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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE E.COLI PYRIMIDINE NUCLEOSIDE HYDROL
Keywords OPEN ALPHA-BETA STRUCTURE, NH-FOLD, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1Q8F     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYRIMIDINE NUCLEOSIDE HYDROLASE  A 308 2315 0
2  Protein   PYRIMIDINE NUCLEOSIDE HYDROLASE  B 308 2315 0
3  Protein   PYRIMIDINE NUCLEOSIDE HYDROLASE  C 308 2315 0
4  Protein   PYRIMIDINE NUCLEOSIDE HYDROLASE  D 308 2315 0
5  Ligand   PYRIMIDINE NUCLEOSIDE HYDROLASE  A 6 0 31
6  Ligand   PYRIMIDINE NUCLEOSIDE HYDROLASE  B 4 0 19
7  Ligand   PYRIMIDINE NUCLEOSIDE HYDROLASE  C 5 0 25
8  Ligand   PYRIMIDINE NUCLEOSIDE HYDROLASE  D 5 0 25
9 Water     1055 0 1055
total       2307 9260 1155
Proteins
Unit 1 LYS3 ARG4 LYS5 ILE6 ILE7 LEU8 ASP9 CYS10 ASP11 PRO12 GLY13 HIS14 ASP15 ASP16 ALA17 ILE18 ALA19 ILE20 MET21 MET22 ALA23 ALA24 LYS25 HIS26 PRO27 ALA28 ILE29 ASP30 LEU31 LEU32 GLY33 ILE34 THR35 ILE36 VAL37 ALA38 GLY39 ASN40 GLN41 THR42 LEU43 ASP44 LYS45 THR46 LEU47 ILE48 ASN49 GLY50 LEU51 ASN52 VAL53 CYS54 GLN55 LYS56 LEU57 GLU58 ILE59 ASN60 VAL61 PRO62 VAL63 TYR64 ALA65 GLY66 MET67 PRO68 GLN69 PRO70 ILE71 MET72 ARG73 GLN74 GLN75 ILE76 VAL77 ALA78 ASP79 ASN80 ILE81 HIS82 GLY83 ASP84 THR85 GLY86 LEU87 ASP88 GLY89 PRO90 VAL91 PHE92 GLU93 PRO94 LEU95 THR96 ARG97 GLN98 ALA99 GLU100 SER101 THR102 HIS103 ALA104 VAL105 LYS106 TYR107 ILE108 ILE109 ASP110 THR111 LEU112 MET113 ALA114 SER115 ASP116 GLY117 ASP118 ILE119 THR120 LEU121 VAL122 PRO123 VAL124 GLY125 PRO126 LEU127 SER128 ASN129 ILE130 ALA131 VAL132 ALA133 MET134 ARG135 MET136 GLN137 PRO138 ALA139 ILE140 LEU141 PRO142 LYS143 ILE144 ARG145 GLU146 ILE147 VAL148 LEU149 MET150 GLY151 GLY152 ALA153 TYR154 GLY155 THR156 GLY157 ASN158 PHE159 THR160 PRO161 SER162 ALA163 GLU164 PHE165 ASN166 ILE167 PHE168 ALA169 ASP170 PRO171 GLU172 ALA173 ALA174 ARG175 VAL176 VAL177 PHE178 THR179 SER180 GLY181 VAL182 PRO183 LEU184 VAL185 MET186 MET187 GLY188 LEU189 ASP190 LEU191 THR192 ASN193 GLN194 THR195 VAL196 CYS197 THR198 PRO199 ASP200 VAL201 ILE202 ALA203 ARG204 MET205 GLU206 ARG207 ALA208 GLY209 GLY210 PRO211 ALA212 GLY213 GLU214 LEU215 PHE216 SER217 ASP218 ILE219 MET220 ASN221 PHE222 THR223 LEU224 LYS225 THR226 GLN227 PHE228 GLU229 ASN230 TYR231 GLY232 LEU233 ALA234 GLY235 GLY236 PRO237 VAL238 HIS239 ASP240 ALA241 THR242 CYS243 ILE244 GLY245 TYR246 LEU247 ILE248 ASN249 PRO250 ASP251 GLY252 ILE253 LYS254 THR255 GLN256 GLU257 MET258 TYR259 VAL260 GLU261 VAL262 ASP263 VAL264 ASN265 SER266 GLY267 PRO268 CYS269 TYR270 GLY271 ARG272 THR273 VAL274 CYS275 ASP276 GLU277 LEU278 GLY279 VAL280 LEU281 GLY282 LYS283 PRO284 ALA285 ASN286 THR287 LYS288 VAL289 GLY290 ILE291 THR292 ILE293 ASP294 THR295 ASP296 TRP297 PHE298 TRP299 GLY300 LEU301 VAL302 GLU303 GLU304 CYS305 VAL306 ARG307 GLY308 TYR309 ILE310
Unit 2 LYS3 ARG4 LYS5 ILE6 ILE7 LEU8 ASP9 CYS10 ASP11 PRO12 GLY13 HIS14 ASP15 ASP16 ALA17 ILE18 ALA19 ILE20 MET21 MET22 ALA23 ALA24 LYS25 HIS26 PRO27 ALA28 ILE29 ASP30 LEU31 LEU32 GLY33 ILE34 THR35 ILE36 VAL37 ALA38 GLY39 ASN40 GLN41 THR42 LEU43 ASP44 LYS45 THR46 LEU47 ILE48 ASN49 GLY50 LEU51 ASN52 VAL53 CYS54 GLN55 LYS56 LEU57 GLU58 ILE59 ASN60 VAL61 PRO62 VAL63 TYR64 ALA65 GLY66 MET67 PRO68 GLN69 PRO70 ILE71 MET72 ARG73 GLN74 GLN75 ILE76 VAL77 ALA78 ASP79 ASN80 ILE81 HIS82 GLY83 ASP84 THR85 GLY86 LEU87 ASP88 GLY89 PRO90 VAL91 PHE92 GLU93 PRO94 LEU95 THR96 ARG97 GLN98 ALA99 GLU100 SER101 THR102 HIS103 ALA104 VAL105 LYS106 TYR107 ILE108 ILE109 ASP110 THR111 LEU112 MET113 ALA114 SER115 ASP116 GLY117 ASP118 ILE119 THR120 LEU121 VAL122 PRO123 VAL124 GLY125 PRO126 LEU127 SER128 ASN129 ILE130 ALA131 VAL132 ALA133 MET134 ARG135 MET136 GLN137 PRO138 ALA139 ILE140 LEU141 PRO142 LYS143 ILE144 ARG145 GLU146 ILE147 VAL148 LEU149 MET150 GLY151 GLY152 ALA153 TYR154 GLY155 THR156 GLY157 ASN158 PHE159 THR160 PRO161 SER162 ALA163 GLU164 PHE165 ASN166 ILE167 PHE168 ALA169 ASP170 PRO171 GLU172 ALA173 ALA174 ARG175 VAL176 VAL177 PHE178 THR179 SER180 GLY181 VAL182 PRO183 LEU184 VAL185 MET186 MET187 GLY188 LEU189 ASP190 LEU191 THR192 ASN193 GLN194 THR195 VAL196 CYS197 THR198 PRO199 ASP200 VAL201 ILE202 ALA203 ARG204 MET205 GLU206 ARG207 ALA208 GLY209 GLY210 PRO211 ALA212 GLY213 GLU214 LEU215 PHE216 SER217 ASP218 ILE219 MET220 ASN221 PHE222 THR223 LEU224 LYS225 THR226 GLN227 PHE228 GLU229 ASN230 TYR231 GLY232 LEU233 ALA234 GLY235 GLY236 PRO237 VAL238 HIS239 ASP240 ALA241 THR242 CYS243 ILE244 GLY245 TYR246 LEU247 ILE248 ASN249 PRO250 ASP251 GLY252 ILE253 LYS254 THR255 GLN256 GLU257 MET258 TYR259 VAL260 GLU261 VAL262 ASP263 VAL264 ASN265 SER266 GLY267 PRO268 CYS269 TYR270 GLY271 ARG272 THR273 VAL274 CYS275 ASP276 GLU277 LEU278 GLY279 VAL280 LEU281 GLY282 LYS283 PRO284 ALA285 ASN286 THR287 LYS288 VAL289 GLY290 ILE291 THR292 ILE293 ASP294 THR295 ASP296 TRP297 PHE298 TRP299 GLY300 LEU301 VAL302 GLU303 GLU304 CYS305 VAL306 ARG307 GLY308 TYR309 ILE310
Unit 3 LYS3 ARG4 LYS5 ILE6 ILE7 LEU8 ASP9 CYS10 ASP11 PRO12 GLY13 HIS14 ASP15 ASP16 ALA17 ILE18 ALA19 ILE20 MET21 MET22 ALA23 ALA24 LYS25 HIS26 PRO27 ALA28 ILE29 ASP30 LEU31 LEU32 GLY33 ILE34 THR35 ILE36 VAL37 ALA38 GLY39 ASN40 GLN41 THR42 LEU43 ASP44 LYS45 THR46 LEU47 ILE48 ASN49 GLY50 LEU51 ASN52 VAL53 CYS54 GLN55 LYS56 LEU57 GLU58 ILE59 ASN60 VAL61 PRO62 VAL63 TYR64 ALA65 GLY66 MET67 PRO68 GLN69 PRO70 ILE71 MET72 ARG73 GLN74 GLN75 ILE76 VAL77 ALA78 ASP79 ASN80 ILE81 HIS82 GLY83 ASP84 THR85 GLY86 LEU87 ASP88 GLY89 PRO90 VAL91 PHE92 GLU93 PRO94 LEU95 THR96 ARG97 GLN98 ALA99 GLU100 SER101 THR102 HIS103 ALA104 VAL105 LYS106 TYR107 ILE108 ILE109 ASP110 THR111 LEU112 MET113 ALA114 SER115 ASP116 GLY117 ASP118 ILE119 THR120 LEU121 VAL122 PRO123 VAL124 GLY125 PRO126 LEU127 SER128 ASN129 ILE130 ALA131 VAL132 ALA133 MET134 ARG135 MET136 GLN137 PRO138 ALA139 ILE140 LEU141 PRO142 LYS143 ILE144 ARG145 GLU146 ILE147 VAL148 LEU149 MET150 GLY151 GLY152 ALA153 TYR154 GLY155 THR156 GLY157 ASN158 PHE159 THR160 PRO161 SER162 ALA163 GLU164 PHE165 ASN166 ILE167 PHE168 ALA169 ASP170 PRO171 GLU172 ALA173 ALA174 ARG175 VAL176 VAL177 PHE178 THR179 SER180 GLY181 VAL182 PRO183 LEU184 VAL185 MET186 MET187 GLY188 LEU189 ASP190 LEU191 THR192 ASN193 GLN194 THR195 VAL196 CYS197 THR198 PRO199 ASP200 VAL201 ILE202 ALA203 ARG204 MET205 GLU206 ARG207 ALA208 GLY209 GLY210 PRO211 ALA212 GLY213 GLU214 LEU215 PHE216 SER217 ASP218 ILE219 MET220 ASN221 PHE222 THR223 LEU224 LYS225 THR226 GLN227 PHE228 GLU229 ASN230 TYR231 GLY232 LEU233 ALA234 GLY235 GLY236 PRO237 VAL238 HIS239 ASP240 ALA241 THR242 CYS243 ILE244 GLY245 TYR246 LEU247 ILE248 ASN249 PRO250 ASP251 GLY252 ILE253 LYS254 THR255 GLN256 GLU257 MET258 TYR259 VAL260 GLU261 VAL262 ASP263 VAL264 ASN265 SER266 GLY267 PRO268 CYS269 TYR270 GLY271 ARG272 THR273 VAL274 CYS275 ASP276 GLU277 LEU278 GLY279 VAL280 LEU281 GLY282 LYS283 PRO284 ALA285 ASN286 THR287 LYS288 VAL289 GLY290 ILE291 THR292 ILE293 ASP294 THR295 ASP296 TRP297 PHE298 TRP299 GLY300 LEU301 VAL302 GLU303 GLU304 CYS305 VAL306 ARG307 GLY308 TYR309 ILE310
Unit 4 LYS3 ARG4 LYS5 ILE6 ILE7 LEU8 ASP9 CYS10 ASP11 PRO12 GLY13 HIS14 ASP15 ASP16 ALA17 ILE18 ALA19 ILE20 MET21 MET22 ALA23 ALA24 LYS25 HIS26 PRO27 ALA28 ILE29 ASP30 LEU31 LEU32 GLY33 ILE34 THR35 ILE36 VAL37 ALA38 GLY39 ASN40 GLN41 THR42 LEU43 ASP44 LYS45 THR46 LEU47 ILE48 ASN49 GLY50 LEU51 ASN52 VAL53 CYS54 GLN55 LYS56 LEU57 GLU58 ILE59 ASN60 VAL61 PRO62 VAL63 TYR64 ALA65 GLY66 MET67 PRO68 GLN69 PRO70 ILE71 MET72 ARG73 GLN74 GLN75 ILE76 VAL77 ALA78 ASP79 ASN80 ILE81 HIS82 GLY83 ASP84 THR85 GLY86 LEU87 ASP88 GLY89 PRO90 VAL91 PHE92 GLU93 PRO94 LEU95 THR96 ARG97 GLN98 ALA99 GLU100 SER101 THR102 HIS103 ALA104 VAL105 LYS106 TYR107 ILE108 ILE109 ASP110 THR111 LEU112 MET113 ALA114 SER115 ASP116 GLY117 ASP118 ILE119 THR120 LEU121 VAL122 PRO123 VAL124 GLY125 PRO126 LEU127 SER128 ASN129 ILE130 ALA131 VAL132 ALA133 MET134 ARG135 MET136 GLN137 PRO138 ALA139 ILE140 LEU141 PRO142 LYS143 ILE144 ARG145 GLU146 ILE147 VAL148 LEU149 MET150 GLY151 GLY152 ALA153 TYR154 GLY155 THR156 GLY157 ASN158 PHE159 THR160 PRO161 SER162 ALA163 GLU164 PHE165 ASN166 ILE167 PHE168 ALA169 ASP170 PRO171 GLU172 ALA173 ALA174 ARG175 VAL176 VAL177 PHE178 THR179 SER180 GLY181 VAL182 PRO183 LEU184 VAL185 MET186 MET187 GLY188 LEU189 ASP190 LEU191 THR192 ASN193 GLN194 THR195 VAL196 CYS197 THR198 PRO199 ASP200 VAL201 ILE202 ALA203 ARG204 MET205 GLU206 ARG207 ALA208 GLY209 GLY210 PRO211 ALA212 GLY213 GLU214 LEU215 PHE216 SER217 ASP218 ILE219 MET220 ASN221 PHE222 THR223 LEU224 LYS225 THR226 GLN227 PHE228 GLU229 ASN230 TYR231 GLY232 LEU233 ALA234 GLY235 GLY236 PRO237 VAL238 HIS239 ASP240 ALA241 THR242 CYS243 ILE244 GLY245 TYR246 LEU247 ILE248 ASN249 PRO250 ASP251 GLY252 ILE253 LYS254 THR255 GLN256 GLU257 MET258 TYR259 VAL260 GLU261 VAL262 ASP263 VAL264 ASN265 SER266 GLY267 PRO268 CYS269 TYR270 GLY271 ARG272 THR273 VAL274 CYS275 ASP276 GLU277 LEU278 GLY279 VAL280 LEU281 GLY282 LYS283 PRO284 ALA285 ASN286 THR287 LYS288 VAL289 GLY290 ILE291 THR292 ILE293 ASP294 THR295 ASP296 TRP297 PHE298 TRP299 GLY300 LEU301 VAL302 GLU303 GLU304 CYS305 VAL306 ARG307 GLY308 TYR309 ILE310
Ligands
Unit 5 CA2001 GOL3001 GOL3005 GOL3009 GOL3010 GOL3015
Unit 6 CA2002 GOL3002 GOL3006 GOL3011
Unit 7 CA2003 GOL3003 GOL3007 GOL3012 GOL3016
Unit 8 CA2004 GOL3004 GOL3008 GOL3014 GOL3017
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany