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Sequence, Chains, Asymmetric and Biological Units

Title SOLUTION STRUCTURE OF HCV IRES DOMAIN II (MINIMIZED AVERAGE STRUCTURE)
Keywords RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE, TRNA, LOOP E MOTIF, HAIRPIN LOOP
Experiment NMR
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1P5P     released     available     available     Quaternary Structure Server  
NDB   1P5P                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 77 2468 0
total       77 2468 0

Nucleic acids
Unit 1 G1 G2 C3 U4 G5 U6 G7 A8 G9 G10 A11 A12 C13 U14 A15 C16 U17 G18 U19 C20 U21 U22 C23 A24 C25 G26 C27 A28 G29 A30 A31 A32 G33 C34 G35 U36 C37 U38 A39 G40 C41 C42 A43 U44 G45 G46 C47 G48 U49 U50 A51 G52 U53 A54 U55 G56 A57 G58 U59 G60 U61 C62 G63 U64 G65 C66 A67 G68 C69 C70 U71 C72 C73 A74 G75 C76 C77

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany