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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF A PERTUSSIS TOXIN-SUGAR COMPLEX AS A MODEL RECEPTOR BINDING
Keywords TOXIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1PTO     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PERTUSSIS TOXIN (SUBUNIT S1)  A 224 1769 0
2  Protein   PERTUSSIS TOXIN  B 196 1522 0
3  Protein   PERTUSSIS TOXIN  C 196 1521 0
4  Protein   PERTUSSIS TOXIN (SUBUNIT S4)  D 110 838 0
5  Protein   PERTUSSIS TOXIN (SUBUNIT S4)  E 110 838 0
6  Protein   PERTUSSIS TOXIN (SUBUNIT S5)  F 98 764 0
7  Protein   PERTUSSIS TOXIN (SUBUNIT S1)  G 224 1769 0
8  Protein   PERTUSSIS TOXIN (SUBUNIT S2)  H 198 1536 0
9  Protein   PERTUSSIS TOXIN  I 196 1521 0
10  Protein   PERTUSSIS TOXIN (SUBUNIT S4)  J 110 838 0
11  Protein   PERTUSSIS TOXIN (SUBUNIT S4)  K 110 838 0
12  Protein   PERTUSSIS TOXIN (SUBUNIT S5)  L 98 764 0
13  Ligand    M 2 0 32
14  Ligand    N 2 0 32
15  Ligand    O 2 0 32
total       1876 14518 96

Proteins
Unit 1 ASP2 PRO3 PRO4 ALA5 THR6 VAL7 TYR8 ARG9 TYR10 ASP11 SER12 ARG13 PRO14 PRO15 GLU16 ASP17 VAL18 PHE19 GLN20 ASN21 GLY22 PHE23 THR24 ALA25 TRP26 GLY27 ASN28 ASN29 ASP30 ASN31 VAL32 LEU33 GLU34 HIS35 LEU36 THR37 GLY38 ARG39 SER40 CYS41 GLN42 VAL43 GLY44 SER45 SER46 ASN47 SER48 ALA49 PHE50 VAL51 SER52 THR53 SER54 SER55 SER56 ARG57 ARG58 TYR59 THR60 GLU61 VAL62 TYR63 LEU64 GLU65 HIS66 ARG67 MET68 GLN69 GLU70 ALA71 VAL72 GLU73 ALA74 GLU75 ARG76 ALA77 GLY78 ARG79 GLY80 THR81 GLY82 HIS83 PHE84 ILE85 GLY86 TYR87 ILE88 TYR89 GLU90 VAL91 ARG92 ALA93 ASP94 ASN95 ASN96 PHE97 TYR98 GLY99 ALA100 ALA101 SER102 SER103 TYR104 PHE105 GLU106 TYR107 VAL108 ASP109 THR110 TYR111 GLY112 ASP113 ASN114 ALA115 GLY116 ARG117 ILE118 LEU119 ALA120 GLY121 ALA122 LEU123 ALA124 THR125 TYR126 GLN127 SER128 GLU129 TYR130 LEU131 ALA132 HIS133 ARG134 ARG135 ILE136 PRO137 PRO138 GLU139 ASN140 ILE141 ARG142 ARG143 VAL144 THR145 ARG146 VAL147 TYR148 HIS149 ASN150 GLY151 ILE152 THR153 GLY154 GLU155 THR156 THR157 THR158 THR159 GLU160 TYR161 SER162 ASN163 ALA164 ARG165 TYR166 VAL167 SER168 GLN169 GLN170 THR171 ARG172 ALA173 ASN174 PRO175 ASN176 PRO177 TYR178 THR179 SER180 ARG181 ARG182 SER183 VAL184 ALA185 SER186 ILE187 VAL188 GLY189 THR190 LEU191 VAL192 ARG193 MET194 ALA195 PRO196 VAL197 VAL198 GLY199 ALA200 CYS201 MET202 ALA203 ARG204 GLN205 ALA206 GLU207 SER208 SER209 GLU210 GLU221 ALA222 MET223 VAL224 LEU225 VAL226 TYR227 TYR228 GLU229 SER230 ILE231 ALA232 TYR233 SER234 PHE235
Unit 2 GLY4 ILE5 VAL6 ILE7 PRO8 PRO9 GLN10 GLU11 GLN12 ILE13 THR14 GLN15 HIS16 GLY17 SER18 PRO19 TYR20 GLY21 ARG22 CYS23 ALA24 ASN25 LYS26 THR27 ARG28 ALA29 LEU30 THR31 VAL32 ALA33 GLU34 LEU35 ARG36 GLY37 SER38 GLY39 ASP40 LEU41 GLN42 GLU43 TYR44 LEU45 ARG46 HIS47 VAL48 THR49 ARG50 GLY51 TRP52 SER53 ILE54 PHE55 ALA56 LEU57 TYR58 ASP59 GLY60 THR61 TYR62 LEU63 GLY64 GLY65 GLU66 TYR67 GLY68 GLY69 VAL70 ILE71 LYS72 ASP73 GLY74 THR75 PRO76 GLY77 GLY78 ALA79 PHE80 ASP81 LEU82 LYS83 THR84 THR85 PHE86 CYS87 ILE88 MET89 THR90 THR91 ARG92 ASN93 THR94 GLY95 GLN96 PRO97 ALA98 THR99 ASP100 HIS101 TYR102 TYR103 SER104 ASN105 VAL106 THR107 ALA108 THR109 ARG110 LEU111 LEU112 SER113 SER114 THR115 ASN116 SER117 ARG118 LEU119 CYS120 ALA121 VAL122 PHE123 VAL124 ARG125 SER126 GLY127 GLN128 PRO129 VAL130 ILE131 GLY132 ALA133 CYS134 THR135 SER136 PRO137 TYR138 ASP139 GLY140 LYS141 TYR142 TRP143 SER144 MET145 TYR146 SER147 ARG148 LEU149 ARG150 LYS151 MET152 LEU153 TYR154 LEU155 ILE156 TYR157 VAL158 ALA159 GLY160 ILE161 SER162 VAL163 ARG164 VAL165 HIS166 VAL167 SER168 LYS169 GLU170 GLU171 GLN172 TYR173 TYR174 ASP175 TYR176 GLU177 ASP178 ALA179 THR180 PHE181 GLU182 THR183 TYR184 ALA185 LEU186 THR187 GLY188 ILE189 SER190 ILE191 CYS192 ASN193 PRO194 GLY195 SER196 SER197 LEU198 CYS199
Unit 3 GLY4 ILE5 VAL6 ILE7 PRO8 PRO9 LYS10 ALA11 LEU12 PHE13 THR14 GLN15 GLN16 GLY17 GLY18 ALA19 TYR20 GLY21 ARG22 CYS23 PRO24 ASN25 GLY26 THR27 ARG28 ALA29 LEU30 THR31 VAL32 ALA33 GLU34 LEU35 ARG36 GLY37 ASN38 ALA39 GLU40 LEU41 GLN42 THR43 TYR44 LEU45 ARG46 GLN47 ILE48 THR49 PRO50 GLY51 TRP52 SER53 ILE54 TYR55 GLY56 LEU57 TYR58 ASP59 GLY60 THR61 TYR62 LEU63 GLY64 GLN65 ALA66 TYR67 GLY68 GLY69 ILE70 ILE71 LYS72 ASP73 ALA74 PRO75 PRO76 GLY77 ALA78 GLY79 PHE80 ILE81 TYR82 ARG83 GLU84 THR85 PHE86 CYS87 ILE88 THR89 THR90 ILE91 TYR92 LYS93 THR94 GLY95 GLN96 PRO97 ALA98 ALA99 ASP100 HIS101 TYR102 TYR103 SER104 LYS105 VAL106 THR107 ALA108 THR109 ARG110 LEU111 LEU112 ALA113 SER114 THR115 ASN116 SER117 ARG118 LEU119 CYS120 ALA121 VAL122 PHE123 VAL124 ARG125 ASP126 GLY127 GLN128 SER129 VAL130 ILE131 GLY132 ALA133 CYS134 ALA135 SER136 PRO137 TYR138 GLU139 GLY140 ARG141 TYR142 ARG143 ASP144 MET145 TYR146 ASP147 ALA148 LEU149 ARG150 ARG151 LEU152 LEU153 TYR154 MET155 ILE156 TYR157 MET158 SER159 GLY160 LEU161 ALA162 VAL163 ARG164 VAL165 HIS166 VAL167 SER168 LYS169 GLU170 GLU171 GLN172 TYR173 TYR174 ASP175 TYR176 GLU177 ASP178 ALA179 THR180 PHE181 GLN182 THR183 TYR184 ALA185 LEU186 THR187 GLY188 ILE189 SER190 LEU191 CYS192 ASN193 PRO194 ALA195 ALA196 SER197 ILE198 CYS199
Unit 4 ASP1 VAL2 PRO3 TYR4 VAL5 LEU6 VAL7 LYS8 THR9 ASN10 MET11 VAL12 VAL13 THR14 SER15 VAL16 ALA17 MET18 LYS19 PRO20 TYR21 GLU22 VAL23 THR24 PRO25 THR26 ARG27 MET28 LEU29 VAL30 CYS31 GLY32 ILE33 ALA34 ALA35 LYS36 LEU37 GLY38 ALA39 ALA40 ALA41 SER42 SER43 PRO44 ASP45 ALA46 HIS47 VAL48 PRO49 PHE50 CYS51 PHE52 GLY53 LYS54 ASP55 LEU56 LYS57 ARG58 PRO59 GLY60 SER61 SER62 PRO63 MET64 GLU65 VAL66 MET67 LEU68 ARG69 ALA70 VAL71 PHE72 MET73 GLN74 GLN75 ARG76 PRO77 LEU78 ARG79 MET80 PHE81 LEU82 GLY83 PRO84 LYS85 GLN86 LEU87 THR88 PHE89 GLU90 GLY91 LYS92 PRO93 ALA94 LEU95 GLU96 LEU97 ILE98 ARG99 MET100 VAL101 GLU102 CYS103 SER104 GLY105 LYS106 GLN107 ASP108 CYS109 PRO110
Unit 5 ASP1 VAL2 PRO3 TYR4 VAL5 LEU6 VAL7 LYS8 THR9 ASN10 MET11 VAL12 VAL13 THR14 SER15 VAL16 ALA17 MET18 LYS19 PRO20 TYR21 GLU22 VAL23 THR24 PRO25 THR26 ARG27 MET28 LEU29 VAL30 CYS31 GLY32 ILE33 ALA34 ALA35 LYS36 LEU37 GLY38 ALA39 ALA40 ALA41 SER42 SER43 PRO44 ASP45 ALA46 HIS47 VAL48 PRO49 PHE50 CYS51 PHE52 GLY53 LYS54 ASP55 LEU56 LYS57 ARG58 PRO59 GLY60 SER61 SER62 PRO63 MET64 GLU65 VAL66 MET67 LEU68 ARG69 ALA70 VAL71 PHE72 MET73 GLN74 GLN75 ARG76 PRO77 LEU78 ARG79 MET80 PHE81 LEU82 GLY83 PRO84 LYS85 GLN86 LEU87 THR88 PHE89 GLU90 GLY91 LYS92 PRO93 ALA94 LEU95 GLU96 LEU97 ILE98 ARG99 MET100 VAL101 GLU102 CYS103 SER104 GLY105 LYS106 GLN107 ASP108 CYS109 PRO110
Unit 6 LEU2 PRO3 THR4 HIS5 LEU6 TYR7 LYS8 ASN9 PHE10 THR11 VAL12 GLN13 GLU14 LEU15 ALA16 LEU17 LYS18 LEU19 LYS20 GLY21 LYS22 ASN23 GLN24 GLU25 PHE26 CYS27 LEU28 THR29 ALA30 PHE31 MET32 SER33 GLY34 ARG35 SER36 LEU37 VAL38 ARG39 ALA40 CYS41 LEU42 SER43 ASP44 ALA45 GLY46 HIS47 GLU48 HIS49 ASP50 THR51 TRP52 PHE53 ASP54 THR55 MET56 LEU57 GLY58 PHE59 ALA60 ILE61 SER62 ALA63 TYR64 ALA65 LEU66 LYS67 SER68 ARG69 ILE70 ALA71 LEU72 THR73 VAL74 GLU75 ASP76 SER77 PRO78 TYR79 PRO80 GLY81 THR82 PRO83 GLY84 ASP85 LEU86 LEU87 GLU88 LEU89 GLN90 ILE91 CYS92 PRO93 LEU94 ASN95 GLY96 TYR97 CYS98 GLU99
Unit 7 ASP2 PRO3 PRO4 ALA5 THR6 VAL7 TYR8 ARG9 TYR10 ASP11 SER12 ARG13 PRO14 PRO15 GLU16 ASP17 VAL18 PHE19 GLN20 ASN21 GLY22 PHE23 THR24 ALA25 TRP26 GLY27 ASN28 ASN29 ASP30 ASN31 VAL32 LEU33 GLU34 HIS35 LEU36 THR37 GLY38 ARG39 SER40 CYS41 GLN42 VAL43 GLY44 SER45 SER46 ASN47 SER48 ALA49 PHE50 VAL51 SER52 THR53 SER54 SER55 SER56 ARG57 ARG58 TYR59 THR60 GLU61 VAL62 TYR63 LEU64 GLU65 HIS66 ARG67 MET68 GLN69 GLU70 ALA71 VAL72 GLU73 ALA74 GLU75 ARG76 ALA77 GLY78 ARG79 GLY80 THR81 GLY82 HIS83 PHE84 ILE85 GLY86 TYR87 ILE88 TYR89 GLU90 VAL91 ARG92 ALA93 ASP94 ASN95 ASN96 PHE97 TYR98 GLY99 ALA100 ALA101 SER102 SER103 TYR104 PHE105 GLU106 TYR107 VAL108 ASP109 THR110 TYR111 GLY112 ASP113 ASN114 ALA115 GLY116 ARG117 ILE118 LEU119 ALA120 GLY121 ALA122 LEU123 ALA124 THR125 TYR126 GLN127 SER128 GLU129 TYR130 LEU131 ALA132 HIS133 ARG134 ARG135 ILE136 PRO137 PRO138 GLU139 ASN140 ILE141 ARG142 ARG143 VAL144 THR145 ARG146 VAL147 TYR148 HIS149 ASN150 GLY151 ILE152 THR153 GLY154 GLU155 THR156 THR157 THR158 THR159 GLU160 TYR161 SER162 ASN163 ALA164 ARG165 TYR166 VAL167 SER168 GLN169 GLN170 THR171 ARG172 ALA173 ASN174 PRO175 ASN176 PRO177 TYR178 THR179 SER180 ARG181 ARG182 SER183 VAL184 ALA185 SER186 ILE187 VAL188 GLY189 THR190 LEU191 VAL192 ARG193 MET194 ALA195 PRO196 VAL197 VAL198 GLY199 ALA200 CYS201 MET202 ALA203 ARG204 GLN205 ALA206 GLU207 SER208 SER209 GLU210 GLU221 ALA222 MET223 VAL224 LEU225 VAL226 TYR227 TYR228 GLU229 SER230 ILE231 ALA232 TYR233 SER234 PHE235
Unit 8 THR2 PRO3 GLY4 ILE5 VAL6 ILE7 PRO8 PRO9 GLN10 GLU11 GLN12 ILE13 THR14 GLN15 HIS16 GLY17 SER18 PRO19 TYR20 GLY21 ARG22 CYS23 ALA24 ASN25 LYS26 THR27 ARG28 ALA29 LEU30 THR31 VAL32 ALA33 GLU34 LEU35 ARG36 GLY37 SER38 GLY39 ASP40 LEU41 GLN42 GLU43 TYR44 LEU45 ARG46 HIS47 VAL48 THR49 ARG50 GLY51 TRP52 SER53 ILE54 PHE55 ALA56 LEU57 TYR58 ASP59 GLY60 THR61 TYR62 LEU63 GLY64 GLY65 GLU66 TYR67 GLY68 GLY69 VAL70 ILE71 LYS72 ASP73 GLY74 THR75 PRO76 GLY77 GLY78 ALA79 PHE80 ASP81 LEU82 LYS83 THR84 THR85 PHE86 CYS87 ILE88 MET89 THR90 THR91 ARG92 ASN93 THR94 GLY95 GLN96 PRO97 ALA98 THR99 ASP100 HIS101 TYR102 TYR103 SER104 ASN105 VAL106 THR107 ALA108 THR109 ARG110 LEU111 LEU112 SER113 SER114 THR115 ASN116 SER117 ARG118 LEU119 CYS120 ALA121 VAL122 PHE123 VAL124 ARG125 SER126 GLY127 GLN128 PRO129 VAL130 ILE131 GLY132 ALA133 CYS134 THR135 SER136 PRO137 TYR138 ASP139 GLY140 LYS141 TYR142 TRP143 SER144 MET145 TYR146 SER147 ARG148 LEU149 ARG150 LYS151 MET152 LEU153 TYR154 LEU155 ILE156 TYR157 VAL158 ALA159 GLY160 ILE161 SER162 VAL163 ARG164 VAL165 HIS166 VAL167 SER168 LYS169 GLU170 GLU171 GLN172 TYR173 TYR174 ASP175 TYR176 GLU177 ASP178 ALA179 THR180 PHE181 GLU182 THR183 TYR184 ALA185 LEU186 THR187 GLY188 ILE189 SER190 ILE191 CYS192 ASN193 PRO194 GLY195 SER196 SER197 LEU198 CYS199
Unit 9 GLY4 ILE5 VAL6 ILE7 PRO8 PRO9 LYS10 ALA11 LEU12 PHE13 THR14 GLN15 GLN16 GLY17 GLY18 ALA19 TYR20 GLY21 ARG22 CYS23 PRO24 ASN25 GLY26 THR27 ARG28 ALA29 LEU30 THR31 VAL32 ALA33 GLU34 LEU35 ARG36 GLY37 ASN38 ALA39 GLU40 LEU41 GLN42 THR43 TYR44 LEU45 ARG46 GLN47 ILE48 THR49 PRO50 GLY51 TRP52 SER53 ILE54 TYR55 GLY56 LEU57 TYR58 ASP59 GLY60 THR61 TYR62 LEU63 GLY64 GLN65 ALA66 TYR67 GLY68 GLY69 ILE70 ILE71 LYS72 ASP73 ALA74 PRO75 PRO76 GLY77 ALA78 GLY79 PHE80 ILE81 TYR82 ARG83 GLU84 THR85 PHE86 CYS87 ILE88 THR89 THR90 ILE91 TYR92 LYS93 THR94 GLY95 GLN96 PRO97 ALA98 ALA99 ASP100 HIS101 TYR102 TYR103 SER104 LYS105 VAL106 THR107 ALA108 THR109 ARG110 LEU111 LEU112 ALA113 SER114 THR115 ASN116 SER117 ARG118 LEU119 CYS120 ALA121 VAL122 PHE123 VAL124 ARG125 ASP126 GLY127 GLN128 SER129 VAL130 ILE131 GLY132 ALA133 CYS134 ALA135 SER136 PRO137 TYR138 GLU139 GLY140 ARG141 TYR142 ARG143 ASP144 MET145 TYR146 ASP147 ALA148 LEU149 ARG150 ARG151 LEU152 LEU153 TYR154 MET155 ILE156 TYR157 MET158 SER159 GLY160 LEU161 ALA162 VAL163 ARG164 VAL165 HIS166 VAL167 SER168 LYS169 GLU170 GLU171 GLN172 TYR173 TYR174 ASP175 TYR176 GLU177 ASP178 ALA179 THR180 PHE181 GLN182 THR183 TYR184 ALA185 LEU186 THR187 GLY188 ILE189 SER190 LEU191 CYS192 ASN193 PRO194 ALA195 ALA196 SER197 ILE198 CYS199
Unit 10 ASP1 VAL2 PRO3 TYR4 VAL5 LEU6 VAL7 LYS8 THR9 ASN10 MET11 VAL12 VAL13 THR14 SER15 VAL16 ALA17 MET18 LYS19 PRO20 TYR21 GLU22 VAL23 THR24 PRO25 THR26 ARG27 MET28 LEU29 VAL30 CYS31 GLY32 ILE33 ALA34 ALA35 LYS36 LEU37 GLY38 ALA39 ALA40 ALA41 SER42 SER43 PRO44 ASP45 ALA46 HIS47 VAL48 PRO49 PHE50 CYS51 PHE52 GLY53 LYS54 ASP55 LEU56 LYS57 ARG58 PRO59 GLY60 SER61 SER62 PRO63 MET64 GLU65 VAL66 MET67 LEU68 ARG69 ALA70 VAL71 PHE72 MET73 GLN74 GLN75 ARG76 PRO77 LEU78 ARG79 MET80 PHE81 LEU82 GLY83 PRO84 LYS85 GLN86 LEU87 THR88 PHE89 GLU90 GLY91 LYS92 PRO93 ALA94 LEU95 GLU96 LEU97 ILE98 ARG99 MET100 VAL101 GLU102 CYS103 SER104 GLY105 LYS106 GLN107 ASP108 CYS109 PRO110
Unit 11 ASP1 VAL2 PRO3 TYR4 VAL5 LEU6 VAL7 LYS8 THR9 ASN10 MET11 VAL12 VAL13 THR14 SER15 VAL16 ALA17 MET18 LYS19 PRO20 TYR21 GLU22 VAL23 THR24 PRO25 THR26 ARG27 MET28 LEU29 VAL30 CYS31 GLY32 ILE33 ALA34 ALA35 LYS36 LEU37 GLY38 ALA39 ALA40 ALA41 SER42 SER43 PRO44 ASP45 ALA46 HIS47 VAL48 PRO49 PHE50 CYS51 PHE52 GLY53 LYS54 ASP55 LEU56 LYS57 ARG58 PRO59 GLY60 SER61 SER62 PRO63 MET64 GLU65 VAL66 MET67 LEU68 ARG69 ALA70 VAL71 PHE72 MET73 GLN74 GLN75 ARG76 PRO77 LEU78 ARG79 MET80 PHE81 LEU82 GLY83 PRO84 LYS85 GLN86 LEU87 THR88 PHE89 GLU90 GLY91 LYS92 PRO93 ALA94 LEU95 GLU96 LEU97 ILE98 ARG99 MET100 VAL101 GLU102 CYS103 SER104 GLY105 LYS106 GLN107 ASP108 CYS109 PRO110
Unit 12 LEU2 PRO3 THR4 HIS5 LEU6 TYR7 LYS8 ASN9 PHE10 THR11 VAL12 GLN13 GLU14 LEU15 ALA16 LEU17 LYS18 LEU19 LYS20 GLY21 LYS22 ASN23 GLN24 GLU25 PHE26 CYS27 LEU28 THR29 ALA30 PHE31 MET32 SER33 GLY34 ARG35 SER36 LEU37 VAL38 ARG39 ALA40 CYS41 LEU42 SER43 ASP44 ALA45 GLY46 HIS47 GLU48 HIS49 ASP50 THR51 TRP52 PHE53 ASP54 THR55 MET56 LEU57 GLY58 PHE59 ALA60 ILE61 SER62 ALA63 TYR64 ALA65 LEU66 LYS67 SER68 ARG69 ILE70 ALA71 LEU72 THR73 VAL74 GLU75 ASP76 SER77 PRO78 TYR79 PRO80 GLY81 THR82 PRO83 GLY84 ASP85 LEU86 LEU87 GLU88 LEU89 GLN90 ILE91 CYS92 PRO93 LEU94 ASN95 GLY96 TYR97 CYS98 GLU99

Ligands
Unit 13 GAL1 SIA2
Unit 14 GAL1 SIA2
Unit 15 GAL1 SIA2

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany