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Title | STRUCTURE OF AN MRNA CAPPING ENZYME BOUND TO THE PHOSPHORYLA CARBOXYL-TERMINAL DOMAIN OF RNA POLYMERASE II | |
Keywords | GUANYLYLTRANSFERASE, CANDIDA ALBICANS, RNA POLYMERASE II, TRANSCRIPTION, CAPPING, CTD, MRNA, TRANSFERASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1P16 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | MRNA CAPPING ENZYME ALPHA SUBUNIT | A | 390 | 3152 | 56 |
2 | Protein | MRNA CAPPING ENZYME ALPHA SUBUNIT | B | 377 | 3043 | 56 |
3 | Protein | PHOSPHORYLATED PEPTIDE FROM C-TERMINAL OF RNA POL II | C | 9 | 52 | 20 |
4 | Protein | PHOSPHORYLATED PEPTIDE FROM C-TERMINAL OF RNA POL II | D | 17 | 104 | 30 |
5 | RNA | A | 4 | 0 | 38 | |
6 | Ligand | MRNA CAPPING ENZYME ALPHA SUBUNIT | B | 1 | 0 | 32 |
7 | Water | 433 | 0 | 433 | ||
total | 1231 | 6351 | 665 |
Unit 1 | MSE1 VAL2 GLN3 LEU4 GLU5 GLU6 ARG7 GLU8 ILE9 PRO10 VAL11 ILE12 PRO13 GLY14 ASN15 LYS16 LEU17 ASP18 GLU19 GLU20 GLU21 THR22 LYS23 GLU24 LEU25 ARG26 LEU27 MSE28 VAL29 ALA30 GLU31 LEU32 LEU33 GLY34 ARG35 ARG36 ASN37 THR38 GLY39 PHE40 PRO41 GLY42 SER43 GLN44 PRO45 VAL46 SER47 PHE48 GLU49 ARG50 ARG51 HIS52 LEU53 GLU54 GLU55 THR56 LEU57 MSE58 GLN59 LYS60 ASP61 TYR62 PHE63 VAL64 CYS65 GLU66 LYS67 THR68 ASP69 GLY70 LEU71 ARG72 CYS73 LEU74 LEU75 PHE76 LEU77 ILE78 ASN79 ASP80 PRO81 ASP82 LYS83 GLY84 GLU85 GLY86 VAL87 PHE88 LEU89 VAL90 THR91 ARG92 GLU93 ASN94 ASP95 TYR96 TYR97 PHE98 ILE99 PRO100 ASN101 ILE102 HIS103 PHE104 PRO105 LEU106 SER107 VAL108 ASN109 GLU110 THR111 ARG112 GLU113 LYS114 PRO115 THR116 TYR117 HIS118 HIS119 GLY120 THR121 LEU122 LEU123 ASP124 GLY125 GLU126 LEU127 VAL128 LEU129 GLU130 ASN131 ARG132 ASN133 VAL134 SER135 GLU136 PRO137 VAL138 LEU139 ARG140 TYR141 VAL142 ILE143 PHE144 ASP145 ALA146 LEU147 ALA148 ILE149 HIS150 GLY151 LYS152 CYS153 ILE154 ILE155 ASP156 ARG157 PRO158 LEU159 PRO160 LYS161 ARG162 LEU163 GLY164 TYR165 ILE166 THR167 GLU168 ASN169 VAL170 MSE171 LYS172 PRO173 PHE174 ASP175 ASN176 PHE177 LYS178 LYS179 HIS180 ASN181 PRO182 ASP183 ILE184 VAL185 ASN186 SER187 PRO188 GLU189 PHE190 PRO191 PHE192 LYS193 VAL194 GLY195 PHE196 LYS197 THR198 MSE199 LEU200 THR201 SER202 TYR203 HIS204 ALA205 ASP206 ASP207 VAL208 LEU209 SER210 LYS211 MSE212 ASP213 LYS214 LEU215 PHE216 HIS217 ALA218 SER219 ASP220 GLY221 LEU222 ILE223 TYR224 THR225 CYS226 ALA227 GLU228 THR229 PRO230 TYR231 VAL232 PHE233 GLY234 THR235 ASP236 GLN237 THR238 LEU239 LEU240 LYS241 TRP242 LYS243 PRO244 ALA245 GLU246 GLU247 ASN248 THR249 VAL250 ASP251 PHE252 GLN253 LEU254 GLU255 PHE256 VAL257 PHE258 ASN259 GLU260 VAL261 GLN262 ASP263 PRO264 ASP265 LEU266 ASP267 GLU268 ARG269 ASP270 PRO271 THR272 SER273 THR274 TYR275 LEU276 ASP277 TYR278 ASP279 ALA280 LYS281 PRO282 ASN283 LEU284 ILE285 LYS286 LEU287 ARG288 VAL289 TRP290 GLN291 GLY292 SER293 ASN294 VAL295 HIS296 THR297 ASP298 PHE299 ALA300 LYS301 LEU302 ASP303 LEU304 SER305 ASP306 ASP307 ASP308 TRP309 GLU310 ARG311 LEU312 LYS313 ALA314 LEU315 GLU316 GLN317 PRO318 LEU319 GLN320 GLY321 ARG322 ILE323 ALA324 GLU325 CYS326 ARG327 GLN328 SER329 THR330 THR331 LYS332 LYS333 GLY334 TYR335 TRP336 GLU337 MSE338 LEU339 ARG340 PHE341 ARG342 ASN343 ASP344 LYS345 SER346 ASN347 GLY348 ASN349 HIS350 ILE351 SER352 VAL353 VAL354 GLU355 LYS356 ILE357 LEU358 VAL359 SER360 ILE361 LYS362 ASP363 GLY364 VAL365 LYS366 GLU367 LYS368 GLU369 VAL370 ILE371 GLU372 TRP373 CYS374 PRO375 LYS376 ILE377 SER378 ARG379 ALA380 TRP381 LYS382 LYS383 ARG384 GLU385 ASN386 ASP387 ARG388 ARG389 GLN390 |
Unit 2 | MSE1 VAL2 GLN3 LEU4 GLU5 GLU6 ARG7 GLU8 ILE9 PRO10 VAL11 ILE12 PRO13 GLY14 ASN15 LYS16 LEU17 ASP18 GLU19 GLU20 GLU21 THR22 LYS23 GLU24 LEU25 ARG26 LEU27 MSE28 VAL29 ALA30 GLU31 LEU32 LEU33 GLY34 ARG35 ARG36 ASN37 THR38 GLY39 PHE40 PRO41 GLY42 SER43 GLN44 PRO45 VAL46 SER47 PHE48 GLU49 ARG50 ARG51 HIS52 LEU53 GLU54 GLU55 THR56 LEU57 MSE58 GLN59 LYS60 ASP61 TYR62 PHE63 VAL64 CYS65 GLU66 LYS67 THR68 ASP69 GLY70 LEU71 ARG72 CYS73 LEU74 LEU75 PHE76 LEU77 ILE78 ASN79 ASP80 PRO81 ASP82 LYS83 GLY84 GLU85 GLY86 VAL87 PHE88 LEU89 VAL90 THR91 ARG92 GLU93 ASN94 ASP95 TYR96 TYR97 PHE98 ILE99 PRO100 ASN101 ILE102 HIS103 PHE104 PRO105 LEU106 SER107 VAL108 ASN109 GLU110 THR111 ARG112 GLU113 LYS114 PRO115 THR116 TYR117 HIS118 HIS119 GLY120 THR121 LEU122 LEU123 ASP124 GLY125 GLU126 LEU127 VAL128 LEU129 GLU130 ASN131 ARG132 ASN133 VAL134 SER135 GLU136 PRO137 VAL138 LEU139 ARG140 TYR141 VAL142 ILE143 PHE144 ASP145 ALA146 LEU147 ALA148 ILE149 HIS150 GLY151 LYS152 CYS153 ILE154 ILE155 ASP156 ARG157 PRO158 LEU159 PRO160 LYS161 ARG162 LEU163 GLY164 TYR165 ILE166 THR167 GLU168 ASN169 VAL170 MSE171 LYS172 PRO173 PHE174 ASP175 ASN176 PHE177 LYS178 LYS179 HIS180 ASN181 PRO182 ASP183 ILE184 VAL185 ASN186 SER187 PRO188 GLU189 PHE190 PRO191 PHE192 LYS193 VAL194 GLY195 PHE196 LYS197 THR198 MSE199 LEU200 THR201 SER202 TYR203 HIS204 ALA205 ASP206 ASP207 VAL208 LEU209 SER210 LYS211 MSE212 ASP213 LYS214 LEU215 PHE216 HIS217 ALA218 SER219 ASP220 GLY221 LEU222 ILE223 TYR224 THR225 CYS226 ALA227 GLU228 THR229 PRO230 TYR231 VAL232 PHE233 GLY234 THR235 ASP236 GLN237 THR238 LEU239 LEU240 LYS241 TRP242 LYS243 PRO244 ALA245 GLU246 GLU247 ASN248 THR249 VAL250 ASP251 PHE252 GLN253 LEU254 GLU255 PHE256 VAL257 PHE258 ASN259 GLU260 VAL261 GLN262 TYR275 LEU276 ASP277 TYR278 ASP279 ALA280 LYS281 PRO282 ASN283 LEU284 ILE285 LYS286 LEU287 ARG288 VAL289 TRP290 GLN291 GLY292 SER293 ASN294 VAL295 HIS296 THR297 ASP298 PHE299 ALA300 LYS301 LEU302 ASP303 LEU304 SER305 ASP306 ASP307 ASP308 TRP309 GLU310 ARG311 LEU312 LYS313 ALA314 LEU315 GLU316 GLN317 PRO318 LEU319 GLN320 GLY321 ARG322 ILE323 ALA324 GLU325 CYS326 ARG327 GLN328 SER329 THR330 THR331 LYS332 LYS333 GLY334 TYR335 TRP336 GLU337 MSE338 LEU339 ARG340 PHE341 ARG342 ASN343 ASP344 LYS345 SER346 ASN347 GLY348 ASN349 HIS350 ILE351 SER352 VAL353 VAL354 GLU355 LYS356 ILE357 LEU358 VAL359 SER360 ILE361 LYS362 ASP363 GLY364 VAL365 LYS366 GLU367 LYS368 GLU369 VAL370 ILE371 GLU372 TRP373 CYS374 PRO375 LYS376 ILE377 SER378 ARG379 ALA380 TRP381 LYS382 LYS383 ARG384 GLU385 ASN386 ASP387 ARG388 ARG389 |
Unit 3 | THR104 SEP105 PRO106 SER107 TYR108 SER109 PRO110 THR111 SEP112 |
Unit 4 | THR104 SEP105 PRO106 SER107 TYR108 SER109 PRO110 THR111 SEP112 PRO113 SER114 TYR115 SER116 PRO117 THR118 SEP119 PRO120 |
Unit 5 | G1167 PO47001 PO47002 PO47005 |
Unit 6 | GTP5001 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |