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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE STREPTOCOCCAL PYROGENIC EXOTOXIN B INHIBITOR COMPLEX
Keywords STREPTOCOCCUS PYOGENES EXOTOXIN(SPEB), Z-F-CH2N2- BENZYLOXYC PHENYLALANYL ALANYL DIAZOMETHANE., TOXIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1PVJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYROGENIC EXOTOXIN B  A 339 2603 0
2  Protein   PYROGENIC EXOTOXIN B  B 339 2603 0
3  Protein   PYROGENIC EXOTOXIN B  C 339 2603 0
4  Protein   PYROGENIC EXOTOXIN B  D 339 2603 0
5  Ligand   PYROGENIC EXOTOXIN B  A 1 0 22
6  Ligand   PYROGENIC EXOTOXIN B  B 1 0 22
7  Ligand   PYROGENIC EXOTOXIN B  C 1 0 22
8  Ligand   PYROGENIC EXOTOXIN B  D 1 0 22
9 Water     552 0 552
total       1912 10412 640
Proteins
Unit 1 PHE31 ALA32 ARG33 ASN34 GLU35 LYS36 GLU37 ALA38 LYS39 ASP40 SER41 ALA42 ILE43 THR44 PHE45 ILE46 GLN47 LYS48 ILE62 LYS63 LEU64 ASP65 LYS66 VAL67 ASN68 LEU69 GLY70 GLY71 GLU72 LEU73 SER74 GLY75 SER76 ASN77 MET78 TYR79 VAL80 TYR81 ASN82 ILE83 SER84 THR85 GLY86 GLY87 PHE88 VAL89 ILE90 VAL91 SER92 GLY93 ASP94 LYS95 ARG96 SER97 PRO98 GLU99 ILE100 LEU101 GLY102 TYR103 SER104 THR105 SER106 GLY107 SER108 PHE109 ASP110 ALA111 ASN112 GLY113 LYS114 GLU115 ASN116 ILE117 ALA118 SER119 PHE120 MET121 GLU122 SER123 TYR124 VAL125 GLU126 GLN127 ILE128 LYS129 GLU130 ASN131 LYS132 LYS133 LEU134 ASP135 THR136 THR137 TYR138 ALA139 GLN146 PRO147 VAL148 VAL149 LYS150 SER151 LEU152 LEU153 ASP154 SER155 LYS156 GLY157 ILE158 HIS159 TYR160 ASN161 GLN162 GLY163 ASN164 PRO165 TYR166 ASN167 LEU168 LEU169 THR170 PRO171 VAL172 ILE173 GLU174 LYS175 VAL176 LYS177 PRO178 GLY179 GLU180 GLN181 SER182 PHE183 VAL184 GLY185 GLN186 HIS187 ALA188 ALA189 THR190 GLY191 CYS192 VAL193 ALA194 THR195 ALA196 THR197 ALA198 GLN199 ILE200 MET201 LYS202 TYR203 HIS204 ASN205 TYR206 PRO207 ASN208 LYS209 GLY210 LEU211 LYS212 ASP213 TYR214 THR215 TYR216 THR217 LEU218 SER219 SER220 ASN221 ASN222 PRO223 TYR224 PHE225 ASN226 HIS227 PRO228 LYS229 ASN230 LEU231 PHE232 ALA233 ALA234 ILE235 SER236 THR237 ARG238 GLN239 TYR240 ASN241 TRP242 ASN243 ASN244 ILE245 LEU246 PRO247 THR248 TYR249 SER250 GLY251 ARG252 GLU253 SER254 ASN255 VAL256 GLN257 LYS258 MET259 ALA260 ILE261 SER262 GLU263 LEU264 MET265 ALA266 ASP267 VAL268 GLY269 ILE270 SER271 VAL272 ASP273 MET274 ASP275 TYR276 GLY277 PRO278 SER279 SER280 GLY281 SER282 ALA283 GLY284 SER285 SER286 ARG287 VAL288 GLN289 ARG290 ALA291 LEU292 LYS293 GLU294 ASN295 PHE296 GLY297 TYR298 ASN299 GLN300 SER301 VAL302 HIS303 GLN304 ILE305 ASN306 ARG307 GLY308 ASP309 PHE310 SER311 LYS312 GLN313 ASP314 TRP315 GLU316 ALA317 GLN318 ILE319 ASP320 LYS321 GLU322 LEU323 SER324 GLN325 ASN326 GLN327 PRO328 VAL329 TYR330 TYR331 GLN332 GLY333 VAL334 GLY335 LYS336 VAL337 GLY338 GLY339 HIS340 ALA341 PHE342 VAL343 ILE344 ASP345 GLY346 ALA347 ASP348 GLY349 ARG350 ASN351 PHE352 TYR353 HIS354 VAL355 ASN356 TRP357 GLY358 TRP359 GLY360 GLY361 VAL362 SER363 ASP364 GLY365 PHE366 PHE367 ARG368 LEU369 ASP370 ALA371 LEU372 ASN373 PRO374 GLY385 PHE386 ASN387 GLY388 TYR389 GLN390 SER391 ALA392 VAL393 VAL394 GLY395 ILE396 LYS397 PRO398
Unit 2 PHE31 ALA32 ARG33 ASN34 GLU35 LYS36 GLU37 ALA38 LYS39 ASP40 SER41 ALA42 ILE43 THR44 PHE45 ILE46 GLN47 LYS48 ILE62 LYS63 LEU64 ASP65 LYS66 VAL67 ASN68 LEU69 GLY70 GLY71 GLU72 LEU73 SER74 GLY75 SER76 ASN77 MET78 TYR79 VAL80 TYR81 ASN82 ILE83 SER84 THR85 GLY86 GLY87 PHE88 VAL89 ILE90 VAL91 SER92 GLY93 ASP94 LYS95 ARG96 SER97 PRO98 GLU99 ILE100 LEU101 GLY102 TYR103 SER104 THR105 SER106 GLY107 SER108 PHE109 ASP110 ALA111 ASN112 GLY113 LYS114 GLU115 ASN116 ILE117 ALA118 SER119 PHE120 MET121 GLU122 SER123 TYR124 VAL125 GLU126 GLN127 ILE128 LYS129 GLU130 ASN131 LYS132 LYS133 LEU134 ASP135 THR136 THR137 TYR138 ALA139 GLN146 PRO147 VAL148 VAL149 LYS150 SER151 LEU152 LEU153 ASP154 SER155 LYS156 GLY157 ILE158 HIS159 TYR160 ASN161 GLN162 GLY163 ASN164 PRO165 TYR166 ASN167 LEU168 LEU169 THR170 PRO171 VAL172 ILE173 GLU174 LYS175 VAL176 LYS177 PRO178 GLY179 GLU180 GLN181 SER182 PHE183 VAL184 GLY185 GLN186 HIS187 ALA188 ALA189 THR190 GLY191 CYS192 VAL193 ALA194 THR195 ALA196 THR197 ALA198 GLN199 ILE200 MET201 LYS202 TYR203 HIS204 ASN205 TYR206 PRO207 ASN208 LYS209 GLY210 LEU211 LYS212 ASP213 TYR214 THR215 TYR216 THR217 LEU218 SER219 SER220 ASN221 ASN222 PRO223 TYR224 PHE225 ASN226 HIS227 PRO228 LYS229 ASN230 LEU231 PHE232 ALA233 ALA234 ILE235 SER236 THR237 ARG238 GLN239 TYR240 ASN241 TRP242 ASN243 ASN244 ILE245 LEU246 PRO247 THR248 TYR249 SER250 GLY251 ARG252 GLU253 SER254 ASN255 VAL256 GLN257 LYS258 MET259 ALA260 ILE261 SER262 GLU263 LEU264 MET265 ALA266 ASP267 VAL268 GLY269 ILE270 SER271 VAL272 ASP273 MET274 ASP275 TYR276 GLY277 PRO278 SER279 SER280 GLY281 SER282 ALA283 GLY284 SER285 SER286 ARG287 VAL288 GLN289 ARG290 ALA291 LEU292 LYS293 GLU294 ASN295 PHE296 GLY297 TYR298 ASN299 GLN300 SER301 VAL302 HIS303 GLN304 ILE305 ASN306 ARG307 GLY308 ASP309 PHE310 SER311 LYS312 GLN313 ASP314 TRP315 GLU316 ALA317 GLN318 ILE319 ASP320 LYS321 GLU322 LEU323 SER324 GLN325 ASN326 GLN327 PRO328 VAL329 TYR330 TYR331 GLN332 GLY333 VAL334 GLY335 LYS336 VAL337 GLY338 GLY339 HIS340 ALA341 PHE342 VAL343 ILE344 ASP345 GLY346 ALA347 ASP348 GLY349 ARG350 ASN351 PHE352 TYR353 HIS354 VAL355 ASN356 TRP357 GLY358 TRP359 GLY360 GLY361 VAL362 SER363 ASP364 GLY365 PHE366 PHE367 ARG368 LEU369 ASP370 ALA371 LEU372 ASN373 PRO374 GLY385 PHE386 ASN387 GLY388 TYR389 GLN390 SER391 ALA392 VAL393 VAL394 GLY395 ILE396 LYS397 PRO398
Unit 3 PHE31 ALA32 ARG33 ASN34 GLU35 LYS36 GLU37 ALA38 LYS39 ASP40 SER41 ALA42 ILE43 THR44 PHE45 ILE46 GLN47 LYS48 ILE62 LYS63 LEU64 ASP65 LYS66 VAL67 ASN68 LEU69 GLY70 GLY71 GLU72 LEU73 SER74 GLY75 SER76 ASN77 MET78 TYR79 VAL80 TYR81 ASN82 ILE83 SER84 THR85 GLY86 GLY87 PHE88 VAL89 ILE90 VAL91 SER92 GLY93 ASP94 LYS95 ARG96 SER97 PRO98 GLU99 ILE100 LEU101 GLY102 TYR103 SER104 THR105 SER106 GLY107 SER108 PHE109 ASP110 ALA111 ASN112 GLY113 LYS114 GLU115 ASN116 ILE117 ALA118 SER119 PHE120 MET121 GLU122 SER123 TYR124 VAL125 GLU126 GLN127 ILE128 LYS129 GLU130 ASN131 LYS132 LYS133 LEU134 ASP135 THR136 THR137 TYR138 ALA139 GLN146 PRO147 VAL148 VAL149 LYS150 SER151 LEU152 LEU153 ASP154 SER155 LYS156 GLY157 ILE158 HIS159 TYR160 ASN161 GLN162 GLY163 ASN164 PRO165 TYR166 ASN167 LEU168 LEU169 THR170 PRO171 VAL172 ILE173 GLU174 LYS175 VAL176 LYS177 PRO178 GLY179 GLU180 GLN181 SER182 PHE183 VAL184 GLY185 GLN186 HIS187 ALA188 ALA189 THR190 GLY191 CYS192 VAL193 ALA194 THR195 ALA196 THR197 ALA198 GLN199 ILE200 MET201 LYS202 TYR203 HIS204 ASN205 TYR206 PRO207 ASN208 LYS209 GLY210 LEU211 LYS212 ASP213 TYR214 THR215 TYR216 THR217 LEU218 SER219 SER220 ASN221 ASN222 PRO223 TYR224 PHE225 ASN226 HIS227 PRO228 LYS229 ASN230 LEU231 PHE232 ALA233 ALA234 ILE235 SER236 THR237 ARG238 GLN239 TYR240 ASN241 TRP242 ASN243 ASN244 ILE245 LEU246 PRO247 THR248 TYR249 SER250 GLY251 ARG252 GLU253 SER254 ASN255 VAL256 GLN257 LYS258 MET259 ALA260 ILE261 SER262 GLU263 LEU264 MET265 ALA266 ASP267 VAL268 GLY269 ILE270 SER271 VAL272 ASP273 MET274 ASP275 TYR276 GLY277 PRO278 SER279 SER280 GLY281 SER282 ALA283 GLY284 SER285 SER286 ARG287 VAL288 GLN289 ARG290 ALA291 LEU292 LYS293 GLU294 ASN295 PHE296 GLY297 TYR298 ASN299 GLN300 SER301 VAL302 HIS303 GLN304 ILE305 ASN306 ARG307 GLY308 ASP309 PHE310 SER311 LYS312 GLN313 ASP314 TRP315 GLU316 ALA317 GLN318 ILE319 ASP320 LYS321 GLU322 LEU323 SER324 GLN325 ASN326 GLN327 PRO328 VAL329 TYR330 TYR331 GLN332 GLY333 VAL334 GLY335 LYS336 VAL337 GLY338 GLY339 HIS340 ALA341 PHE342 VAL343 ILE344 ASP345 GLY346 ALA347 ASP348 GLY349 ARG350 ASN351 PHE352 TYR353 HIS354 VAL355 ASN356 TRP357 GLY358 TRP359 GLY360 GLY361 VAL362 SER363 ASP364 GLY365 PHE366 PHE367 ARG368 LEU369 ASP370 ALA371 LEU372 ASN373 PRO374 GLY385 PHE386 ASN387 GLY388 TYR389 GLN390 SER391 ALA392 VAL393 VAL394 GLY395 ILE396 LYS397 PRO398
Unit 4 PHE31 ALA32 ARG33 ASN34 GLU35 LYS36 GLU37 ALA38 LYS39 ASP40 SER41 ALA42 ILE43 THR44 PHE45 ILE46 GLN47 LYS48 ILE62 LYS63 LEU64 ASP65 LYS66 VAL67 ASN68 LEU69 GLY70 GLY71 GLU72 LEU73 SER74 GLY75 SER76 ASN77 MET78 TYR79 VAL80 TYR81 ASN82 ILE83 SER84 THR85 GLY86 GLY87 PHE88 VAL89 ILE90 VAL91 SER92 GLY93 ASP94 LYS95 ARG96 SER97 PRO98 GLU99 ILE100 LEU101 GLY102 TYR103 SER104 THR105 SER106 GLY107 SER108 PHE109 ASP110 ALA111 ASN112 GLY113 LYS114 GLU115 ASN116 ILE117 ALA118 SER119 PHE120 MET121 GLU122 SER123 TYR124 VAL125 GLU126 GLN127 ILE128 LYS129 GLU130 ASN131 LYS132 LYS133 LEU134 ASP135 THR136 THR137 TYR138 ALA139 GLN146 PRO147 VAL148 VAL149 LYS150 SER151 LEU152 LEU153 ASP154 SER155 LYS156 GLY157 ILE158 HIS159 TYR160 ASN161 GLN162 GLY163 ASN164 PRO165 TYR166 ASN167 LEU168 LEU169 THR170 PRO171 VAL172 ILE173 GLU174 LYS175 VAL176 LYS177 PRO178 GLY179 GLU180 GLN181 SER182 PHE183 VAL184 GLY185 GLN186 HIS187 ALA188 ALA189 THR190 GLY191 CYS192 VAL193 ALA194 THR195 ALA196 THR197 ALA198 GLN199 ILE200 MET201 LYS202 TYR203 HIS204 ASN205 TYR206 PRO207 ASN208 LYS209 GLY210 LEU211 LYS212 ASP213 TYR214 THR215 TYR216 THR217 LEU218 SER219 SER220 ASN221 ASN222 PRO223 TYR224 PHE225 ASN226 HIS227 PRO228 LYS229 ASN230 LEU231 PHE232 ALA233 ALA234 ILE235 SER236 THR237 ARG238 GLN239 TYR240 ASN241 TRP242 ASN243 ASN244 ILE245 LEU246 PRO247 THR248 TYR249 SER250 GLY251 ARG252 GLU253 SER254 ASN255 VAL256 GLN257 LYS258 MET259 ALA260 ILE261 SER262 GLU263 LEU264 MET265 ALA266 ASP267 VAL268 GLY269 ILE270 SER271 VAL272 ASP273 MET274 ASP275 TYR276 GLY277 PRO278 SER279 SER280 GLY281 SER282 ALA283 GLY284 SER285 SER286 ARG287 VAL288 GLN289 ARG290 ALA291 LEU292 LYS293 GLU294 ASN295 PHE296 GLY297 TYR298 ASN299 GLN300 SER301 VAL302 HIS303 GLN304 ILE305 ASN306 ARG307 GLY308 ASP309 PHE310 SER311 LYS312 GLN313 ASP314 TRP315 GLU316 ALA317 GLN318 ILE319 ASP320 LYS321 GLU322 LEU323 SER324 GLN325 ASN326 GLN327 PRO328 VAL329 TYR330 TYR331 GLN332 GLY333 VAL334 GLY335 LYS336 VAL337 GLY338 GLY339 HIS340 ALA341 PHE342 VAL343 ILE344 ASP345 GLY346 ALA347 ASP348 GLY349 ARG350 ASN351 PHE352 TYR353 HIS354 VAL355 ASN356 TRP357 GLY358 TRP359 GLY360 GLY361 VAL362 SER363 ASP364 GLY365 PHE366 PHE367 ARG368 LEU369 ASP370 ALA371 LEU372 ASN373 PRO374 GLY385 PHE386 ASN387 GLY388 TYR389 GLN390 SER391 ALA392 VAL393 VAL394 GLY395 ILE396 LYS397 PRO398
Ligands
Unit 5 ZFB450
Unit 6 ZFB450
Unit 7 ZFB450
Unit 8 ZFB450
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany