 GLN464 LEU465 GLU466 HIS467 PHE468 LYS469 LYS470 ALA471 ASP472 PRO473 LYS474 TYR475 ALA476 GLU477 GLY478 VAL479 LYS480 LYS481 ALA482 LEU483 GLU484 LYS485 HIS486 GLN487 LYS488 MET489 MET490
Unit 2 MET1 VAL2 ASN3 LYS4 ASP5 VAL6 LYS7 GLN8 THR9 THR10 ALA11 PHE12 GLY13 ALA14 PRO15 VAL16 TRP17 ASP18 ASP19 ASN20 ASN21 VAL22 ILE23 THR24 ALA25 GLY26 PRO27 ARG28 GLY29 PRO30 VAL31 LEU32 LEU33 GLN34 SER35 THR36 TRP37 PHE38 LEU39 GLU40 LYS41 LEU42 ALA43 ALA44 PHE45 ASP46 ARG47 GLU48 ARG49 ILE50 PRO51 GLU52 ARG53 VAL54 VAL55 HIS56 ALA57 LYS58 GLY59 SER60 GLY61 ALA62 TYR63 GLY64 THR65 PHE66 THR67 VAL68 THR69 LYS70 ASP71 ILE72 THR73 LYS74 TYR75 THR76 LYS77 ALA78 LYS79 ILE80 PHE81 SER82 LYS83 VAL84 GLY85 LYS86 LYS87 THR88 GLU89 CYS90 PHE91 PHE92 ARG93 PHE94 SER95 THR96 VAL97 ALA98 GLY99 GLU100 ARG101 GLY102 SER103 ALA104 ASP105 ALA106 VAL107 ARG108 ASP109 PRO110 ARG111 GLY112 PHE113 ALA114 MET115 LYS116 TYR117 TYR118 THR119 GLU120 GLU121 GLY122 ASN123 TRP124 ASP125 LEU126 VAL127 GLY128 ASN129 ASN130 THR131 PRO132 VAL133 PHE134 PHE135 ILE136 ARG137 ASP138 ALA139 ILE140 LYS141 PHE142 PRO143 ASP144 PHE145 ILE146 HIS147 THR148 GLN149 LYS150 ARG151 ASP152 PRO153 GLN154 THR155 ASN156 LEU157 PRO158 ASN159 HIS160 ASP161 MET162 VAL163 TRP164 ASP165 PHE166 TRP167 SER168 ASN169 VAL170 PRO171 GLU172 SER173 LEU174 TYR175 GLN176 VAL177 THR178 TRP179 VAL180 MET181 SER182 ASP183 ARG184 GLY185 ILE186 PRO187 LYS188 SER189 PHE190 ARG191 HIS192 MET193 ASP194 GLY195 PHE196 GLY197 SER198 HIS199 THR200 PHE201 SER202 LEU203 ILE204 ASN205 ALA206 LYS207 GLY208 GLU209 ARG210 PHE211 TRP212 VAL213 LYS214 PHE215 HIS216 PHE217 HIS218 THR219 MET220 GLN221 GLY222 VAL223 LYS224 HIS225 LEU226 THR227 ASN228 GLU229 GLU230 ALA231 ALA232 GLU233 ILE234 ARG235 LYS236 HIS237 ASP238 PRO239 ASP240 SER241 ASN242 GLN243 ARG244 ASP245 LEU246 PHE247 ASP248 ALA249 ILE250 ALA251 ARG252 GLY253 ASP254 TYR255 PRO256 LYS257 TRP258 LYS259 LEU260 SER261 ILE262 GLN263 VAL264 MET265 PRO266 GLU267 GLU268 ASP269 ALA270 LYS271 LYS272 TYR273 ARG274 PHE275 HIS276 PRO277 PHE278 ASP279 VAL280 THR281 LYS282 ILE283 TRP284 TYR285 THR286 GLN287 ASP288 TYR289 PRO290 LEU291 MET292 GLU293 VAL294 GLY295 ILE296 VAL297 GLU298 LEU299 ASN300 LYS301 ASN302 PRO303 GLU304 ASN305 TYR306 PHE307 ALA308 GLU309 VAL310 GLU311 GLN312 ALA313 ALA314 PHE315 THR316 PRO317 ALA318 ASN319 VAL320 VAL321 PRO322 GLY323 ILE324 GLY325 TYR326 SER327 PRO328 ASP329 ARG330 MET331 LEU332 GLN333 GLY334 ARG335 LEU336 PHE337 SER338 TYR339 GLY340 ASP341 THR342 HIS343 ARG344 TYR345 ARG346 LEU347 GLY348 VAL349 ASN350 TYR351 PRO352 GLN353 ILE354 PRO355 VAL356 ASN357 LYS358 PRO359 ARG360 CYS361 PRO362 PHE363 HIS364 SER365 SER366 SER367 ARG368 ASP369 GLY370 TYR371 MET372 GLN373 ASN374 GLY375 TYR376 TYR377 GLY378 SER379 LEU380 GLN381 ASN382 TYR383 THR384 PRO385 SER386 SER387 LEU388 PRO389 GLY390 TYR391 LYS392 GLU393 ASP394 LYS395 SER396 ALA397 ARG398 ASP399 PRO400 LYS401 PHE402 ASN403 LEU404 ALA405 HIS406 ILE407 GLU408 LYS409 GLU410 PHE411 GLU412 VAL413 TRP414 ASN415 TRP416 ASP417 TYR418 ARG419 ALA420 ASP421 ASP422 SER423 ASP424 TYR425 TYR426 THR427 GLN428 PRO429 GLY430 ASP431 TYR432 TYR433 ARG434 SER435 LEU436 PRO437 ALA438 ASP439 GLU440 LYS441 GLU442 ARG443 LEU444 HIS445 ASP446 THR447 ILE448 GLY449 GLU450 SER451 LEU452 ALA453 HIS454 VAL455 THR456 HIS457 LYS458 GLU459 ILE460 VAL461 ASP462 LYS463 GLN464 LEU465 GLU466 HIS467 PHE468 LYS469 LYS470 ALA471 ASP472 PRO473 LYS474 TYR475 ALA476 GLU477 GLY478 VAL479 LYS480 LYS481 ALA482 LEU483 GLU484 LYS485 HIS486 GLN487 LYS488 MET489 MET490
Ligands
Unit 3 HEM550 FMT1701 FMT1704 FMT1706 FMT1709 FMT1710 FMT1711 FMT1713 FMT1714 FMT1715 FMT1716 FMT1718 FMT1719 FMT1722 FMT1723 FMT1724 FMT1725 FMT1730 FMT1732 FMT1733 FMT1734 FMT1735 AZI2600
Unit 4 HEM550 FMT1702 FMT1703 FMT1705 FMT1707 FMT1708 FMT1712 FMT1717 FMT1720 FMT1721 FMT1726 FMT1727 FMT1728 FMT1729 FMT1731 FMT1736
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany