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Sequence, Chains, Asymmetric and Biological Units

Title THE COMPLEX OF A NOVEL ANTIBIOTIC WITH THE AMINOACYL SITE OF BACTERIAL RIBOSOME REVEALED BY X-RAY CRYSTALLOGRAPHY.
Keywords ANTIBIOTIC/RNA, RNA-ANTIBIOTIC INTERACTIONS, A-SITE, ANTIBIO COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1O9M     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 21 446 0
2  RNA    B 21 446 0
3  Ligand   EUBACTERIAL A-SITE  B 4 0 37
4 Water     63 0 63
total       109 892 100

Nucleic acids
Unit 1 G1403 C1404 G1405 U1406 C1407 A1408 C1409 A1410 C1411 C1412 G1488 G1489 U1490 G1491 A1492 A1493 G1494 U1495 C1496 G1497 C1498
Unit 2 G1403 C1404 G1405 U1406 C1407 A1408 C1409 A1410 C1411 C1412 G1488 G1489 U1490 G1491 A1492 A1493 G1494 U1495 C1496 G1497 C1498

Ligands
Unit 3 BDG2499 PA22500 P242501 42B2502

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany