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Sequence, Chains, Asymmetric and Biological Units

Title THE X-RAY CRYSTAL STRUCTURE OF AGROBACTERIUM TUMEFACIENS DPS, A MEMBER OF THE FAMILY THAT PROTECT DNA WITHOUT BINDING
Keywords IRON-BINDING PROTEIN, DNA PROTECTION FROM OXIDATIVE DAMAGE, DNA-BINDING, IRON- BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1O9R     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AGROBACTERIUM TUMEFACIENS DPS  A 162 1256 0
2  Protein   AGROBACTERIUM TUMEFACIENS DPS  B 162 1256 0
3  Protein   AGROBACTERIUM TUMEFACIENS DPS  C 159 1232 0
4  Protein   AGROBACTERIUM TUMEFACIENS DPS  D 160 1239 0
5  Protein   AGROBACTERIUM TUMEFACIENS DPS  E 162 1256 0
6  Protein   AGROBACTERIUM TUMEFACIENS DPS  F 162 1256 0
7  Ligand   AGROBACTERIUM TUMEFACIENS DPS  A 1 0 1
8  Ligand   AGROBACTERIUM TUMEFACIENS DPS  B 2 0 9
9  Ligand   AGROBACTERIUM TUMEFACIENS DPS  C 1 0 1
10  Ligand   AGROBACTERIUM TUMEFACIENS DPS  D 2 0 5
11  Ligand   AGROBACTERIUM TUMEFACIENS DPS  E 2 0 9
12  Ligand   AGROBACTERIUM TUMEFACIENS DPS  F 1 0 1
13 Water     741 0 741
total       1717 7495 767
Proteins
Unit 1 MET1 LYS2 THR3 HIS4 LYS5 THR6 LYS7 ASN8 ASP9 LEU10 PRO11 SER12 ASN13 ALA14 LYS15 SER16 THR17 VAL18 ILE19 GLY20 ILE21 LEU22 ASN23 GLU24 SER25 LEU26 ALA27 SER28 VAL29 ILE30 ASP31 LEU32 ALA33 LEU34 VAL35 THR36 LYS37 GLN38 ALA39 HIS40 TRP41 ASN42 LEU43 LYS44 GLY45 PRO46 GLN47 PHE48 ILE49 ALA50 VAL51 HIS52 GLU53 LEU54 LEU55 ASP56 THR57 PHE58 ARG59 THR60 GLN61 LEU62 ASP63 ASN64 HIS65 GLY66 ASP67 THR68 ILE69 ALA70 GLU71 ARG72 VAL73 VAL74 GLN75 LEU76 GLY77 GLY78 THR79 ALA80 LEU81 GLY82 SER83 LEU84 GLN85 ALA86 VAL87 SER88 SER89 THR90 THR91 LYS92 LEU93 LYS94 ALA95 TYR96 PRO97 THR98 ASP99 ILE100 TYR101 LYS102 ILE103 HIS104 ASP105 HIS106 LEU107 ASP108 ALA109 LEU110 ILE111 GLU112 ARG113 TYR114 GLY115 GLU116 VAL117 ALA118 ASN119 MET120 ILE121 ARG122 LYS123 ALA124 ILE125 ASP126 ASP127 SER128 ASP129 GLU130 ALA131 GLY132 ASP133 PRO134 THR135 THR136 ALA137 ASP138 ILE139 PHE140 THR141 ALA142 ALA143 SER144 ARG145 ASP146 LEU147 ASP148 LYS149 SER150 LEU151 TRP152 PHE153 LEU154 GLU155 ALA156 HIS157 VAL158 GLN159 GLU160 LYS161 SER162
Unit 2 MET1 LYS2 THR3 HIS4 LYS5 THR6 LYS7 ASN8 ASP9 LEU10 PRO11 SER12 ASN13 ALA14 LYS15 SER16 THR17 VAL18 ILE19 GLY20 ILE21 LEU22 ASN23 GLU24 SER25 LEU26 ALA27 SER28 VAL29 ILE30 ASP31 LEU32 ALA33 LEU34 VAL35 THR36 LYS37 GLN38 ALA39 HIS40 TRP41 ASN42 LEU43 LYS44 GLY45 PRO46 GLN47 PHE48 ILE49 ALA50 VAL51 HIS52 GLU53 LEU54 LEU55 ASP56 THR57 PHE58 ARG59 THR60 GLN61 LEU62 ASP63 ASN64 HIS65 GLY66 ASP67 THR68 ILE69 ALA70 GLU71 ARG72 VAL73 VAL74 GLN75 LEU76 GLY77 GLY78 THR79 ALA80 LEU81 GLY82 SER83 LEU84 GLN85 ALA86 VAL87 SER88 SER89 THR90 THR91 LYS92 LEU93 LYS94 ALA95 TYR96 PRO97 THR98 ASP99 ILE100 TYR101 LYS102 ILE103 HIS104 ASP105 HIS106 LEU107 ASP108 ALA109 LEU110 ILE111 GLU112 ARG113 TYR114 GLY115 GLU116 VAL117 ALA118 ASN119 MET120 ILE121 ARG122 LYS123 ALA124 ILE125 ASP126 ASP127 SER128 ASP129 GLU130 ALA131 GLY132 ASP133 PRO134 THR135 THR136 ALA137 ASP138 ILE139 PHE140 THR141 ALA142 ALA143 SER144 ARG145 ASP146 LEU147 ASP148 LYS149 SER150 LEU151 TRP152 PHE153 LEU154 GLU155 ALA156 HIS157 VAL158 GLN159 GLU160 LYS161 SER162
Unit 3 HIS4 LYS5 THR6 LYS7 ASN8 ASP9 LEU10 PRO11 SER12 ASN13 ALA14 LYS15 SER16 THR17 VAL18 ILE19 GLY20 ILE21 LEU22 ASN23 GLU24 SER25 LEU26 ALA27 SER28 VAL29 ILE30 ASP31 LEU32 ALA33 LEU34 VAL35 THR36 LYS37 GLN38 ALA39 HIS40 TRP41 ASN42 LEU43 LYS44 GLY45 PRO46 GLN47 PHE48 ILE49 ALA50 VAL51 HIS52 GLU53 LEU54 LEU55 ASP56 THR57 PHE58 ARG59 THR60 GLN61 LEU62 ASP63 ASN64 HIS65 GLY66 ASP67 THR68 ILE69 ALA70 GLU71 ARG72 VAL73 VAL74 GLN75 LEU76 GLY77 GLY78 THR79 ALA80 LEU81 GLY82 SER83 LEU84 GLN85 ALA86 VAL87 SER88 SER89 THR90 THR91 LYS92 LEU93 LYS94 ALA95 TYR96 PRO97 THR98 ASP99 ILE100 TYR101 LYS102 ILE103 HIS104 ASP105 HIS106 LEU107 ASP108 ALA109 LEU110 ILE111 GLU112 ARG113 TYR114 GLY115 GLU116 VAL117 ALA118 ASN119 MET120 ILE121 ARG122 LYS123 ALA124 ILE125 ASP126 ASP127 SER128 ASP129 GLU130 ALA131 GLY132 ASP133 PRO134 THR135 THR136 ALA137 ASP138 ILE139 PHE140 THR141 ALA142 ALA143 SER144 ARG145 ASP146 LEU147 ASP148 LYS149 SER150 LEU151 TRP152 PHE153 LEU154 GLU155 ALA156 HIS157 VAL158 GLN159 GLU160 LYS161 SER162
Unit 4 THR3 HIS4 LYS5 THR6 LYS7 ASN8 ASP9 LEU10 PRO11 SER12 ASN13 ALA14 LYS15 SER16 THR17 VAL18 ILE19 GLY20 ILE21 LEU22 ASN23 GLU24 SER25 LEU26 ALA27 SER28 VAL29 ILE30 ASP31 LEU32 ALA33 LEU34 VAL35 THR36 LYS37 GLN38 ALA39 HIS40 TRP41 ASN42 LEU43 LYS44 GLY45 PRO46 GLN47 PHE48 ILE49 ALA50 VAL51 HIS52 GLU53 LEU54 LEU55 ASP56 THR57 PHE58 ARG59 THR60 GLN61 LEU62 ASP63 ASN64 HIS65 GLY66 ASP67 THR68 ILE69 ALA70 GLU71 ARG72 VAL73 VAL74 GLN75 LEU76 GLY77 GLY78 THR79 ALA80 LEU81 GLY82 SER83 LEU84 GLN85 ALA86 VAL87 SER88 SER89 THR90 THR91 LYS92 LEU93 LYS94 ALA95 TYR96 PRO97 THR98 ASP99 ILE100 TYR101 LYS102 ILE103 HIS104 ASP105 HIS106 LEU107 ASP108 ALA109 LEU110 ILE111 GLU112 ARG113 TYR114 GLY115 GLU116 VAL117 ALA118 ASN119 MET120 ILE121 ARG122 LYS123 ALA124 ILE125 ASP126 ASP127 SER128 ASP129 GLU130 ALA131 GLY132 ASP133 PRO134 THR135 THR136 ALA137 ASP138 ILE139 PHE140 THR141 ALA142 ALA143 SER144 ARG145 ASP146 LEU147 ASP148 LYS149 SER150 LEU151 TRP152 PHE153 LEU154 GLU155 ALA156 HIS157 VAL158 GLN159 GLU160 LYS161 SER162
Unit 5 MET1 LYS2 THR3 HIS4 LYS5 THR6 LYS7 ASN8 ASP9 LEU10 PRO11 SER12 ASN13 ALA14 LYS15 SER16 THR17 VAL18 ILE19 GLY20 ILE21 LEU22 ASN23 GLU24 SER25 LEU26 ALA27 SER28 VAL29 ILE30 ASP31 LEU32 ALA33 LEU34 VAL35 THR36 LYS37 GLN38 ALA39 HIS40 TRP41 ASN42 LEU43 LYS44 GLY45 PRO46 GLN47 PHE48 ILE49 ALA50 VAL51 HIS52 GLU53 LEU54 LEU55 ASP56 THR57 PHE58 ARG59 THR60 GLN61 LEU62 ASP63 ASN64 HIS65 GLY66 ASP67 THR68 ILE69 ALA70 GLU71 ARG72 VAL73 VAL74 GLN75 LEU76 GLY77 GLY78 THR79 ALA80 LEU81 GLY82 SER83 LEU84 GLN85 ALA86 VAL87 SER88 SER89 THR90 THR91 LYS92 LEU93 LYS94 ALA95 TYR96 PRO97 THR98 ASP99 ILE100 TYR101 LYS102 ILE103 HIS104 ASP105 HIS106 LEU107 ASP108 ALA109 LEU110 ILE111 GLU112 ARG113 TYR114 GLY115 GLU116 VAL117 ALA118 ASN119 MET120 ILE121 ARG122 LYS123 ALA124 ILE125 ASP126 ASP127 SER128 ASP129 GLU130 ALA131 GLY132 ASP133 PRO134 THR135 THR136 ALA137 ASP138 ILE139 PHE140 THR141 ALA142 ALA143 SER144 ARG145 ASP146 LEU147 ASP148 LYS149 SER150 LEU151 TRP152 PHE153 LEU154 GLU155 ALA156 HIS157 VAL158 GLN159 GLU160 LYS161 SER162
Unit 6 MET1 LYS2 THR3 HIS4 LYS5 THR6 LYS7 ASN8 ASP9 LEU10 PRO11 SER12 ASN13 ALA14 LYS15 SER16 THR17 VAL18 ILE19 GLY20 ILE21 LEU22 ASN23 GLU24 SER25 LEU26 ALA27 SER28 VAL29 ILE30 ASP31 LEU32 ALA33 LEU34 VAL35 THR36 LYS37 GLN38 ALA39 HIS40 TRP41 ASN42 LEU43 LYS44 GLY45 PRO46 GLN47 PHE48 ILE49 ALA50 VAL51 HIS52 GLU53 LEU54 LEU55 ASP56 THR57 PHE58 ARG59 THR60 GLN61 LEU62 ASP63 ASN64 HIS65 GLY66 ASP67 THR68 ILE69 ALA70 GLU71 ARG72 VAL73 VAL74 GLN75 LEU76 GLY77 GLY78 THR79 ALA80 LEU81 GLY82 SER83 LEU84 GLN85 ALA86 VAL87 SER88 SER89 THR90 THR91 LYS92 LEU93 LYS94 ALA95 TYR96 PRO97 THR98 ASP99 ILE100 TYR101 LYS102 ILE103 HIS104 ASP105 HIS106 LEU107 ASP108 ALA109 LEU110 ILE111 GLU112 ARG113 TYR114 GLY115 GLU116 VAL117 ALA118 ASN119 MET120 ILE121 ARG122 LYS123 ALA124 ILE125 ASP126 ASP127 SER128 ASP129 GLU130 ALA131 GLY132 ASP133 PRO134 THR135 THR136 ALA137 ASP138 ILE139 PHE140 THR141 ALA142 ALA143 SER144 ARG145 ASP146 LEU147 ASP148 LYS149 SER150 LEU151 TRP152 PHE153 LEU154 GLU155 ALA156 HIS157 VAL158 GLN159 GLU160 LYS161 SER162
Ligands
Unit 7 FE1163
Unit 8 FE1163 TRS1164
Unit 9 FE1163
Unit 10 FE1163 EDO1164
Unit 11 FE1163 TRS1164
Unit 12 FE1163
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany