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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF THE BOVINE LYSOSOMAL A-MANNOSIDASE SUGGESTS MECHANISM FOR LOW PH ACTIVATION
Keywords HYDROLASE, GLYCOSYL HYDROLASE FAMILY 38, A-MANNOSIDASE, LYSO
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1O7D     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LYSOSOMAL ALPHA-MANNOSIDASE  A 292 2365 0
2  Protein   LYSOSOMAL ALPHA-MANNOSIDASE  B 76 622 0
3  Protein   LYSOSOMAL ALPHA-MANNOSIDASE  C 151 1136 0
4  Protein   LYSOSOMAL ALPHA-MANNOSIDASE  D 270 2150 0
5  Protein   LYSOSOMAL ALPHA-MANNOSIDASE  E 109 851 0
6  Ligand    F 9 0 105
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    I 2 0 28
10  Ligand   LYSOSOMAL ALPHA-MANNOSIDASE  A 4 0 28
11  Ligand   LYSOSOMAL ALPHA-MANNOSIDASE  E 1 0 5
12 Water     39 0 39
total       957 7124 261
Proteins
Unit 1 GLY51 TYR52 LYS53 THR54 CYS55 PRO56 LYS57 VAL58 LYS59 PRO60 ASP61 MET62 LEU63 ASN64 VAL65 HIS66 LEU67 VAL68 PRO69 HIS70 THR71 HIS72 ASP73 ASP74 VAL75 GLY76 TRP77 LEU78 LYS79 THR80 VAL81 ASP82 GLN83 TYR84 PHE85 TYR86 GLY87 ILE88 TYR89 ASN90 ASN91 ILE92 GLN93 PRO94 ALA95 GLY96 VAL97 GLN98 TYR99 ILE100 LEU101 ASP102 SER103 VAL104 ILE105 SER106 SER107 LEU108 LEU109 ALA110 ASN111 PRO112 THR113 ARG114 ARG115 PHE116 ILE117 TYR118 VAL119 GLU120 ILE121 ALA122 PHE123 PHE124 SER125 ARG126 TRP127 TRP128 ARG129 GLN130 GLN131 THR132 ASN133 ALA134 THR135 GLN136 LYS137 ILE138 VAL139 ARG140 GLU141 LEU142 VAL143 ARG144 GLN145 GLY146 ARG147 LEU148 GLU149 PHE150 ALA151 ASN152 GLY153 GLY154 TRP155 VAL156 MET157 ASN158 ASP159 GLU160 ALA161 THR162 THR163 HIS164 TYR165 GLY166 ALA167 ILE168 ILE169 ASP170 GLN171 MET172 THR173 LEU174 GLY175 LEU176 ARG177 PHE178 LEU179 GLU180 GLU181 THR182 PHE183 GLY184 SER185 ASP186 GLY187 ARG188 PRO189 ARG190 VAL191 ALA192 TRP193 HIS194 ILE195 ASP196 PRO197 PHE198 GLY199 HIS200 SER201 ARG202 GLU203 GLN204 ALA205 SER206 LEU207 PHE208 ALA209 GLN210 MET211 GLY212 PHE213 ASP214 GLY215 PHE216 PHE217 PHE218 GLY219 ARG220 LEU221 ASP222 TYR223 GLN224 ASP225 LYS226 LYS227 VAL228 ARG229 LYS230 LYS231 THR232 LEU233 GLN234 MET235 GLU236 GLN237 VAL238 TRP239 ARG240 ALA241 SER242 THR243 SER244 LEU245 LYS246 PRO247 PRO248 THR249 ALA250 ASP251 LEU252 PHE253 THR254 SER255 VAL256 LEU257 PRO258 ASN259 MET260 TYR261 ASN262 PRO263 PRO264 GLU265 GLY266 LEU267 CYS268 TRP269 ASP270 MET271 LEU272 CYS273 ALA274 ASP275 LYS276 PRO277 VAL278 VAL279 GLU280 ASP281 THR282 ARG283 SER284 PRO285 GLU286 TYR287 ASN288 ALA289 LYS290 GLU291 LEU292 VAL293 ARG294 TYR295 PHE296 LEU297 LYS298 LEU299 ALA300 THR301 ASP302 GLN303 GLY304 LYS305 LEU306 TYR307 ARG308 THR309 LYS310 HIS311 THR312 VAL313 MET314 THR315 MET316 GLY317 SER318 ASP319 PHE320 GLN321 TYR322 GLU323 ASN324 ALA325 ASN326 THR327 TRP328 PHE329 LYS330 ASN331 LEU332 ASP333 LYS334 LEU335 ILE336 GLN337 LEU338 VAL339 ASN340 ALA341 GLN342
Unit 2 ILE347 ARG348 VAL349 ASN350 VAL351 LEU352 TYR353 SER354 THR355 PRO356 ALA357 CYS358 TYR359 LEU360 TRP361 GLU362 LEU363 ASN364 LYS365 ALA366 ASN367 LEU368 SER369 TRP370 SER371 VAL372 LYS373 LYS374 ASP375 ASP376 PHE377 PHE378 PRO379 TYR380 ALA381 ASP382 GLY383 PRO384 TYR385 MET386 PHE387 TRP388 THR389 GLY390 TYR391 PHE392 SER393 SER394 ARG395 PRO396 ALA397 LEU398 LYS399 ARG400 TYR401 GLU402 ARG403 LEU404 SER405 TYR406 ASN407 PHE408 LEU409 GLN410 VAL411 CYS412 ASN413 GLN414 LEU415 GLU416 ALA417 LEU418 ALA419 GLY420 PRO421 ALA422
Unit 3 GLY431 ASP432 SER433 ALA434 PRO435 LEU436 ASN437 GLU438 ALA439 MET440 ALA441 VAL442 LEU443 GLN444 HIS445 HIS446 ASP447 ALA448 VAL449 SER450 GLY451 THR452 SER453 ARG454 GLN455 HIS456 VAL457 ALA458 ASN459 ASP460 TYR461 ALA462 ARG463 GLN464 LEU465 SER466 GLU467 GLY468 TRP469 ARG470 PRO471 CYS472 GLU473 VAL474 LEU475 MET476 SER477 ASN478 ALA479 LEU480 ALA481 HIS482 LEU483 SER484 GLY485 LEU486 LYS487 GLU488 ASP489 PHE490 ALA491 PHE492 CYS493 ARG494 LYS495 LEU496 ASN497 ILE498 SER499 ILE500 CYS501 PRO502 LEU503 THR504 GLN505 THR506 ALA507 GLU508 ARG509 PHE510 GLN511 VAL512 ILE513 VAL514 TYR515 ASN516 PRO517 LEU518 GLY519 ARG520 LYS521 VAL522 ASP523 TRP524 MET525 VAL526 ARG527 LEU528 PRO529 VAL530 SER531 LYS532 HIS533 VAL534 TYR535 LEU536 VAL537 LYS538 ASP539 PRO540 GLY541 GLY542 LYS543 ILE544 VAL545 PRO546 SER547 ASP548 VAL549 VAL550 THR551 ILE552 PRO553 SER554 SER555 ASP556 SER557 GLN558 GLU563 LEU564 LEU565 PHE566 SER567 ALA568 LEU569 VAL570 PRO571 ALA572 VAL573 GLY574 PHE575 SER576 ILE577 TYR578 SER579 VAL580 SER581 GLN582 MET583 PRO584 ASN585
Unit 4 ARG603 ASP604 LEU605 VAL606 ILE607 GLN608 ASN609 GLU610 TYR611 LEU612 ARG613 ALA614 ARG615 PHE616 ASP617 PRO618 ASN619 THR620 GLY621 LEU622 LEU623 MET624 GLU625 LEU626 GLU627 ASN628 LEU629 LEU633 LEU634 LEU635 PRO636 VAL637 ARG638 GLN639 ALA640 PHE641 TYR642 TRP643 TYR644 ASN645 ALA646 SER647 THR648 GLY649 ASN650 ASN651 LEU652 SER653 SER654 GLN655 ALA656 SER657 GLY658 ALA659 TYR660 ILE661 PHE662 ARG663 PRO664 ASN665 GLN666 ASN667 LYS668 PRO669 LEU670 PHE671 VAL672 SER673 HIS674 TRP675 ALA676 GLN677 THR678 HIS679 LEU680 VAL681 LYS682 ALA683 SER684 LEU685 VAL686 GLN687 GLU688 VAL689 HIS690 GLN691 ASN692 PHE693 SER694 ALA695 TRP696 CYS697 SER698 GLN699 VAL700 VAL701 ARG702 LEU703 TYR704 PRO705 ARG706 GLN707 ARG708 HIS709 LEU710 GLU711 LEU712 GLU713 TRP714 THR715 VAL716 GLY717 PRO718 ILE719 PRO720 VAL721 GLY722 ASP723 GLY724 TRP725 GLY726 LYS727 GLU728 VAL729 ILE730 SER731 ARG732 PHE733 ASP734 THR735 ALA736 LEU737 ALA738 THR739 ARG740 GLY741 LEU742 PHE743 TYR744 THR745 ASP746 SER747 ASN748 GLY749 ARG750 GLU751 ILE752 LEU753 GLU754 ARG755 ARG756 ARG757 ASN758 TYR759 ARG760 PRO761 THR762 TRP763 LYS764 LEU765 ASN766 GLN767 THR768 GLU769 PRO770 VAL771 ALA772 GLY773 ASN774 TYR775 TYR776 PRO777 VAL778 ASN779 SER780 ARG781 ILE782 TYR783 ILE784 THR785 ASP786 GLY787 ASN788 MET789 GLN790 LEU791 THR792 VAL793 LEU794 THR795 ASP796 ARG797 SER798 GLN799 GLY800 GLY801 SER802 SER803 LEU804 ARG805 ASP806 GLY807 SER808 LEU809 GLU810 LEU811 MET812 VAL813 HIS814 ARG815 ARG816 LEU817 LEU818 LYS819 ASP820 ASP821 ALA822 ARG823 GLY824 VAL825 GLY826 GLU827 PRO828 LEU829 ASN830 LYS831 GLU832 GLY833 SER834 GLY835 LEU836 TRP837 VAL838 ARG839 GLY840 ARG841 HIS842 LEU843 VAL844 LEU845 LEU846 ASP847 LYS848 LYS849 GLU850 THR851 ALA852 ALA853 ALA854 ARG855 HIS856 ARG857 LEU858 GLN859 ALA860 GLU861 MET862 GLU863 VAL864 LEU865 ALA866 PRO867 GLN868 VAL869 VAL870 LEU871 ALA872 GLN873 GLY874 GLY875
Unit 5 PRO885 ARG886 THR887 GLN888 PHE889 SER890 GLY891 LEU892 ARG893 ARG894 GLU895 LEU896 PRO897 PRO898 SER899 VAL900 ARG901 LEU902 LEU903 THR904 LEU905 ALA906 ARG907 TRP908 GLY909 PRO910 GLU911 THR912 LEU913 LEU914 LEU915 ARG916 LEU917 GLU918 HIS919 GLN920 PHE921 ALA922 VAL923 GLY924 GLU925 ASP926 SER927 GLY928 ARG929 ASN930 LEU931 SER932 SER933 PRO934 VAL935 THR936 LEU937 ASP938 LEU939 THR940 ASN941 LEU942 PHE943 SER944 ALA945 PHE946 THR947 ILE948 THR949 ASN950 LEU951 ARG952 GLU953 THR954 THR955 LEU956 ALA957 ALA958 ASN959 GLN960 LEU961 LEU962 ALA963 TYR964 ALA965 SER966 ARG967 LEU968 GLN969 TRP970 THR971 THR972 ASP973 ALA988 THR989 ILE990 THR991 LEU992 GLN993 PRO994 MET995 GLU996 ILE997 ARG998 THR999 PHE1000 LEU1001 ALA1002 SER1003 VAL1004 GLN1005 TRP1006 GLU1007
Ligands
Unit 6 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 NAG1 TRS2 ZN3 SO43001
Unit 11 SO43002
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany