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Sequence, Chains, Asymmetric and Biological Units

Title MODEL FOR THIOSTREPTON ANTIBIOTIC BINDING TO L11 SUBSTRATE F RIBOSOMAL RNA
Keywords RIBOSOME-ANTIBIOTIC COMPLEX, THIOPEPTIDE, ANTIBACTERIAL, THI OXAZOLE, RIBOSOME, L11, TRANSLATION INHIBITION
Experiment NMR, theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   50S RIBOSOMAL PROTEIN L11  A 133 999 0
2  Protein   THIOSTREPTON  B 19 35 79
3  RNA    C 58 1237 0
total       210 2271 79

Proteins
Unit 1 GLN8 ILE9 LYS10 LEU11 GLN12 LEU13 PRO14 ALA15 GLY16 LYS17 ALA18 THR19 PRO20 ALA21 PRO22 PRO23 VAL24 GLY25 PRO26 ALA27 LEU28 GLY29 GLN30 HIS31 GLY32 VAL33 ASN34 ILE35 MET36 GLU37 PHE38 CYS39 LYS40 ARG41 PHE42 ASN43 ALA44 GLU45 THR46 ALA47 ASP48 LYS49 ALA50 GLY51 MET52 ILE53 LEU54 PRO55 VAL56 VAL57 ILE58 THR59 VAL60 TYR61 GLU62 ASP63 LYS64 SER65 PHE66 THR67 PHE68 ILE69 ILE70 LYS71 THR72 PRO73 PRO74 ALA75 SER76 PHE77 LEU78 LEU79 LYS80 LYS81 ALA82 ALA83 GLY84 ILE85 GLU86 LYS87 GLY88 SER89 SER90 GLU91 PRO92 LYS93 ARG94 LYS95 ILE96 VAL97 GLY98 LYS99 VAL100 THR101 ARG102 LYS103 GLN104 ILE105 GLU106 GLU107 ILE108 ALA109 LYS110 THR111 LYS112 MET113 PRO114 ASP115 LEU116 ASN117 ALA118 ASN119 SER120 LEU121 GLU122 ALA123 ALA124 MET125 LYS126 ILE127 ILE128 GLU129 GLY130 THR131 ALA132 LYS133 SER134 MET135 GLY136 ILE137 GLU138 VAL139 VAL140
Unit 2 QUA0 ILE1 ALA2 DHA3 ALA4 SER5 BB96 THR7 DBU8 DCY9 TS910 BB911 THR12 BB913 MH614 BB915 DHA16 DHA17 NH218

Nucleic acids
Unit 3 G1051 C1052 U1053 G1054 G1055 G1056 A1057 U1058 G1059 U1060 U1061 G1062 G1063 C1064 U1065 U1066 A1067 G1068 A1069 A1070 G1071 C1072 A1073 G1074 C1075 C1076 A1077 U1078 C1079 A1080 U1081 U1082 U1083 A1084 A1085 A1086 G1087 A1088 G1089 U1090 G1091 C1092 G1093 U1094 A1095 A1096 C1097 A1098 G1099 C1100 U1101 C1102 A1103 C1104 C1105 A1106 G1107 C1108

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany