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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURE OF NM23 HUMAN NUCLEOSIDE DIPHOSPHATE KINASE B COMPLEXED WITH GDP AT 2 ANGSTROMS RESOLUTION
Keywords NUCLEOSIDE TRIPHOSPHATE, NUCLEOSIDE DIPHOSPHATE, PHOSPHOTRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1NUE     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  A 151 1209 0
2  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  B 151 1209 0
3  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  C 151 1209 0
4  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  D 151 1209 0
5  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  E 151 1209 0
6  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  F 151 1209 0
7  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  A 2 0 29
8  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  B 1 0 28
9  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  C 2 0 29
10  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  D 1 0 28
11  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  E 1 0 28
12  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  F 1 0 28
13 Water     334 0 334
total       1248 7254 504

Proteins
Unit 1 ALA2 ASN3 LEU4 GLU5 ARG6 THR7 PHE8 ILE9 ALA10 ILE11 LYS12 PRO13 ASP14 GLY15 VAL16 GLN17 ARG18 GLY19 LEU20 VAL21 GLY22 GLU23 ILE24 ILE25 LYS26 ARG27 PHE28 GLU29 GLN30 LYS31 GLY32 PHE33 ARG34 LEU35 VAL36 ALA37 MET38 LYS39 PHE40 LEU41 ARG42 ALA43 SER44 GLU45 GLU46 HIS47 LEU48 LYS49 GLN50 HIS51 TYR52 ILE53 ASP54 LEU55 LYS56 ASP57 ARG58 PRO59 PHE60 PHE61 PRO62 GLY63 LEU64 VAL65 LYS66 TYR67 MET68 ASN69 SER70 GLY71 PRO72 VAL73 VAL74 ALA75 MET76 VAL77 TRP78 GLU79 GLY80 LEU81 ASN82 VAL83 VAL84 LYS85 THR86 GLY87 ARG88 VAL89 MET90 LEU91 GLY92 GLU93 THR94 ASN95 PRO96 ALA97 ASP98 SER99 LYS100 PRO101 GLY102 THR103 ILE104 ARG105 GLY106 ASP107 PHE108 CYS109 ILE110 GLN111 VAL112 GLY113 ARG114 ASN115 ILE116 ILE117 HIS118 GLY119 SER120 ASP121 SER122 VAL123 LYS124 SER125 ALA126 GLU127 LYS128 GLU129 ILE130 SER131 LEU132 TRP133 PHE134 LYS135 PRO136 GLU137 GLU138 LEU139 VAL140 ASP141 TYR142 LYS143 SER144 CYS145 ALA146 HIS147 ASP148 TRP149 VAL150 TYR151 GLU152
Unit 2 ALA2 ASN3 LEU4 GLU5 ARG6 THR7 PHE8 ILE9 ALA10 ILE11 LYS12 PRO13 ASP14 GLY15 VAL16 GLN17 ARG18 GLY19 LEU20 VAL21 GLY22 GLU23 ILE24 ILE25 LYS26 ARG27 PHE28 GLU29 GLN30 LYS31 GLY32 PHE33 ARG34 LEU35 VAL36 ALA37 MET38 LYS39 PHE40 LEU41 ARG42 ALA43 SER44 GLU45 GLU46 HIS47 LEU48 LYS49 GLN50 HIS51 TYR52 ILE53 ASP54 LEU55 LYS56 ASP57 ARG58 PRO59 PHE60 PHE61 PRO62 GLY63 LEU64 VAL65 LYS66 TYR67 MET68 ASN69 SER70 GLY71 PRO72 VAL73 VAL74 ALA75 MET76 VAL77 TRP78 GLU79 GLY80 LEU81 ASN82 VAL83 VAL84 LYS85 THR86 GLY87 ARG88 VAL89 MET90 LEU91 GLY92 GLU93 THR94 ASN95 PRO96 ALA97 ASP98 SER99 LYS100 PRO101 GLY102 THR103 ILE104 ARG105 GLY106 ASP107 PHE108 CYS109 ILE110 GLN111 VAL112 GLY113 ARG114 ASN115 ILE116 ILE117 HIS118 GLY119 SER120 ASP121 SER122 VAL123 LYS124 SER125 ALA126 GLU127 LYS128 GLU129 ILE130 SER131 LEU132 TRP133 PHE134 LYS135 PRO136 GLU137 GLU138 LEU139 VAL140 ASP141 TYR142 LYS143 SER144 CYS145 ALA146 HIS147 ASP148 TRP149 VAL150 TYR151 GLU152
Unit 3 ALA2 ASN3 LEU4 GLU5 ARG6 THR7 PHE8 ILE9 ALA10 ILE11 LYS12 PRO13 ASP14 GLY15 VAL16 GLN17 ARG18 GLY19 LEU20 VAL21 GLY22 GLU23 ILE24 ILE25 LYS26 ARG27 PHE28 GLU29 GLN30 LYS31 GLY32 PHE33 ARG34 LEU35 VAL36 ALA37 MET38 LYS39 PHE40 LEU41 ARG42 ALA43 SER44 GLU45 GLU46 HIS47 LEU48 LYS49 GLN50 HIS51 TYR52 ILE53 ASP54 LEU55 LYS56 ASP57 ARG58 PRO59 PHE60 PHE61 PRO62 GLY63 LEU64 VAL65 LYS66 TYR67 MET68 ASN69 SER70 GLY71 PRO72 VAL73 VAL74 ALA75 MET76 VAL77 TRP78 GLU79 GLY80 LEU81 ASN82 VAL83 VAL84 LYS85 THR86 GLY87 ARG88 VAL89 MET90 LEU91 GLY92 GLU93 THR94 ASN95 PRO96 ALA97 ASP98 SER99 LYS100 PRO101 GLY102 THR103 ILE104 ARG105 GLY106 ASP107 PHE108 CYS109 ILE110 GLN111 VAL112 GLY113 ARG114 ASN115 ILE116 ILE117 HIS118 GLY119 SER120 ASP121 SER122 VAL123 LYS124 SER125 ALA126 GLU127 LYS128 GLU129 ILE130 SER131 LEU132 TRP133 PHE134 LYS135 PRO136 GLU137 GLU138 LEU139 VAL140 ASP141 TYR142 LYS143 SER144 CYS145 ALA146 HIS147 ASP148 TRP149 VAL150 TYR151 GLU152
Unit 4 ALA2 ASN3 LEU4 GLU5 ARG6 THR7 PHE8 ILE9 ALA10 ILE11 LYS12 PRO13 ASP14 GLY15 VAL16 GLN17 ARG18 GLY19 LEU20 VAL21 GLY22 GLU23 ILE24 ILE25 LYS26 ARG27 PHE28 GLU29 GLN30 LYS31 GLY32 PHE33 ARG34 LEU35 VAL36 ALA37 MET38 LYS39 PHE40 LEU41 ARG42 ALA43 SER44 GLU45 GLU46 HIS47 LEU48 LYS49 GLN50 HIS51 TYR52 ILE53 ASP54 LEU55 LYS56 ASP57 ARG58 PRO59 PHE60 PHE61 PRO62 GLY63 LEU64 VAL65 LYS66 TYR67 MET68 ASN69 SER70 GLY71 PRO72 VAL73 VAL74 ALA75 MET76 VAL77 TRP78 GLU79 GLY80 LEU81 ASN82 VAL83 VAL84 LYS85 THR86 GLY87 ARG88 VAL89 MET90 LEU91 GLY92 GLU93 THR94 ASN95 PRO96 ALA97 ASP98 SER99 LYS100 PRO101 GLY102 THR103 ILE104 ARG105 GLY106 ASP107 PHE108 CYS109 ILE110 GLN111 VAL112 GLY113 ARG114 ASN115 ILE116 ILE117 HIS118 GLY119 SER120 ASP121 SER122 VAL123 LYS124 SER125 ALA126 GLU127 LYS128 GLU129 ILE130 SER131 LEU132 TRP133 PHE134 LYS135 PRO136 GLU137 GLU138 LEU139 VAL140 ASP141 TYR142 LYS143 SER144 CYS145 ALA146 HIS147 ASP148 TRP149 VAL150 TYR151 GLU152
Unit 5 ALA2 ASN3 LEU4 GLU5 ARG6 THR7 PHE8 ILE9 ALA10 ILE11 LYS12 PRO13 ASP14 GLY15 VAL16 GLN17 ARG18 GLY19 LEU20 VAL21 GLY22 GLU23 ILE24 ILE25 LYS26 ARG27 PHE28 GLU29 GLN30 LYS31 GLY32 PHE33 ARG34 LEU35 VAL36 ALA37 MET38 LYS39 PHE40 LEU41 ARG42 ALA43 SER44 GLU45 GLU46 HIS47 LEU48 LYS49 GLN50 HIS51 TYR52 ILE53 ASP54 LEU55 LYS56 ASP57 ARG58 PRO59 PHE60 PHE61 PRO62 GLY63 LEU64 VAL65 LYS66 TYR67 MET68 ASN69 SER70 GLY71 PRO72 VAL73 VAL74 ALA75 MET76 VAL77 TRP78 GLU79 GLY80 LEU81 ASN82 VAL83 VAL84 LYS85 THR86 GLY87 ARG88 VAL89 MET90 LEU91 GLY92 GLU93 THR94 ASN95 PRO96 ALA97 ASP98 SER99 LYS100 PRO101 GLY102 THR103 ILE104 ARG105 GLY106 ASP107 PHE108 CYS109 ILE110 GLN111 VAL112 GLY113 ARG114 ASN115 ILE116 ILE117 HIS118 GLY119 SER120 ASP121 SER122 VAL123 LYS124 SER125 ALA126 GLU127 LYS128 GLU129 ILE130 SER131 LEU132 TRP133 PHE134 LYS135 PRO136 GLU137 GLU138 LEU139 VAL140 ASP141 TYR142 LYS143 SER144 CYS145 ALA146 HIS147 ASP148 TRP149 VAL150 TYR151 GLU152
Unit 6 ALA2 ASN3 LEU4 GLU5 ARG6 THR7 PHE8 ILE9 ALA10 ILE11 LYS12 PRO13 ASP14 GLY15 VAL16 GLN17 ARG18 GLY19 LEU20 VAL21 GLY22 GLU23 ILE24 ILE25 LYS26 ARG27 PHE28 GLU29 GLN30 LYS31 GLY32 PHE33 ARG34 LEU35 VAL36 ALA37 MET38 LYS39 PHE40 LEU41 ARG42 ALA43 SER44 GLU45 GLU46 HIS47 LEU48 LYS49 GLN50 HIS51 TYR52 ILE53 ASP54 LEU55 LYS56 ASP57 ARG58 PRO59 PHE60 PHE61 PRO62 GLY63 LEU64 VAL65 LYS66 TYR67 MET68 ASN69 SER70 GLY71 PRO72 VAL73 VAL74 ALA75 MET76 VAL77 TRP78 GLU79 GLY80 LEU81 ASN82 VAL83 VAL84 LYS85 THR86 GLY87 ARG88 VAL89 MET90 LEU91 GLY92 GLU93 THR94 ASN95 PRO96 ALA97 ASP98 SER99 LYS100 PRO101 GLY102 THR103 ILE104 ARG105 GLY106 ASP107 PHE108 CYS109 ILE110 GLN111 VAL112 GLY113 ARG114 ASN115 ILE116 ILE117 HIS118 GLY119 SER120 ASP121 SER122 VAL123 LYS124 SER125 ALA126 GLU127 LYS128 GLU129 ILE130 SER131 LEU132 TRP133 PHE134 LYS135 PRO136 GLU137 GLU138 LEU139 VAL140 ASP141 TYR142 LYS143 SER144 CYS145 ALA146 HIS147 ASP148 TRP149 VAL150 TYR151 GLU152

Ligands
Unit 7 GDP160 MG161
Unit 8 GDP160
Unit 9 GDP160 MG161
Unit 10 GDP160
Unit 11 GDP160
Unit 12 GDP160

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany