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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF STAPHYLOCOCCUS AUREUS THREONYL-TRNA SYNTHETASE COMPLEXED WITH ATP
Keywords THREONYL-TRNA SYNTHETASE, ATP, THREONINE, LIGASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1NYR     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   THREONYL-TRNA SYNTHETASE 1  A 642 5216 0
2  Protein   THREONYL-TRNA SYNTHETASE 1  B 637 5171 0
3  Protein   THREONYL-TRNA SYNTHETASE 1  A 4 0 41
4  Protein   THREONYL-TRNA SYNTHETASE 1  B 3 0 40
5 Water     216 0 216
total       1502 10387 297

Proteins
Unit 1 ILE4 ASN5 ILE6 GLN7 PHE8 PRO9 ASP10 GLY11 ASN12 LYS13 LYS14 ALA15 PHE16 ASP17 LYS18 GLY19 THR20 THR21 THR22 GLU23 ASP24 ILE25 ALA26 GLN27 SER28 ILE29 SER30 PRO31 GLY32 LEU33 ARG34 LYS35 LYS36 ALA37 VAL38 ALA39 GLY40 LYS41 PHE42 ASN43 GLY44 GLN45 LEU46 VAL47 ASP48 LEU49 THR50 LYS51 PRO52 LEU53 GLU54 THR55 ASP56 GLY57 SER58 ILE59 GLU60 ILE61 VAL62 THR63 PRO64 GLY65 SER66 GLU67 GLU68 ALA69 LEU70 GLU71 VAL72 LEU73 ARG74 HIS75 SER76 THR77 ALA78 HIS79 LEU80 MET81 ALA82 HIS83 ALA84 ILE85 LYS86 ARG87 LEU88 TYR89 GLY90 ASN91 VAL92 LYS93 PHE94 GLY95 VAL96 GLY97 PRO98 VAL99 ILE100 GLU101 GLY102 GLY103 PHE104 TYR105 TYR106 ASP107 PHE108 ASP109 ILE110 ASP111 GLN112 ASN113 ILE114 SER115 SER116 ASP117 ASP118 PHE119 GLU120 GLN121 ILE122 GLU123 LYS124 THR125 MET126 LYS127 GLN128 ILE129 VAL130 ASN131 GLU132 ASN133 MET134 LYS135 ILE136 GLU137 ARG138 LYS139 VAL140 VAL141 SER142 ARG143 ASP144 GLU145 ALA146 LYS147 GLU148 LEU149 PHE150 SER151 ASN152 ASP153 GLU154 TYR155 LYS156 LEU157 GLU158 LEU159 ILE160 ASP161 ALA162 ILE163 PRO164 GLU165 ASP166 GLU167 ASN168 VAL169 THR170 LEU171 TYR172 SER173 GLN174 GLY175 ASP176 PHE177 THR178 ASP179 LEU180 CYS181 ARG182 GLY183 VAL184 HIS185 VAL186 PRO187 SER188 THR189 ALA190 LYS191 ILE192 LYS193 GLU194 PHE195 LYS196 LEU197 LEU198 SER199 THR200 ALA201 GLY202 ALA203 TYR204 TRP205 ARG206 GLY207 ASP208 SER209 ASN210 ASN211 LYS212 MET213 LEU214 GLN215 ARG216 ILE217 TYR218 GLY219 THR220 ALA221 PHE222 PHE223 ASP224 LYS225 LYS226 GLU227 LEU228 LYS229 ALA230 HIS231 LEU232 GLN233 MET234 LEU235 GLU236 GLU237 ARG238 LYS239 GLU240 ARG241 ASP242 HIS243 ARG244 LYS245 ILE246 GLY247 LYS248 GLU249 LEU250 GLU251 LEU252 PHE253 THR254 ASN255 SER256 GLN257 LEU258 VAL259 GLY260 ALA261 GLY262 LEU263 PRO264 LEU265 TRP266 LEU267 PRO268 ASN269 GLY270 ALA271 THR272 ILE273 ARG274 ARG275 GLU276 ILE277 GLU278 ARG279 TYR280 ILE281 VAL282 ASP283 LYS284 GLU285 VAL286 SER287 MET288 GLY289 TYR290 ASP291 HIS292 VAL293 TYR294 THR295 PRO296 VAL297 LEU298 ALA299 ASN300 VAL301 ASP302 LEU303 TYR304 LYS305 THR306 SER307 GLY308 HIS309 TRP310 ASP311 HIS312 TYR313 GLN314 GLU315 ASP316 MET317 PHE318 PRO319 PRO320 MET321 GLN322 LEU323 ASP324 GLU325 THR326 GLU327 SER328 MET329 VAL330 LEU331 ARG332 PRO333 MET334 ASN335 CYS336 PRO337 HIS338 HIS339 MET340 MET341 ILE342 TYR343 ALA344 ASN345 LYS346 PRO347 HIS348 SER349 TYR350 ARG351 GLU352 LEU353 PRO354 ILE355 ARG356 ILE357 ALA358 GLU359 LEU360 GLY361 THR362 MET363 HIS364 ARG365 TYR366 GLU367 ALA368 SER369 GLY370 ALA371 VAL372 SER373 GLY374 LEU375 GLN376 ARG377 VAL378 ARG379 GLY380 MET381 THR382 LEU383 ASN384 ASP385 SER386 HIS387 ILE388 PHE389 VAL390 ARG391 PRO392 ASP393 GLN394 ILE395 LYS396 GLU397 GLU398 PHE399 LYS400 ARG401 VAL402 VAL403 ASN404 MET405 ILE406 ILE407 ASP408 VAL409 TYR410 LYS411 ASP412 PHE413 GLY414 PHE415 GLU416 ASP417 TYR418 SER419 PHE420 ARG421 LEU422 SER423 TYR424 ARG425 ASP426 PRO427 GLU428 ASP429 LYS430 GLU431 LYS432 TYR433 PHE434 ASP435 ASP436 ASP437 ASP438 MET439 TRP440 ASN441 LYS442 ALA443 GLU444 ASN445 MET446 LEU447 LYS448 GLU449 ALA450 ALA451 ASP452 GLU453 LEU454 GLY455 LEU456 SER457 TYR458 GLU459 GLU460 ALA461 ILE462 GLY463 GLU464 ALA465 ALA466 PHE467 TYR468 GLY469 PRO470 LYS471 LEU472 ASP473 VAL474 GLN475 VAL476 LYS477 THR478 ALA479 MET480 GLY481 LYS482 GLU483 GLU484 THR485 LEU486 SER487 THR488 ALA489 GLN490 LEU491 ASP492 PHE493 LEU494 LEU495 PRO496 GLU497 ARG498 PHE499 ASP500 LEU501 THR502 TYR503 ILE504 GLY505 GLN506 ASP507 GLY508 GLU509 HIS510 HIS511 ARG512 PRO513 VAL514 VAL515 ILE516 HIS517 ARG518 GLY519 VAL520 VAL521 SER522 THR523 MET524 GLU525 ARG526 PHE527 VAL528 ALA529 PHE530 LEU531 THR532 GLU533 GLU534 THR535 LYS536 GLY537 ALA538 PHE539 PRO540 THR541 TRP542 LEU543 ALA544 PRO545 LYS546 GLN547 VAL548 GLN549 ILE550 ILE551 PRO552 VAL553 ASN554 VAL555 ASP556 LEU557 HIS558 TYR559 ASP560 TYR561 ALA562 ARG563 GLN564 LEU565 GLN566 ASP567 GLU568 LEU569 LYS570 SER571 GLN572 GLY573 VAL574 ARG575 VAL576 SER577 ILE578 ASP579 ASP580 ARG581 ASN582 GLU583 LYS584 MET585 GLY586 TYR587 LYS588 ILE589 ARG590 GLU591 ALA592 GLN593 MET594 GLN595 LYS596 ILE597 PRO598 TYR599 GLN600 ILE601 VAL602 VAL603 GLY604 ASP605 LYS606 GLU607 VAL608 GLU609 ASN610 ASN611 GLN612 VAL613 ASN614 VAL615 ARG616 GLN617 TYR618 GLY619 SER620 GLN621 ASP622 GLN623 GLU624 THR625 VAL626 GLU627 LYS628 ASP629 GLU630 PHE631 ILE632 TRP633 ASN634 LEU635 VAL636 ASP637 GLU638 ILE639 ARG640 LEU641 LYS642 LYS643 HIS644 ARG645
Unit 2 MET1 GLU2 GLN3 ILE4 ASN5 ILE6 GLN7 PHE8 PRO9 ASP10 GLY11 ASN12 LYS13 LYS14 ALA15 PHE16 ASP17 LYS18 GLY19 THR20 THR21 THR22 GLU23 ASP24 ILE25 ALA26 GLN27 SER28 ILE29 SER30 PRO31 GLY32 LEU33 ARG34 LYS35 LYS36 ALA37 VAL38 ALA39 GLY40 LYS41 PHE42 ASN43 GLY44 GLN45 LEU46 VAL47 ASP48 LEU49 THR50 LYS51 PRO52 LEU53 GLU54 THR55 ASP56 GLY57 SER58 ILE59 GLU60 ILE61 VAL62 THR63 PRO64 GLY65 SER66 GLU67 GLU68 ALA69 LEU70 GLU71 VAL72 LEU73 ARG74 HIS75 SER76 THR77 ALA78 HIS79 LEU80 MET81 ALA82 HIS83 ALA84 ILE85 LYS86 ARG87 LEU88 TYR89 GLY90 ASN91 VAL92 LYS93 PHE94 GLY95 VAL96 GLY97 PRO98 VAL99 ILE100 GLU101 GLY102 GLY103 PHE104 TYR105 TYR106 ASP107 PHE108 ASP109 ILE110 ASP111 GLN112 ASN113 ILE114 SER115 SER116 ASP117 ASP118 PHE119 GLU120 GLN121 ILE122 GLU123 LYS124 THR125 MET126 LYS127 GLN128 ILE129 VAL130 ASN131 GLU132 ASN133 MET134 LYS135 ILE136 GLU137 ARG138 LYS139 VAL140 VAL141 SER142 ARG143 ASP144 GLU145 ALA146 LYS147 GLU148 LEU149 GLU158 LEU159 ILE160 ASP161 ALA162 ILE163 PRO164 GLU165 ASP166 GLU167 ASN168 VAL169 THR170 LEU171 TYR172 SER173 GLN174 GLY175 ASP176 PHE177 THR178 ASP179 LEU180 CYS181 ARG182 GLY183 VAL184 HIS185 VAL186 PRO187 SER188 THR189 ALA190 LYS191 ILE192 LYS193 GLU194 PHE195 LYS196 LEU197 LEU198 SER199 THR200 ALA201 GLY202 ALA203 TYR204 TRP205 ARG206 GLY207 ASP208 SER209 ASN210 ASN211 LYS212 MET213 LEU214 GLN215 ARG216 ILE217 TYR218 GLY219 THR220 ALA221 PHE222 PHE223 ASP224 LYS225 LYS226 GLU227 LEU228 LYS229 ALA230 HIS231 LEU232 GLN233 MET234 LEU235 GLU236 GLU237 ARG238 LYS239 GLU240 ARG241 ASP242 HIS243 ARG244 LYS245 ILE246 GLY247 LYS248 GLU249 LEU250 GLU251 LEU252 PHE253 THR254 ASN255 SER256 GLN257 LEU258 VAL259 GLY260 ALA261 GLY262 LEU263 PRO264 LEU265 TRP266 LEU267 PRO268 ASN269 GLY270 ALA271 THR272 ILE273 ARG274 ARG275 GLU276 ILE277 GLU278 ARG279 TYR280 ILE281 VAL282 ASP283 LYS284 GLU285 VAL286 SER287 MET288 GLY289 TYR290 ASP291 HIS292 VAL293 TYR294 THR295 PRO296 VAL297 LEU298 ALA299 ASN300 VAL301 ASP302 LEU303 TYR304 LYS305 THR306 SER307 GLY308 HIS309 TRP310 ASP311 HIS312 TYR313 GLN314 GLU315 ASP316 MET317 PHE318 PRO319 PRO320 MET321 GLN322 LEU323 ASP324 GLU325 THR326 GLU327 SER328 MET329 VAL330 LEU331 ARG332 PRO333 MET334 ASN335 CYS336 PRO337 HIS338 HIS339 MET340 MET341 ILE342 TYR343 ALA344 ASN345 LYS346 PRO347 HIS348 SER349 TYR350 ARG351 GLU352 LEU353 PRO354 ILE355 ARG356 ILE357 ALA358 GLU359 LEU360 GLY361 THR362 MET363 HIS364 ARG365 TYR366 GLU367 ALA368 SER369 GLY370 ALA371 VAL372 SER373 GLY374 LEU375 GLN376 ARG377 VAL378 ARG379 GLY380 MET381 THR382 LEU383 ASN384 ASP385 SER386 HIS387 ILE388 PHE389 VAL390 ARG391 PRO392 ASP393 GLN394 ILE395 LYS396 GLU397 GLU398 PHE399 LYS400 ARG401 VAL402 VAL403 ASN404 MET405 ILE406 ILE407 ASP408 VAL409 TYR410 LYS411 ASP412 PHE413 GLY414 PHE415 GLU416 ASP417 TYR418 SER419 PHE420 ARG421 LEU422 SER423 TYR424 ARG425 ASP426 PRO427 GLU428 ASP429 LYS430 GLU431 LYS432 TYR433 PHE434 ASP435 ASP436 ASP437 ASP438 MET439 TRP440 ASN441 LYS442 ALA443 GLU444 ASN445 MET446 LEU447 LYS448 GLU449 ALA450 ALA451 ASP452 GLU453 LEU454 GLY455 LEU456 SER457 TYR458 GLU459 GLU460 ALA461 ILE462 GLY463 GLU464 ALA465 ALA466 PHE467 TYR468 GLY469 PRO470 LYS471 LEU472 ASP473 VAL474 GLN475 VAL476 LYS477 THR478 ALA479 MET480 GLY481 LYS482 GLU483 GLU484 THR485 LEU486 SER487 THR488 ALA489 GLN490 LEU491 ASP492 PHE493 LEU494 LEU495 PRO496 GLU497 ARG498 PHE499 ASP500 LEU501 THR502 TYR503 ILE504 GLY505 GLN506 ASP507 GLY508 GLU509 HIS510 HIS511 ARG512 PRO513 VAL514 VAL515 ILE516 HIS517 ARG518 GLY519 VAL520 VAL521 SER522 THR523 MET524 GLU525 ARG526 PHE527 VAL528 ALA529 PHE530 LEU531 THR532 GLU533 GLU534 THR535 LYS536 GLY537 ALA538 PHE539 PRO540 THR541 TRP542 LEU543 ALA544 PRO545 LYS546 GLN547 VAL548 GLN549 ILE550 ILE551 PRO552 VAL553 ASN554 VAL555 ASP556 LEU557 HIS558 TYR559 ASP560 TYR561 ALA562 ARG563 GLN564 LEU565 GLN566 ASP567 GLU568 LEU569 LYS570 SER571 GLN572 GLY573 VAL574 ARG575 VAL576 SER577 ILE578 ASP579 ASP580 ARG581 ASN582 GLU583 LYS584 MET585 GLY586 TYR587 LYS588 ILE589 ARG590 GLU591 ALA592 GLN593 MET594 GLN595 LYS596 ILE597 PRO598 TYR599 GLN600 ILE601 VAL602 VAL603 GLY604 ASP605 LYS606 GLU607 VAL608 GLU609 ASN610 ASN611 GLN612 VAL613 ASN614 VAL615 ARG616 GLN617 TYR618 GLY619 SER620 GLN621 ASP622 GLN623 GLU624 THR625 VAL626 GLU627 LYS628 ASP629 GLU630 PHE631 ILE632 TRP633 ASN634 LEU635 VAL636 ASP637 GLU638 ILE639 ARG640 LEU641 LYS642 LYS643 HIS644 ARG645
Unit 3 ZN1001 ZN1002 ATP1003 THR1004
Unit 4 ZN2001 ATP2003 THR2004

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany