1NYT - Sequence, Chains, Asymmetric and Biological Units

• Title: SHIKIMATE DEHYDROGENASE AROE COMPLEXED WITH NADP+
• Keywords: ALPHA/BETA DOMAINS, WIDE CLEFT SEPARATION, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1NYT	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SHIKIMATE 5-DEHYDROGENASE	A	271	2067	0
2	Protein	SHIKIMATE 5-DEHYDROGENASE	B	271	2067	0
3	Protein	SHIKIMATE 5-DEHYDROGENASE	C	269	2049	0
4	Protein	SHIKIMATE 5-DEHYDROGENASE	D	270	2053	0
5	Ligand	SHIKIMATE 5-DEHYDROGENASE	A	6	0	76
6	Ligand	SHIKIMATE 5-DEHYDROGENASE	B	5	0	68
7	Ligand	SHIKIMATE 5-DEHYDROGENASE	C	5	0	68
8	Ligand	SHIKIMATE 5-DEHYDROGENASE	D	3	0	58
9	Water			1333	0	1333
total				2433	8236	1603

Proteins

Unit 1	MET 1 GLU 2 THR 3 TYR 4 ALA 5 VAL 6 PHE 7 GLY 8 ASN 9 PRO 10 ILE 11 ALA 12 HIS 13 SER 14 LYS 15 SER 16 PRO 17 PHE 18 ILE 19 HIS 20 GLN 21 GLN 22 PHE 23 ALA 24 GLN 25 GLN 26 LEU 27 ASN 28 ILE 29 GLU 30 HIS 31 PRO 32 TYR 33 GLY 34 ARG 35 VAL 36 LEU 37 ALA 38 PRO 39 ILE 40 ASN 41 ASP 42 PHE 43 ILE 44 ASN 45 THR 46 LEU 47 ASN 48 ALA 49 PHE 50 PHE 51 SER 52 ALA 53 GLY 54 GLY 55 LYS 56 GLY 57 ALA 58 ASN 59 VAL 60 THR 61 VAL 62 PRO 63 PHE 64 LYS 65 GLU 66 GLU 67 ALA 68 PHE 69 ALA 70 ARG 71 ALA 72 ASP 73 GLU 74 LEU 75 THR 76 GLU 77 ARG 78 ALA 79 ALA 80 LEU 81 ALA 82 GLY 83 ALA 84 VAL 85 ASN 86 THR 87 LEU 88 MET 89 ARG 90 LEU 91 GLU 92 ASP 93 GLY 94 ARG 95 LEU 96 LEU 97 GLY 98 ASP 99 ASN 100 THR 101 ASP 102 GLY 103 VAL 104 GLY 105 LEU 106 LEU 107 SER 108 ASP 109 LEU 110 GLU 111 ARG 112 LEU 113 SER 114 PHE 115 ILE 116 ARG 117 PRO 118 GLY 119 LEU 120 ARG 121 ILE 122 LEU 123 LEU 124 ILE 125 GLY 126 ALA 127 GLY 128 GLY 129 ALA 130 SER 131 ARG 132 GLY 133 VAL 134 LEU 135 LEU 136 PRO 137 LEU 138 LEU 139 SER 140 LEU 141 ASP 142 CYS 143 ALA 144 VAL 145 THR 146 ILE 147 THR 148 ASN 149 ARG 150 THR 151 VAL 152 SER 153 ARG 154 ALA 155 GLU 156 GLU 157 LEU 158 ALA 159 LYS 160 LEU 161 PHE 162 ALA 163 HIS 164 THR 165 GLY 166 SER 167 ILE 168 GLN 169 ALA 170 LEU 171 SER 172 MET 173 ASP 174 GLU 175 LEU 176 GLU 177 GLY 178 HIS 179 GLU 180 PHE 181 ASP 182 LEU 183 ILE 184 ILE 185 ASN 186 ALA 187 THR 188 SER 189 SER 190 GLY 191 ILE 192 SER 193 GLY 194 ASP 195 ILE 196 PRO 197 ALA 198 ILE 199 PRO 200 SER 201 SER 202 LEU 203 ILE 204 HIS 205 PRO 206 GLY 207 ILE 208 TYR 209 CYS 210 TYR 211 ASP 212 MET 213 PHE 214 TYR 215 GLN 216 LYS 217 GLY 218 LYS 219 THR 220 PRO 221 PHE 222 LEU 223 ALA 224 TRP 225 CYS 226 GLU 227 GLN 228 ARG 229 GLY 230 SER 231 LYS 232 ARG 233 ASN 234 ALA 235 ASP 236 GLY 237 LEU 238 GLY 239 MET 240 LEU 241 VAL 242 ALA 243 GLN 244 ALA 245 ALA 246 HIS 247 ALA 248 PHE 249 LEU 250 LEU 251 TRP 252 HIS 253 GLY 254 VAL 255 LEU 256 PRO 257 ASP 258 VAL 259 GLU 260 PRO 261 VAL 262 ILE 263 LYS 264 GLN 265 LEU 266 GLN 267 GLU 268 GLU 269 LEU 270 SER 271
Unit 2	MET 1 GLU 2 THR 3 TYR 4 ALA 5 VAL 6 PHE 7 GLY 8 ASN 9 PRO 10 ILE 11 ALA 12 HIS 13 SER 14 LYS 15 SER 16 PRO 17 PHE 18 ILE 19 HIS 20 GLN 21 GLN 22 PHE 23 ALA 24 GLN 25 GLN 26 LEU 27 ASN 28 ILE 29 GLU 30 HIS 31 PRO 32 TYR 33 GLY 34 ARG 35 VAL 36 LEU 37 ALA 38 PRO 39 ILE 40 ASN 41 ASP 42 PHE 43 ILE 44 ASN 45 THR 46 LEU 47 ASN 48 ALA 49 PHE 50 PHE 51 SER 52 ALA 53 GLY 54 GLY 55 LYS 56 GLY 57 ALA 58 ASN 59 VAL 60 THR 61 VAL 62 PRO 63 PHE 64 LYS 65 GLU 66 GLU 67 ALA 68 PHE 69 ALA 70 ARG 71 ALA 72 ASP 73 GLU 74 LEU 75 THR 76 GLU 77 ARG 78 ALA 79 ALA 80 LEU 81 ALA 82 GLY 83 ALA 84 VAL 85 ASN 86 THR 87 LEU 88 MET 89 ARG 90 LEU 91 GLU 92 ASP 93 GLY 94 ARG 95 LEU 96 LEU 97 GLY 98 ASP 99 ASN 100 THR 101 ASP 102 GLY 103 VAL 104 GLY 105 LEU 106 LEU 107 SER 108 ASP 109 LEU 110 GLU 111 ARG 112 LEU 113 SER 114 PHE 115 ILE 116 ARG 117 PRO 118 GLY 119 LEU 120 ARG 121 ILE 122 LEU 123 LEU 124 ILE 125 GLY 126 ALA 127 GLY 128 GLY 129 ALA 130 SER 131 ARG 132 GLY 133 VAL 134 LEU 135 LEU 136 PRO 137 LEU 138 LEU 139 SER 140 LEU 141 ASP 142 CYS 143 ALA 144 VAL 145 THR 146 ILE 147 THR 148 ASN 149 ARG 150 THR 151 VAL 152 SER 153 ARG 154 ALA 155 GLU 156 GLU 157 LEU 158 ALA 159 LYS 160 LEU 161 PHE 162 ALA 163 HIS 164 THR 165 GLY 166 SER 167 ILE 168 GLN 169 ALA 170 LEU 171 SER 172 MET 173 ASP 174 GLU 175 LEU 176 GLU 177 GLY 178 HIS 179 GLU 180 PHE 181 ASP 182 LEU 183 ILE 184 ILE 185 ASN 186 ALA 187 THR 188 SER 189 SER 190 GLY 191 ILE 192 SER 193 GLY 194 ASP 195 ILE 196 PRO 197 ALA 198 ILE 199 PRO 200 SER 201 SER 202 LEU 203 ILE 204 HIS 205 PRO 206 GLY 207 ILE 208 TYR 209 CYS 210 TYR 211 ASP 212 MET 213 PHE 214 TYR 215 GLN 216 LYS 217 GLY 218 LYS 219 THR 220 PRO 221 PHE 222 LEU 223 ALA 224 TRP 225 CYS 226 GLU 227 GLN 228 ARG 229 GLY 230 SER 231 LYS 232 ARG 233 ASN 234 ALA 235 ASP 236 GLY 237 LEU 238 GLY 239 MET 240 LEU 241 VAL 242 ALA 243 GLN 244 ALA 245 ALA 246 HIS 247 ALA 248 PHE 249 LEU 250 LEU 251 TRP 252 HIS 253 GLY 254 VAL 255 LEU 256 PRO 257 ASP 258 VAL 259 GLU 260 PRO 261 VAL 262 ILE 263 LYS 264 GLN 265 LEU 266 GLN 267 GLU 268 GLU 269 LEU 270 SER 271
Unit 3	MET 1 GLU 2 THR 3 TYR 4 ALA 5 VAL 6 PHE 7 GLY 8 ASN 9 PRO 10 ILE 11 ALA 12 HIS 13 SER 14 LYS 15 SER 16 PRO 17 PHE 18 ILE 19 HIS 20 GLN 21 GLN 22 PHE 23 ALA 24 GLN 25 GLN 26 LEU 27 ASN 28 ILE 29 GLU 30 HIS 31 PRO 32 TYR 33 GLY 34 ARG 35 VAL 36 LEU 37 ALA 38 PRO 39 ILE 40 ASN 41 ASP 42 PHE 43 ILE 44 ASN 45 THR 46 LEU 47 ASN 48 ALA 49 PHE 50 PHE 51 SER 52 ALA 53 GLY 54 GLY 55 LYS 56 GLY 57 ALA 58 ASN 59 VAL 60 THR 61 VAL 62 PRO 63 PHE 64 LYS 65 GLU 66 GLU 67 ALA 68 PHE 69 ALA 70 ARG 71 ALA 72 ASP 73 GLU 74 LEU 75 THR 76 GLU 77 ARG 78 ALA 79 ALA 80 LEU 81 ALA 82 GLY 83 ALA 84 VAL 85 ASN 86 THR 87 LEU 88 MET 89 ARG 90 LEU 91 GLU 92 ASP 93 GLY 94 ARG 95 LEU 96 LEU 97 GLY 98 ASP 99 ASN 100 THR 101 ASP 102 GLY 103 VAL 104 GLY 105 LEU 106 LEU 107 SER 108 ASP 109 LEU 110 GLU 111 ARG 112 LEU 113 SER 114 PHE 115 ILE 116 ARG 117 PRO 118 GLY 119 LEU 120 ARG 121 ILE 122 LEU 123 LEU 124 ILE 125 GLY 126 ALA 127 GLY 128 GLY 129 ALA 130 SER 131 ARG 132 GLY 133 VAL 134 LEU 135 LEU 136 PRO 137 LEU 138 LEU 139 SER 140 LEU 141 ASP 142 CYS 143 ALA 144 VAL 145 THR 146 ILE 147 THR 148 ASN 149 ARG 150 THR 151 VAL 152 SER 153 ARG 154 ALA 155 GLU 156 GLU 157 LEU 158 ALA 159 LYS 160 LEU 161 PHE 162 ALA 163 HIS 164 THR 165 GLY 166 SER 167 ILE 168 GLN 169 ALA 170 LEU 171 SER 172 MET 173 ASP 174 GLU 175 LEU 176 GLU 177 GLY 178 HIS 179 GLU 180 PHE 181 ASP 182 LEU 183 ILE 184 ILE 185 ASN 186 ALA 187 THR 188 SER 189 SER 190 GLY 191 ILE 192 SER 193 GLY 194 ASP 195 ILE 196 PRO 197 ALA 198 ILE 199 PRO 200 SER 201 SER 202 LEU 203 ILE 204 HIS 205 PRO 206 GLY 207 ILE 208 TYR 209 CYS 210 TYR 211 ASP 212 MET 213 PHE 214 TYR 215 GLN 216 LYS 217 GLY 218 LYS 219 THR 220 PRO 221 PHE 222 LEU 223 ALA 224 TRP 225 CYS 226 GLU 227 GLN 228 ARG 229 GLY 230 SER 231 LYS 232 ARG 233 ASN 234 ALA 235 ASP 236 GLY 237 LEU 238 GLY 239 MET 240 LEU 241 VAL 242 ALA 243 GLN 244 ALA 245 ALA 246 HIS 247 ALA 248 PHE 249 LEU 250 LEU 251 TRP 252 HIS 253 GLY 254 VAL 255 LEU 256 PRO 257 ASP 258 VAL 259 GLU 260 PRO 261 VAL 262 ILE 263 LYS 264 GLN 265 LEU 266 GLN 267 GLU 268 GLU 269
Unit 4	MET 1 GLU 2 THR 3 TYR 4 ALA 5 VAL 6 PHE 7 GLY 8 ASN 9 PRO 10 ILE 11 ALA 12 HIS 13 SER 14 LYS 15 SER 16 PRO 17 PHE 18 ILE 19 HIS 20 GLN 21 GLN 22 PHE 23 ALA 24 GLN 25 GLN 26 LEU 27 ASN 28 ILE 29 GLU 30 HIS 31 PRO 32 TYR 33 GLY 34 ARG 35 VAL 36 LEU 37 ALA 38 PRO 39 ILE 40 ASN 41 ASP 42 PHE 43 ILE 44 ASN 45 THR 46 LEU 47 ASN 48 ALA 49 PHE 50 PHE 51 SER 52 ALA 53 GLY 54 GLY 55 LYS 56 GLY 57 ALA 58 ASN 59 VAL 60 THR 61 VAL 62 PRO 63 PHE 64 LYS 65 GLU 66 GLU 67 ALA 68 PHE 69 ALA 70 ARG 71 ALA 72 ASP 73 GLU 74 LEU 75 THR 76 GLU 77 ARG 78 ALA 79 ALA 80 LEU 81 ALA 82 GLY 83 ALA 84 VAL 85 ASN 86 THR 87 LEU 88 MET 89 ARG 90 LEU 91 GLU 92 ASP 93 GLY 94 ARG 95 LEU 96 LEU 97 GLY 98 ASP 99 ASN 100 THR 101 ASP 102 GLY 103 VAL 104 GLY 105 LEU 106 LEU 107 SER 108 ASP 109 LEU 110 GLU 111 ARG 112 LEU 113 SER 114 PHE 115 ILE 116 ARG 117 PRO 118 GLY 119 LEU 120 ARG 121 ILE 122 LEU 123 LEU 124 ILE 125 GLY 126 ALA 127 GLY 128 GLY 129 ALA 130 SER 131 ARG 132 GLY 133 VAL 134 LEU 135 LEU 136 PRO 137 LEU 138 LEU 139 SER 140 LEU 141 ASP 142 CYS 143 ALA 144 VAL 145 THR 146 ILE 147 THR 148 ASN 149 ARG 150 THR 151 VAL 152 SER 153 ARG 154 ALA 155 GLU 156 GLU 157 LEU 158 ALA 159 LYS 160 LEU 161 PHE 162 ALA 163 HIS 164 THR 165 GLY 166 SER 167 ILE 168 GLN 169 ALA 170 LEU 171 SER 172 MET 173 ASP 174 GLU 175 LEU 176 GLU 177 GLY 178 HIS 179 GLU 180 PHE 181 ASP 182 LEU 183 ILE 184 ILE 185 ASN 186 ALA 187 THR 188 SER 189 SER 190 GLY 191 ILE 192 SER 193 GLY 194 ASP 195 ILE 196 PRO 197 ALA 198 ILE 199 PRO 200 SER 201 SER 202 LEU 203 ILE 204 HIS 205 PRO 206 GLY 207 ILE 208 TYR 209 CYS 210 TYR 211 ASP 212 MET 213 PHE 214 TYR 215 GLN 216 LYS 217 GLY 218 LYS 219 THR 220 PRO 221 PHE 222 LEU 223 ALA 224 TRP 225 CYS 226 GLU 227 GLN 228 ARG 229 GLY 230 SER 231 LYS 232 ARG 233 ASN 234 ALA 235 ASP 236 GLY 237 LEU 238 GLY 239 MET 240 LEU 241 VAL 242 ALA 243 GLN 244 ALA 245 ALA 246 HIS 247 ALA 248 PHE 249 LEU 250 LEU 251 TRP 252 HIS 253 GLY 254 VAL 255 LEU 256 PRO 257 ASP 258 VAL 259 GLU 260 PRO 261 VAL 262 ILE 263 LYS 264 GLN 265 LEU 266 GLN 267 GLU 268 GLU 269 LEU 270

Ligands

Unit 5	NAP 1401 SO4 1402 SO4 1403 SO4 1404 DTV 1405 SO4 1424
Unit 6	NAP 1411 SO4 1412 SO4 1413 SO4 1414 SO4 1434
Unit 7	NAP 1421 SO4 1422 SO4 1423 SO4 1425 SO4 1426
Unit 8	NAP 1431 SO4 1432 SO4 1433