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Sequence, Chains, Asymmetric and Biological Units

Title COORDINATES OF S12, L11 PROTEINS AND E-SITE TRNA FROM 70S CRYSTAL STRUCTURE SEPARATELY FITTED INTO THE CRYO-EM MAP OF E.COLI 70S.EF-G.GDPNP COMPLEX. THE ATOMIC COORDINATES ORIGINALLY FROM THE E-SITE TRNA WERE FITTED IN THE POSITION OF THE HYBRID P/E-SITE TRNA.
Keywords RIBOSOMAL PROTEIN, TRNA BINDING PROTEIN, TRNA, RNA BINDING PROTEIN/RNA COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1PN8     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    D 68 68 0
2  Protein   30S RIBOSOMAL PROTEIN S12  O 124 124 0
3  Protein   50S RIBOSOMAL PROTEIN L11  L 133 133 0
total       325 325 0

Proteins
Unit 2 PRO5 THR6 ILE7 ASN8 GLN9 LEU10 VAL11 ARG12 LYS13 GLY14 ARG15 GLU16 LYS17 VAL18 ARG19 LYS20 LYS21 SER22 LYS23 VAL24 PRO25 ALA26 LEU27 LYS28 GLY29 ALA30 PRO31 PHE32 ARG33 ARG34 GLY35 VAL36 CYS37 THR38 VAL39 VAL40 ARG41 THR42 VAL43 THR44 PRO45 LYS46 LYS47 PRO48 ASN49 SER50 ALA51 LEU52 ARG53 LYS54 VAL55 ALA56 LYS57 VAL58 ARG59 LEU60 THR61 SER62 GLY63 TYR64 GLU65 VAL66 THR67 ALA68 TYR69 ILE70 PRO71 GLY72 GLU73 GLY74 HIS75 ASN76 LEU77 GLN78 GLU79 HIS80 SER81 VAL82 VAL83 LEU84 ILE85 ARG86 GLY87 GLY88 ARG89 VAL90 LYS91 ASP92 LEU93 PRO94 GLY95 VAL96 ARG97 TYR98 HIS99 ILE100 VAL101 ARG102 GLY103 VAL104 TYR105 ASP106 ALA107 ALA108 GLY109 VAL110 LYS111 ASP112 ARG113 LYS114 LYS115 SER116 ARG117 SER118 LYS119 TYR120 GLY121 THR122 LYS123 LYS124 PRO125 LYS126 GLU127 ALA128
Unit 3 GLN8 ILE9 LYS10 LEU11 GLN12 LEU13 PRO14 ALA15 GLY16 LYS17 ALA18 THR19 PRO20 ALA21 PRO22 PRO23 VAL24 GLY25 PRO26 ALA27 LEU28 GLY29 GLN30 HIS31 GLY32 VAL33 ASN34 ILE35 MET36 GLU37 PHE38 CYS39 LYS40 ARG41 PHE42 ASN43 ALA44 GLU45 THR46 ALA47 ASP48 LYS49 ALA50 GLY51 MET52 ILE53 LEU54 PRO55 VAL56 VAL57 ILE58 THR59 VAL60 TYR61 GLU62 ASP63 LYS64 SER65 PHE66 THR67 PHE68 ILE69 ILE70 LYS71 THR72 PRO73 PRO74 ALA75 SER76 PHE77 LEU78 LEU79 LYS80 LYS81 ALA82 ALA83 GLY84 ILE85 GLU86 LYS87 GLY88 SER89 SER90 GLU91 PRO92 LYS93 ARG94 LYS95 ILE96 VAL97 GLY98 LYS99 VAL100 THR101 ARG102 LYS103 GLN104 ILE105 GLU106 GLU107 ILE108 ALA109 LYS110 THR111 LYS112 MET113 PRO114 ASP115 LEU116 ASN117 ALA118 ASN119 SER120 LEU121 GLU122 ALA123 ALA124 MET125 LYS126 ILE127 ILE128 GLU129 GLY130 THR131 ALA132 LYS133 SER134 MET135 GLY136 ILE137 GLU138 VAL139 VAL140

Nucleic acids
Unit 1 U1 C2 C3 G4 U5 G6 A7 A9 A10 C11 A12 A13 A14 G15 C16 G18 G19 A22 U23 G24 U25 A26 C27 C28 G29 G30 A31 U32 U33 U34 U35 U36 A37 U38 U39 C40 C41 G42 G43 C44 U45 A46 U48 G50 G51 G52 G53 C56 A57 A58 U59 U60 C61 C62 C63 C64 G65 U66 C67 G68 C69 G70 G71 A72 G73 C74 C75 A76

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany