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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTALLOGRAPHIC STRUCTURE OF A PLP-DEPENDENT ORNITHINE DECA FROM LACTOBACILLUS 30A TO 3.1 ANGSTROMS RESOLUTION
Keywords CARBOXY-LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1ORD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ORNITHINE DECARBOXYLASE  A 730 7105 0
2  Protein   ORNITHINE DECARBOXYLASE  B 730 7105 0
3  Ligand   ORNITHINE DECARBOXYLASE  A 1 0 15
4  Ligand   ORNITHINE DECARBOXYLASE  B 1 0 15
5 Water     107 0 321
total       1569 14210 351
Proteins
Unit 1 SER1 SER2 SER3 LEU4 LYS5 ILE6 ALA7 SER8 THR9 GLN10 GLU11 ALA12 ARG13 GLN14 TYR15 PHE16 ASP17 THR18 ASP19 ARG20 VAL21 VAL22 VAL23 ASP24 ALA25 VAL26 GLY27 SER28 ASP29 PHE30 THR31 ASP32 VAL33 GLY34 ALA35 VAL36 ILE37 ALA38 MET39 ASP40 TYR41 GLU42 THR43 ASP44 VAL45 ILE46 ASP47 ALA48 ALA49 ASP50 ALA51 THR52 LYS53 PHE54 GLY55 ILE56 PRO57 VAL58 PHE59 ALA60 VAL61 THR62 LYS63 ASP64 ALA65 GLN66 ALA67 ILE68 SER69 ALA70 ASP71 GLU72 LEU73 LYS74 LYS75 ILE76 PHE77 HIS78 ILE79 ILE80 ASP81 LEU82 GLU83 ASN84 LYS85 PHE86 ASP87 ALA88 THR89 VAL90 ASN91 ALA92 ARG93 GLU94 ILE95 GLU96 THR97 ALA98 VAL99 ASN100 ASN101 TYR102 GLU103 ASP104 SER105 ILE106 LEU107 PRO108 PRO109 PHE110 PHE111 LYS112 SER113 LEU114 LYS115 GLU116 TYR117 VAL118 SER119 ARG120 GLY121 LEU122 ILE123 GLN124 PHE125 ASP126 CYS127 PRO128 GLY129 HIS130 GLN131 GLY132 GLY133 GLN134 TYR135 TYR136 ARG137 LYS138 HIS139 PRO140 ALA141 GLY142 ARG143 GLU144 PHE145 TYR146 ASP147 PHE148 PHE149 GLY150 GLU151 THR152 VAL153 PHE154 ARG155 ALA156 ASP157 LEU158 CYS159 ASN160 ALA161 ASP162 VAL163 ALA164 LEU165 GLY166 ASP167 LEU168 LEU169 ILE170 HIS171 GLU172 GLY173 PRO174 ALA175 VAL176 ALA177 ALA178 GLU179 LYS180 HIS181 ALA182 ALA183 ARG184 VAL185 TYR186 ASN187 ALA188 ASP189 LYS190 THR191 TYR192 PHE193 VAL194 LEU195 GLY196 GLY197 SER198 SER199 ASN200 ALA201 ASN202 ASN203 THR204 VAL205 THR206 SER207 ALA208 LEU209 VAL210 SER211 ASN212 GLY213 ASP214 LEU215 VAL216 LEU217 PHE218 ASP219 ARG220 ASN221 ASN222 HIS223 LYS224 SER225 VAL226 TYR227 ASN228 SER229 ALA230 LEU231 ALA232 MET233 ALA234 GLY235 GLY236 ARG237 PRO238 VAL239 TYR240 LEU241 GLN242 THR243 ASN244 ARG245 ASN246 PRO247 TYR248 GLY249 PHE250 ILE251 GLY252 GLY253 ILE254 TYR255 ASP256 SER257 ASP258 PHE259 ASP260 GLU261 LYS262 LYS263 ILE264 ARG265 GLU266 LEU267 ALA268 ALA269 LYS270 VAL271 ASP272 PRO273 GLU274 ARG275 ALA276 LYS277 TRP278 LYS279 ARG280 PRO281 PHE282 ARG283 LEU284 ALA285 VAL286 ILE287 GLN288 LEU289 GLY290 THR291 TYR292 ASP293 GLY294 THR295 ILE296 TYR297 ASN298 ALA299 HIS300 GLU301 VAL302 VAL303 LYS304 ARG305 ILE306 GLY307 HIS308 LEU309 CYS310 ASP311 TYR312 ILE313 GLU314 PHE315 ASP316 SER317 ALA318 TRP319 VAL320 GLY321 TYR322 GLU323 GLN324 PHE325 ILE326 PRO327 MET328 MET329 ARG330 ASN331 SER332 SER333 PRO334 LEU335 LEU336 ILE337 ASP338 ASP339 LEU340 GLY341 PRO342 GLU343 ASP344 PRO345 GLY346 ILE347 ILE348 VAL349 VAL350 GLN351 SER352 VAL353 HIS354 LYS355 GLN356 GLN357 ALA358 GLY359 PHE360 SER361 GLN362 THR363 SER364 GLN365 ILE366 HIS367 LYS368 LYS369 ASP370 SER371 HIS372 ILE373 LYS374 GLY375 GLN376 LEU377 ARG378 TYR379 CYS380 ASP381 HIS382 LYS383 HIS384 PHE385 ASN386 ASN387 SER388 PHE389 ASN390 LEU391 PHE392 MET393 SER394 THR395 SER396 PRO397 PHE398 TYR399 PRO400 MET401 TYR402 ALA403 ALA404 LEU405 ASP406 VAL407 ASN408 ALA409 ALA410 MET411 GLN412 GLU413 GLY414 GLU415 ALA416 GLY417 ARG418 LYS419 LEU420 TRP421 HIS422 ASP423 LEU424 LEU425 ILE426 THR427 THR428 ILE429 GLU430 ALA431 ARG432 LYS433 LYS434 LEU435 ILE436 LYS437 ALA438 GLY439 SER440 MET441 PHE442 ARG443 PRO444 PHE445 VAL446 PRO447 PRO448 VAL449 VAL450 ASN451 GLY452 LYS453 LYS454 TRP455 GLU456 ASP457 GLY458 ASP459 THR460 GLU461 ASP462 MET463 ALA464 ASN465 ASN466 ILE467 ASP468 TYR469 TRP470 ARG471 PHE472 GLU473 LYS474 GLY475 ALA476 LYS477 TRP478 HIS479 ALA480 TYR481 GLU482 GLY483 TYR484 GLY485 ASP486 ASN487 GLN488 TYR489 TYR490 VAL491 ASP492 PRO493 ASN494 LYS495 PHE496 MET497 LEU498 THR499 THR500 PRO501 GLY502 ILE503 ASN504 PRO505 GLU506 THR507 GLY508 ASP509 TYR510 GLU511 ASP512 PHE513 GLY514 VAL515 PRO516 ALA517 THR518 ILE519 VAL520 ALA521 ASN522 TYR523 LEU524 ARG525 ASP526 HIS527 GLY528 ILE529 ILE530 PRO531 GLU532 LYS533 SER534 ASP535 LEU536 ASN537 SER538 ILE539 LEU540 PHE541 LEU542 MET543 THR544 PRO545 ALA546 GLU547 THR548 PRO549 ALA550 LYS551 MET552 ASN553 ASN554 LEU555 ILE556 THR557 GLN558 LEU559 LEU560 GLN561 LEU562 GLN563 ARG564 LEU565 ILE566 GLU567 GLU568 ASP569 ALA570 PRO571 LEU572 LYS573 GLN574 VAL575 LEU576 PRO577 SER578 ILE579 TYR580 ALA581 ALA582 ASN583 GLU584 GLU585 ARG586 TYR587 ASN588 GLY589 TYR590 THR591 ILE592 ARG593 GLU594 LEU595 CYS596 GLN597 GLU598 LEU599 HIS600 ASP601 PHE602 TYR603 LYS604 ASN605 ASN606 ASN607 THR608 PHE609 THR610 TYR611 GLN612 LYS613 ARG614 LEU615 PHE616 LEU617 ARG618 GLU619 PHE620 PHE621 PRO622 GLU623 GLN624 GLY625 MET626 LEU627 PRO628 TYR629 GLU630 ALA631 ARG632 GLN633 GLU634 PHE635 ILE636 ARG637 ASN638 HIS639 ASN640 LYS641 LEU642 VAL643 PRO644 LEU645 ASN646 LYS647 ILE648 GLU649 GLY650 GLU651 ILE652 ALA653 LEU654 GLU655 GLY656 ALA657 LEU658 PRO659 TYR660 PRO661 PRO662 GLY663 VAL664 PHE665 CYS666 VAL667 ALA668 PRO669 GLY670 GLU671 LYS672 TRP673 SER674 GLU675 THR676 ALA677 VAL678 LYS679 TYR680 PHE681 THR682 ILE683 LEU684 GLN685 ASP686 GLY687 ILE688 ASN689 ASN690 PHE691 PRO692 GLY693 PHE694 ALA695 PRO696 GLU697 ILE698 GLN699 GLY700 VAL701 TYR702 PHE703 LYS704 GLN705 GLU706 GLY707 ASP708 LYS709 VAL710 VAL711 ALA712 TYR713 GLY714 GLU715 VAL716 TYR717 ASP718 ALA719 GLU720 VAL721 ALA722 LYS723 ASN724 ASP725 ASP726 ARG727 TYR728 ASN729 ASN730
Unit 2 SER1 SER2 SER3 LEU4 LYS5 ILE6 ALA7 SER8 THR9 GLN10 GLU11 ALA12 ARG13 GLN14 TYR15 PHE16 ASP17 THR18 ASP19 ARG20 VAL21 VAL22 VAL23 ASP24 ALA25 VAL26 GLY27 SER28 ASP29 PHE30 THR31 ASP32 VAL33 GLY34 ALA35 VAL36 ILE37 ALA38 MET39 ASP40 TYR41 GLU42 THR43 ASP44 VAL45 ILE46 ASP47 ALA48 ALA49 ASP50 ALA51 THR52 LYS53 PHE54 GLY55 ILE56 PRO57 VAL58 PHE59 ALA60 VAL61 THR62 LYS63 ASP64 ALA65 GLN66 ALA67 ILE68 SER69 ALA70 ASP71 GLU72 LEU73 LYS74 LYS75 ILE76 PHE77 HIS78 ILE79 ILE80 ASP81 LEU82 GLU83 ASN84 LYS85 PHE86 ASP87 ALA88 THR89 VAL90 ASN91 ALA92 ARG93 GLU94 ILE95 GLU96 THR97 ALA98 VAL99 ASN100 ASN101 TYR102 GLU103 ASP104 SER105 ILE106 LEU107 PRO108 PRO109 PHE110 PHE111 LYS112 SER113 LEU114 LYS115 GLU116 TYR117 VAL118 SER119 ARG120 GLY121 LEU122 ILE123 GLN124 PHE125 ASP126 CYS127 PRO128 GLY129 HIS130 GLN131 GLY132 GLY133 GLN134 TYR135 TYR136 ARG137 LYS138 HIS139 PRO140 ALA141 GLY142 ARG143 GLU144 PHE145 TYR146 ASP147 PHE148 PHE149 GLY150 GLU151 THR152 VAL153 PHE154 ARG155 ALA156 ASP157 LEU158 CYS159 ASN160 ALA161 ASP162 VAL163 ALA164 LEU165 GLY166 ASP167 LEU168 LEU169 ILE170 HIS171 GLU172 GLY173 PRO174 ALA175 VAL176 ALA177 ALA178 GLU179 LYS180 HIS181 ALA182 ALA183 ARG184 VAL185 TYR186 ASN187 ALA188 ASP189 LYS190 THR191 TYR192 PHE193 VAL194 LEU195 GLY196 GLY197 SER198 SER199 ASN200 ALA201 ASN202 ASN203 THR204 VAL205 THR206 SER207 ALA208 LEU209 VAL210 SER211 ASN212 GLY213 ASP214 LEU215 VAL216 LEU217 PHE218 ASP219 ARG220 ASN221 ASN222 HIS223 LYS224 SER225 VAL226 TYR227 ASN228 SER229 ALA230 LEU231 ALA232 MET233 ALA234 GLY235 GLY236 ARG237 PRO238 VAL239 TYR240 LEU241 GLN242 THR243 ASN244 ARG245 ASN246 PRO247 TYR248 GLY249 PHE250 ILE251 GLY252 GLY253 ILE254 TYR255 ASP256 SER257 ASP258 PHE259 ASP260 GLU261 LYS262 LYS263 ILE264 ARG265 GLU266 LEU267 ALA268 ALA269 LYS270 VAL271 ASP272 PRO273 GLU274 ARG275 ALA276 LYS277 TRP278 LYS279 ARG280 PRO281 PHE282 ARG283 LEU284 ALA285 VAL286 ILE287 GLN288 LEU289 GLY290 THR291 TYR292 ASP293 GLY294 THR295 ILE296 TYR297 ASN298 ALA299 HIS300 GLU301 VAL302 VAL303 LYS304 ARG305 ILE306 GLY307 HIS308 LEU309 CYS310 ASP311 TYR312 ILE313 GLU314 PHE315 ASP316 SER317 ALA318 TRP319 VAL320 GLY321 TYR322 GLU323 GLN324 PHE325 ILE326 PRO327 MET328 MET329 ARG330 ASN331 SER332 SER333 PRO334 LEU335 LEU336 ILE337 ASP338 ASP339 LEU340 GLY341 PRO342 GLU343 ASP344 PRO345 GLY346 ILE347 ILE348 VAL349 VAL350 GLN351 SER352 VAL353 HIS354 LYS355 GLN356 GLN357 ALA358 GLY359 PHE360 SER361 GLN362 THR363 SER364 GLN365 ILE366 HIS367 LYS368 LYS369 ASP370 SER371 HIS372 ILE373 LYS374 GLY375 GLN376 LEU377 ARG378 TYR379 CYS380 ASP381 HIS382 LYS383 HIS384 PHE385 ASN386 ASN387 SER388 PHE389 ASN390 LEU391 PHE392 MET393 SER394 THR395 SER396 PRO397 PHE398 TYR399 PRO400 MET401 TYR402 ALA403 ALA404 LEU405 ASP406 VAL407 ASN408 ALA409 ALA410 MET411 GLN412 GLU413 GLY414 GLU415 ALA416 GLY417 ARG418 LYS419 LEU420 TRP421 HIS422 ASP423 LEU424 LEU425 ILE426 THR427 THR428 ILE429 GLU430 ALA431 ARG432 LYS433 LYS434 LEU435 ILE436 LYS437 ALA438 GLY439 SER440 MET441 PHE442 ARG443 PRO444 PHE445 VAL446 PRO447 PRO448 VAL449 VAL450 ASN451 GLY452 LYS453 LYS454 TRP455 GLU456 ASP457 GLY458 ASP459 THR460 GLU461 ASP462 MET463 ALA464 ASN465 ASN466 ILE467 ASP468 TYR469 TRP470 ARG471 PHE472 GLU473 LYS474 GLY475 ALA476 LYS477 TRP478 HIS479 ALA480 TYR481 GLU482 GLY483 TYR484 GLY485 ASP486 ASN487 GLN488 TYR489 TYR490 VAL491 ASP492 PRO493 ASN494 LYS495 PHE496 MET497 LEU498 THR499 THR500 PRO501 GLY502 ILE503 ASN504 PRO505 GLU506 THR507 GLY508 ASP509 TYR510 GLU511 ASP512 PHE513 GLY514 VAL515 PRO516 ALA517 THR518 ILE519 VAL520 ALA521 ASN522 TYR523 LEU524 ARG525 ASP526 HIS527 GLY528 ILE529 ILE530 PRO531 GLU532 LYS533 SER534 ASP535 LEU536 ASN537 SER538 ILE539 LEU540 PHE541 LEU542 MET543 THR544 PRO545 ALA546 GLU547 THR548 PRO549 ALA550 LYS551 MET552 ASN553 ASN554 LEU555 ILE556 THR557 GLN558 LEU559 LEU560 GLN561 LEU562 GLN563 ARG564 LEU565 ILE566 GLU567 GLU568 ASP569 ALA570 PRO571 LEU572 LYS573 GLN574 VAL575 LEU576 PRO577 SER578 ILE579 TYR580 ALA581 ALA582 ASN583 GLU584 GLU585 ARG586 TYR587 ASN588 GLY589 TYR590 THR591 ILE592 ARG593 GLU594 LEU595 CYS596 GLN597 GLU598 LEU599 HIS600 ASP601 PHE602 TYR603 LYS604 ASN605 ASN606 ASN607 THR608 PHE609 THR610 TYR611 GLN612 LYS613 ARG614 LEU615 PHE616 LEU617 ARG618 GLU619 PHE620 PHE621 PRO622 GLU623 GLN624 GLY625 MET626 LEU627 PRO628 TYR629 GLU630 ALA631 ARG632 GLN633 GLU634 PHE635 ILE636 ARG637 ASN638 HIS639 ASN640 LYS641 LEU642 VAL643 PRO644 LEU645 ASN646 LYS647 ILE648 GLU649 GLY650 GLU651 ILE652 ALA653 LEU654 GLU655 GLY656 ALA657 LEU658 PRO659 TYR660 PRO661 PRO662 GLY663 VAL664 PHE665 CYS666 VAL667 ALA668 PRO669 GLY670 GLU671 LYS672 TRP673 SER674 GLU675 THR676 ALA677 VAL678 LYS679 TYR680 PHE681 THR682 ILE683 LEU684 GLN685 ASP686 GLY687 ILE688 ASN689 ASN690 PHE691 PRO692 GLY693 PHE694 ALA695 PRO696 GLU697 ILE698 GLN699 GLY700 VAL701 TYR702 PHE703 LYS704 GLN705 GLU706 GLY707 ASP708 LYS709 VAL710 VAL711 ALA712 TYR713 GLY714 GLU715 VAL716 TYR717 ASP718 ALA719 GLU720 VAL721 ALA722 LYS723 ASN724 ASP725 ASP726 ARG727 TYR728 ASN729 ASN730
Ligands
Unit 3 PLP731
Unit 4 PLP731
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany