1QLE - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYO-STRUCTURE OF THE PARACOCCUS DENITRIFICANS FOUR-SUBUNIT C OXIDASE IN THE COMPLETELY OXIDIZED STATE COMPLEXED WITH A FV FRAGMENT
• Keywords: OXIDOREDUCTASE/IMMUNE SYSTEM, COMPLEX (OXIDOREDUCTASE-ANTIBO ELECTRON TRANSPORT, TRANSMEMBRANE, CYTOCHROME OXIDASE, ANTI COMPLEX, OXIDOREDUCTASE-IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1QLE	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CYTOCHROME C OXIDASE POLYPEPTIDE I-BETA	A	538	4269	0
2	Protein	CYTOCHROME C OXIDASE POLYPEPTIDE II	B	252	1977	0
3	Protein	CYTOCHROME C OXIDASE POLYPEPTIDE III	C	273	2181	0
4	Protein	CCYTOCHROME C OXIDASE	D	43	332	0
5	Protein	HEAVY CHAIN ANTIBODY FV FRAGMENT	H	119	938	0
6	Protein	LIGHT CHAIN ANTIBODY FV FRAGMENT	L	108	832	0
7	Ligand	CYTOCHROME C OXIDASE POLYPEPTIDE I-BETA	A	4	0	122
8	Ligand	CYTOCHROME C OXIDASE POLYPEPTIDE II	B	2	0	3
9	Ligand	CYTOCHROME C OXIDASE POLYPEPTIDE III	C	2	0	108
total				1341	10529	233

Proteins

Unit 1	GLY 17 PHE 18 PHE 19 THR 20 ARG 21 TRP 22 PHE 23 MET 24 SER 25 THR 26 ASN 27 HIS 28 LYS 29 ASP 30 ILE 31 GLY 32 ILE 33 LEU 34 TYR 35 LEU 36 PHE 37 THR 38 ALA 39 GLY 40 ILE 41 VAL 42 GLY 43 LEU 44 ILE 45 SER 46 VAL 47 CYS 48 PHE 49 THR 50 VAL 51 TYR 52 MET 53 ARG 54 MET 55 GLU 56 LEU 57 GLN 58 HIS 59 PRO 60 GLY 61 VAL 62 GLN 63 TYR 64 MET 65 CYS 66 LEU 67 GLU 68 GLY 69 ALA 70 ARG 71 LEU 72 ILE 73 ALA 74 ASP 75 ALA 76 SER 77 ALA 78 GLU 79 CYS 80 THR 81 PRO 82 ASN 83 GLY 84 HIS 85 LEU 86 TRP 87 ASN 88 VAL 89 MET 90 ILE 91 THR 92 TYR 93 HIS 94 GLY 95 VAL 96 LEU 97 MET 98 MET 99 PHE 100 PHE 101 VAL 102 VAL 103 ILE 104 PRO 105 ALA 106 LEU 107 PHE 108 GLY 109 GLY 110 PHE 111 GLY 112 ASN 113 TYR 114 PHE 115 MET 116 PRO 117 LEU 118 HIS 119 ILE 120 GLY 121 ALA 122 PRO 123 ASP 124 MET 125 ALA 126 PHE 127 PRO 128 ARG 129 LEU 130 ASN 131 ASN 132 LEU 133 SER 134 TYR 135 TRP 136 MET 137 TYR 138 VAL 139 CYS 140 GLY 141 VAL 142 ALA 143 LEU 144 GLY 145 VAL 146 ALA 147 SER 148 LEU 149 LEU 150 ALA 151 PRO 152 GLY 153 GLY 154 ASN 155 ASP 156 GLN 157 MET 158 GLY 159 SER 160 GLY 161 VAL 162 GLY 163 TRP 164 VAL 165 LEU 166 TYR 167 PRO 168 PRO 169 LEU 170 SER 171 THR 172 THR 173 GLU 174 ALA 175 GLY 176 TYR 177 SER 178 MET 179 ASP 180 LEU 181 ALA 182 ILE 183 PHE 184 ALA 185 VAL 186 HIS 187 VAL 188 SER 189 GLY 190 ALA 191 SER 192 SER 193 ILE 194 LEU 195 GLY 196 ALA 197 ILE 198 ASN 199 ILE 200 ILE 201 THR 202 THR 203 PHE 204 LEU 205 ASN 206 MET 207 ARG 208 ALA 209 PRO 210 GLY 211 MET 212 THR 213 LEU 214 PHE 215 LYS 216 VAL 217 PRO 218 LEU 219 PHE 220 ALA 221 TRP 222 SER 223 VAL 224 PHE 225 ILE 226 THR 227 ALA 228 TRP 229 LEU 230 ILE 231 LEU 232 LEU 233 SER 234 LEU 235 PRO 236 VAL 237 LEU 238 ALA 239 GLY 240 ALA 241 ILE 242 THR 243 MET 244 LEU 245 LEU 246 MET 247 ASP 248 ARG 249 ASN 250 PHE 251 GLY 252 THR 253 GLN 254 PHE 255 PHE 256 ASP 257 PRO 258 ALA 259 GLY 260 GLY 261 GLY 262 ASP 263 PRO 264 VAL 265 LEU 266 TYR 267 GLN 268 HIS 269 ILE 270 LEU 271 TRP 272 PHE 273 PHE 274 GLY 275 HIS 276 PRO 277 GLU 278 VAL 279 TYR 280 ILE 281 ILE 282 ILE 283 LEU 284 PRO 285 GLY 286 PHE 287 GLY 288 ILE 289 ILE 290 SER 291 HIS 292 VAL 293 ILE 294 SER 295 THR 296 PHE 297 ALA 298 LYS 299 LYS 300 PRO 301 ILE 302 PHE 303 GLY 304 TYR 305 LEU 306 PRO 307 MET 308 VAL 309 LEU 310 ALA 311 MET 312 ALA 313 ALA 314 ILE 315 GLY 316 ILE 317 LEU 318 GLY 319 PHE 320 VAL 321 VAL 322 TRP 323 ALA 324 HIS 325 HIS 326 MET 327 TYR 328 THR 329 ALA 330 GLY 331 MET 332 SER 333 LEU 334 THR 335 GLN 336 GLN 337 ALA 338 TYR 339 PHE 340 MET 341 LEU 342 ALA 343 THR 344 MET 345 THR 346 ILE 347 ALA 348 VAL 349 PRO 350 THR 351 GLY 352 ILE 353 LYS 354 VAL 355 PHE 356 SER 357 TRP 358 ILE 359 ALA 360 THR 361 MET 362 TRP 363 GLY 364 GLY 365 SER 366 ILE 367 GLU 368 PHE 369 LYS 370 THR 371 PRO 372 MET 373 LEU 374 TRP 375 ALA 376 PHE 377 GLY 378 PHE 379 LEU 380 PHE 381 LEU 382 PHE 383 THR 384 VAL 385 GLY 386 GLY 387 VAL 388 THR 389 GLY 390 VAL 391 VAL 392 LEU 393 SER 394 GLN 395 ALA 396 PRO 397 LEU 398 ASP 399 ARG 400 VAL 401 TYR 402 HIS 403 ASP 404 THR 405 TYR 406 TYR 407 VAL 408 VAL 409 ALA 410 HIS 411 PHE 412 HIS 413 TYR 414 VAL 415 MET 416 SER 417 LEU 418 GLY 419 ALA 420 VAL 421 PHE 422 GLY 423 ILE 424 PHE 425 ALA 426 GLY 427 VAL 428 TYR 429 TYR 430 TRP 431 ILE 432 GLY 433 LYS 434 MET 435 SER 436 GLY 437 ARG 438 GLN 439 TYR 440 PRO 441 GLU 442 TRP 443 ALA 444 GLY 445 GLN 446 LEU 447 HIS 448 PHE 449 TRP 450 MET 451 MET 452 PHE 453 ILE 454 GLY 455 SER 456 ASN 457 LEU 458 ILE 459 PHE 460 PHE 461 PRO 462 GLN 463 HIS 464 PHE 465 LEU 466 GLY 467 ARG 468 GLN 469 GLY 470 MET 471 PRO 472 ARG 473 ARG 474 TYR 475 ILE 476 ASP 477 TYR 478 PRO 479 VAL 480 GLU 481 PHE 482 ALA 483 TYR 484 TRP 485 ASN 486 ASN 487 ILE 488 SER 489 SER 490 ILE 491 GLY 492 ALA 493 TYR 494 ILE 495 SER 496 PHE 497 ALA 498 SER 499 PHE 500 LEU 501 PHE 502 PHE 503 ILE 504 GLY 505 ILE 506 VAL 507 PHE 508 TYR 509 THR 510 LEU 511 PHE 512 ALA 513 GLY 514 LYS 515 ARG 516 VAL 517 ASN 518 VAL 519 PRO 520 ASN 521 TYR 522 TRP 523 ASN 524 GLU 525 HIS 526 ALA 527 ASP 528 THR 529 LEU 530 GLU 531 TRP 532 THR 533 LEU 534 PRO 535 SER 536 PRO 537 PRO 538 PRO 539 GLU 540 HIS 541 THR 542 PHE 543 GLU 544 THR 545 LEU 546 PRO 547 LYS 548 ARG 549 GLU 550 ASP 551 TRP 552 ASP 553 ARG 554
Unit 2	GLN 1 ASP 2 VAL 3 LEU 4 GLY 5 ASP 6 LEU 7 PRO 8 VAL 9 ILE 10 GLY 11 LYS 12 PRO 13 VAL 14 ASN 15 GLY 16 GLY 17 MET 18 ASN 19 PHE 20 GLN 21 PRO 22 ALA 23 SER 24 SER 25 PRO 26 LEU 27 ALA 28 HIS 29 ASP 30 GLN 31 GLN 32 TRP 33 LEU 34 ASP 35 HIS 36 PHE 37 VAL 38 LEU 39 TYR 40 ILE 41 ILE 42 THR 43 ALA 44 VAL 45 THR 46 ILE 47 PHE 48 VAL 49 CYS 50 LEU 51 LEU 52 LEU 53 LEU 54 ILE 55 CYS 56 ILE 57 VAL 58 ARG 59 PHE 60 ASN 61 ARG 62 ARG 63 ALA 64 ASN 65 PRO 66 VAL 67 PRO 68 ALA 69 ARG 70 PHE 71 THR 72 HIS 73 ASN 74 THR 75 PRO 76 ILE 77 GLU 78 VAL 79 ILE 80 TRP 81 THR 82 LEU 83 VAL 84 PRO 85 VAL 86 LEU 87 ILE 88 LEU 89 VAL 90 ALA 91 ILE 92 GLY 93 ALA 94 PHE 95 SER 96 LEU 97 PRO 98 ILE 99 LEU 100 PHE 101 ARG 102 SER 103 GLN 104 GLU 105 MET 106 PRO 107 ASN 108 ASP 109 PRO 110 ASP 111 LEU 112 VAL 113 ILE 114 LYS 115 ALA 116 ILE 117 GLY 118 HIS 119 GLN 120 TRP 121 TYR 122 TRP 123 SER 124 TYR 125 GLU 126 TYR 127 PRO 128 ASN 129 ASP 130 GLY 131 VAL 132 ALA 133 PHE 134 ASP 135 ALA 136 LEU 137 MET 138 LEU 139 GLU 140 LYS 141 GLU 142 ALA 143 LEU 144 ALA 145 ASP 146 ALA 147 GLY 148 TYR 149 SER 150 GLU 151 ASP 152 GLU 153 TYR 154 LEU 155 LEU 156 ALA 157 THR 158 ASP 159 ASN 160 PRO 161 VAL 162 VAL 163 VAL 164 PRO 165 VAL 166 GLY 167 LYS 168 LYS 169 VAL 170 LEU 171 VAL 172 GLN 173 VAL 174 THR 175 ALA 176 THR 177 ASP 178 VAL 179 ILE 180 HIS 181 ALA 182 TRP 183 THR 184 ILE 185 PRO 186 ALA 187 PHE 188 ALA 189 VAL 190 LYS 191 GLN 192 ASP 193 ALA 194 VAL 195 PRO 196 GLY 197 ARG 198 ILE 199 ALA 200 GLN 201 LEU 202 TRP 203 PHE 204 SER 205 VAL 206 ASP 207 GLN 208 GLU 209 GLY 210 VAL 211 TYR 212 PHE 213 GLY 214 GLN 215 CYS 216 SER 217 GLU 218 LEU 219 CYS 220 GLY 221 ILE 222 ASN 223 HIS 224 ALA 225 TYR 226 MET 227 PRO 228 ILE 229 VAL 230 VAL 231 LYS 232 ALA 233 VAL 234 SER 235 GLN 236 GLU 237 LYS 238 TYR 239 GLU 240 ALA 241 TRP 242 LEU 243 ALA 244 GLY 245 ALA 246 LYS 247 GLU 248 GLU 249 PHE 250 ALA 251 ALA 252
Unit 3	ALA 1 HIS 2 VAL 3 LYS 4 ASN 5 HIS 6 ASP 7 TYR 8 GLN 9 ILE 10 LEU 11 PRO 12 PRO 13 SER 14 ILE 15 TRP 16 PRO 17 PHE 18 PHE 19 GLY 20 ALA 21 ILE 22 GLY 23 ALA 24 PHE 25 VAL 26 MET 27 LEU 28 THR 29 GLY 30 ALA 31 VAL 32 ALA 33 TRP 34 MET 35 LYS 36 GLY 37 ILE 38 THR 39 PHE 40 PHE 41 GLY 42 LEU 43 PRO 44 VAL 45 GLU 46 GLY 47 PRO 48 TRP 49 MET 50 PHE 51 LEU 52 ILE 53 GLY 54 LEU 55 VAL 56 GLY 57 VAL 58 LEU 59 TYR 60 VAL 61 MET 62 PHE 63 GLY 64 TRP 65 TRP 66 ALA 67 ASP 68 VAL 69 VAL 70 ASN 71 GLU 72 GLY 73 GLU 74 THR 75 GLY 76 GLU 77 HIS 78 THR 79 PRO 80 VAL 81 VAL 82 ARG 83 ILE 84 GLY 85 LEU 86 GLN 87 TYR 88 GLY 89 PHE 90 ILE 91 LEU 92 PHE 93 ILE 94 MET 95 SER 96 GLU 97 VAL 98 MET 99 PHE 100 PHE 101 VAL 102 ALA 103 TRP 104 PHE 105 TRP 106 ALA 107 PHE 108 ILE 109 LYS 110 ASN 111 ALA 112 LEU 113 TYR 114 PRO 115 MET 116 GLY 117 PRO 118 ASP 119 SER 120 PRO 121 ILE 122 LYS 123 ASP 124 GLY 125 VAL 126 TRP 127 PRO 128 PRO 129 GLU 130 GLY 131 ILE 132 VAL 133 THR 134 PHE 135 ASP 136 PRO 137 TRP 138 HIS 139 LEU 140 PRO 141 LEU 142 ILE 143 ASN 144 THR 145 LEU 146 ILE 147 LEU 148 LEU 149 LEU 150 SER 151 GLY 152 VAL 153 ALA 154 VAL 155 THR 156 TRP 157 ALA 158 HIS 159 HIS 160 ALA 161 PHE 162 VAL 163 LEU 164 GLU 165 GLY 166 ASP 167 ARG 168 LYS 169 THR 170 THR 171 ILE 172 ASN 173 GLY 174 LEU 175 ILE 176 VAL 177 ALA 178 VAL 179 ILE 180 LEU 181 GLY 182 VAL 183 CYS 184 PHE 185 THR 186 GLY 187 LEU 188 GLN 189 ALA 190 TYR 191 GLU 192 TYR 193 SER 194 HIS 195 ALA 196 ALA 197 PHE 198 GLY 199 LEU 200 ALA 201 ASP 202 THR 203 VAL 204 TYR 205 ALA 206 GLY 207 ALA 208 PHE 209 TYR 210 MET 211 ALA 212 THR 213 GLY 214 PHE 215 HIS 216 GLY 217 ALA 218 HIS 219 VAL 220 ILE 221 ILE 222 GLY 223 THR 224 ILE 225 PHE 226 LEU 227 PHE 228 VAL 229 CYS 230 LEU 231 ILE 232 ARG 233 LEU 234 LEU 235 LYS 236 GLY 237 GLN 238 MET 239 THR 240 GLN 241 LYS 242 GLN 243 HIS 244 VAL 245 GLY 246 PHE 247 GLU 248 ALA 249 ALA 250 ALA 251 TRP 252 TYR 253 TRP 254 HIS 255 PHE 256 VAL 257 ASP 258 VAL 259 VAL 260 TRP 261 LEU 262 PHE 263 LEU 264 PHE 265 VAL 266 VAL 267 ILE 268 TYR 269 ILE 270 TRP 271 GLY 272 ARG 273
Unit 4	THR 7 ASP 8 HIS 9 LYS 10 HIS 11 GLY 12 GLU 13 MET 14 ASP 15 ILE 16 ARG 17 HIS 18 GLN 19 GLN 20 ALA 21 THR 22 PHE 23 ALA 24 GLY 25 PHE 26 ILE 27 LYS 28 GLY 29 ALA 30 THR 31 TRP 32 VAL 33 SER 34 ILE 35 LEU 36 SER 37 ILE 38 ALA 39 VAL 40 LEU 41 VAL 42 PHE 43 LEU 44 ALA 45 LEU 46 ALA 47 ASN 48 SER 49
Unit 5	GLU 1 VAL 2 LYS 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 ASP 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 LYS 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 SER 31 TYR 32 THR 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 THR 40 PRO 41 GLU 42 LYS 43 ARG 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 SER 50 ILE 51 ASN 52 ASN 53 GLY 54 GLY 55 GLY 56 ARG 57 THR 58 TYR 59 TYR 60 PRO 61 ASP 62 THR 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 ALA 75 LYS 76 ASN 77 THR 78 LEU 79 TYR 80 LEU 81 GLN 82 MET 83 SER 84 SER 85 LEU 86 LYS 87 SER 88 GLU 89 ASP 90 THR 91 ALA 92 MET 93 TYR 94 TYR 95 CYS 96 VAL 97 ARG 98 HIS 99 GLU 100 TYR 101 TYR 102 TYR 103 ALA 104 MET 105 ASP 106 TYR 107 TRP 108 GLY 109 GLN 110 GLY 111 THR 112 THR 113 VAL 114 THR 115 VAL 116 SER 117 SER 118 ALA 119
Unit 6	ASP 1 ILE 2 GLU 3 LEU 4 THR 5 GLN 6 THR 7 PRO 8 VAL 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 GLU 17 THR 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLU 27 ASN 28 ILE 29 TYR 30 SER 31 TYR 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 GLN 40 GLY 41 LYS 42 SER 43 PRO 44 GLN 45 PHE 46 LEU 47 VAL 48 TYR 49 ASN 50 ALA 51 LYS 52 THR 53 LEU 54 GLY 55 GLU 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 GLN 70 PHE 71 SER 72 LEU 73 LYS 74 ILE 75 ASN 76 SER 77 LEU 78 LEU 79 PRO 80 GLU 81 ASP 82 PHE 83 GLY 84 SER 85 TYR 86 TYR 87 CYS 88 GLN 89 HIS 90 HIS 91 TYR 92 GLY 93 THR 94 PRO 95 PRO 96 LEU 97 THR 98 PHE 99 GLY 100 GLY 101 GLY 102 THR 103 LYS 104 LEU 105 GLU 106 ILE 107 LYS 108

Ligands

Unit 7	HEA 601 HEA 602 CU 603 CA 604
Unit 8	CUA 301 MN 302
Unit 9	PC1 301 PC1 302