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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE LARGE PROTEASE RESISTANT UPPER DOMAIN OF VP5, THE MAJOR CAPSID PROTEIN OF HERPES SIMPLEX VIRUS-1
Keywords NOVEL FOLD, ALPHA PLUS BETA, VIRAL CAPSID PROTEIN, FOLDING NUCLEUS, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1NO7     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MAJOR CAPSID PROTEIN  A 542 4121 0
2  Protein   MAJOR CAPSID PROTEIN  B 534 4058 0
total       1076 8179 0
Proteins
Unit 1 ALA484 ASN485 PRO486 TYR487 GLY488 ALA489 TYR490 VAL491 ALA492 ALA493 PRO494 ALA495 GLY496 PRO497 ALA498 ALA499 ASP500 MET501 GLN502 GLN503 LEU504 PHE505 LEU506 ASN507 ALA508 TRP509 GLY510 GLN511 ARG512 LEU513 ALA514 HIS515 GLY516 ARG517 VAL518 ARG519 TRP520 VAL521 ALA522 ALA540 LEU541 GLU542 LEU543 HIS544 PRO545 ALA546 PHE547 ASP548 PHE549 PHE550 VAL551 GLY552 VAL553 ALA554 ASP555 VAL556 GLU557 LEU558 PRO559 GLY560 GLY561 ASP562 VAL563 PRO564 PRO565 ALA566 GLY567 PRO568 GLY569 GLU570 ILE571 GLN572 ALA573 THR574 TRP575 ARG576 VAL577 VAL578 ASN579 GLY580 ASN581 LEU582 PRO583 LEU584 ALA585 LEU586 CYS587 PRO588 ALA589 ALA590 PHE591 ARG592 ASP593 ALA594 ARG595 GLY596 LEU597 GLU598 LEU599 GLY600 VAL601 GLY602 ARG603 HIS604 ALA605 MET606 ALA607 PRO608 ALA609 THR610 ILE611 ALA612 ALA613 VAL614 ARG615 GLY616 ALA617 PHE618 ASP619 ASP620 ARG621 ASN622 TYR623 PRO624 ALA625 VAL626 PHE627 TYR628 LEU629 LEU630 GLN631 ALA632 ALA633 ILE634 HIS635 GLY636 SER637 GLU638 HIS639 VAL640 PHE641 CYS642 ALA643 LEU644 ALA645 ARG646 LEU647 VAL648 VAL649 GLN650 CYS651 ILE652 THR653 SER654 TYR655 TRP656 ASN657 ASN658 THR659 ARG660 CYS661 ALA662 ALA663 PHE664 VAL665 ASN666 ASP667 TYR668 SER669 LEU670 VAL671 SER672 TYR673 VAL674 VAL675 THR676 TYR677 LEU678 GLY679 GLY680 ASP681 LEU682 PRO683 GLU684 GLU685 CYS686 MET687 ALA688 VAL689 TYR690 ARG691 ASP692 LEU693 VAL694 ALA695 HIS696 VAL697 GLU698 ALA699 LEU700 ALA701 GLN702 LEU703 VAL704 ASP705 ASP706 PHE707 THR708 LEU709 THR710 GLY711 PRO712 GLU713 LEU714 GLY715 GLY716 GLN717 ALA718 GLN719 ALA720 GLU721 LEU722 ASN723 HIS724 LEU725 MET726 ARG727 ASP728 PRO729 ALA730 LEU731 LEU732 PRO733 PRO734 LEU735 VAL736 TRP737 ASP738 CYS739 ASP740 ALA741 LEU742 MET743 ARG744 ARG745 ALA746 ALA747 LEU748 ASP749 ARG750 HIS751 ARG752 ASP753 CYS754 ARG755 VAL756 SER757 ALA758 GLY759 GLY760 HIS761 ASP762 PRO763 VAL764 TYR765 ALA766 ALA767 ALA768 CYS769 ASN770 VAL771 ALA772 THR773 ALA774 ASP775 PHE776 ASN777 ARG778 ASN779 ASP780 GLY781 GLN782 LEU783 LEU784 HIS785 ASN786 THR787 GLN788 ALA789 ARG790 ALA791 ALA792 ASP793 ALA794 ALA795 ASP796 ASP797 ARG798 PRO799 HIS800 ARG801 GLY802 ALA803 ASP804 TRP805 THR806 VAL807 HIS808 HIS809 LYS810 ILE811 TYR812 TYR813 TYR814 VAL815 MET816 VAL817 PRO818 ALA819 PHE820 SER821 ARG822 GLY823 ARG824 CYS825 CYS826 THR827 ALA828 GLY829 VAL830 ARG831 PHE832 ASP833 ARG834 VAL835 TYR836 ALA837 THR838 LEU839 GLN840 ASN841 MET842 VAL843 VAL844 PRO845 GLU846 ILE847 ALA848 PRO849 GLY850 GLU851 GLU852 CYS853 PRO854 SER855 ASP856 PRO857 VAL858 THR859 ASP860 PRO861 ALA862 HIS863 PRO864 LEU865 HIS866 PRO867 ALA868 ASN869 LEU870 VAL871 ALA872 ASN873 THR874 VAL875 ASN876 ALA877 MET878 PHE879 HIS880 ASN881 GLY882 ARG883 VAL884 VAL885 VAL886 ASP887 GLY888 PRO889 ALA890 MET891 LEU892 THR893 LEU894 GLN895 VAL896 LEU897 ALA898 HIS899 ASN900 MET901 ALA902 GLU903 ARG904 THR905 THR906 ALA907 LEU908 LEU909 CYS910 SER911 ALA912 ALA913 PRO914 ASP915 ALA916 GLY917 ALA918 ASN919 THR920 ALA921 ASN925 MET926 ARG927 ILE928 PHE929 ASP930 GLY931 ALA932 LEU933 HIS934 ALA935 GLY936 ILE937 LEU938 LEU939 MET940 ALA941 PRO942 GLN943 HIS944 LEU945 ASP946 HIS947 THR948 ILE949 GLN950 ASN951 GLY952 ASP953 TYR954 PHE955 TYR956 PRO957 LEU958 PRO959 VAL960 HIS961 ALA962 LEU963 PHE964 ALA965 GLY966 ALA967 ASP968 HIS969 VAL970 ALA971 ASN972 ALA973 PRO974 ASN975 PHE976 PRO977 PRO978 ALA979 LEU980 ARG981 ASP982 LEU983 SER984 ARG985 GLN986 VAL987 PRO988 LEU989 VAL990 PRO991 PRO992 ALA993 LEU994 GLY995 ALA996 ASN997 TYR998 PHE999 SER1000 SER1001 ILE1002 ARG1003 GLN1004 PRO1005 VAL1006 VAL1007 GLN1008 HIS1009 VAL1010 ARG1011 GLU1012 SER1013 ALA1014 ALA1015 GLY1016 GLU1017 ASN1018 ALA1019 LEU1020 THR1021 TYR1022 ALA1023 LEU1024 MET1025 ALA1026 GLY1027 TYR1028 PHE1029 LYS1030 ILE1031 SER1032 PRO1033 VAL1034 ALA1035 LEU1036 HIS1037 HIS1038 GLN1039 LEU1040 LYS1041 THR1042 GLY1043 LEU1044 HIS1045
Unit 2 ALA484 ASN485 PRO486 TYR487 GLY488 ALA489 TYR490 VAL491 ALA492 ALA493 PRO494 ALA495 GLY496 PRO497 ALA498 ALA499 ASP500 MET501 GLN502 GLN503 LEU504 PHE505 LEU506 ASN507 ALA508 TRP509 GLY510 GLN511 ARG512 LEU513 ALA514 HIS515 GLY516 ARG517 VAL518 ARG519 TRP520 VAL521 ALA522 LEU539 ALA540 LEU541 GLU542 LEU543 HIS544 PRO545 ALA546 PHE547 ASP548 PHE549 PHE550 VAL551 GLY552 VAL553 ALA554 ASP555 VAL556 GLU557 LEU558 PRO559 GLY560 GLY561 ASP562 VAL563 PRO564 PRO565 ALA566 GLY567 PRO568 GLY569 GLU570 ILE571 GLN572 ALA573 THR574 TRP575 ARG576 VAL577 VAL578 ASN579 GLY580 ASN581 LEU582 PRO583 LEU584 ALA585 LEU586 CYS587 PRO588 ALA589 ALA590 PHE591 ARG592 ASP593 ALA594 ARG595 GLY596 LEU597 GLU598 LEU599 GLY600 VAL601 GLY602 ARG603 HIS604 ALA605 MET606 ALA607 PRO608 ALA609 THR610 ILE611 ALA612 ALA613 VAL614 ARG615 GLY616 ALA617 PHE618 ASP619 ASP620 ARG621 ASN622 TYR623 PRO624 ALA625 VAL626 PHE627 TYR628 LEU629 LEU630 GLN631 ALA632 ALA633 ILE634 HIS635 GLY636 SER637 GLU638 HIS639 VAL640 PHE641 CYS642 ALA643 LEU644 ALA645 ARG646 LEU647 VAL648 VAL649 GLN650 CYS651 ILE652 THR653 SER654 TYR655 TRP656 ASN657 ASN658 THR659 ARG660 CYS661 ALA662 ALA663 PHE664 VAL665 ASN666 ASP667 TYR668 SER669 LEU670 VAL671 SER672 TYR673 VAL674 VAL675 THR676 TYR677 LEU678 GLY679 GLY680 ASP681 LEU682 PRO683 GLU684 GLU685 CYS686 MET687 ALA688 VAL689 TYR690 ARG691 ASP692 LEU693 VAL694 ALA695 HIS696 VAL697 GLU698 ALA699 LEU700 ALA701 GLN702 LEU703 VAL704 ASP705 ASP706 PHE707 THR708 LEU709 THR710 GLY711 PRO712 GLU713 LEU714 GLY715 GLY716 GLN717 ALA718 GLN719 ALA720 GLU721 LEU722 ASN723 HIS724 LEU725 MET726 ARG727 ASP728 PRO729 ALA730 LEU731 LEU732 PRO733 PRO734 LEU735 VAL736 TRP737 ASP738 CYS739 ASP740 ALA741 LEU742 MET743 ARG744 ARG745 ALA746 ALA747 LEU748 ASP749 ARG750 HIS751 ARG752 ASP753 CYS754 ARG755 VAL756 SER757 ALA758 GLY759 GLY760 HIS761 ASP762 PRO763 VAL764 TYR765 ALA766 ALA767 ALA768 CYS769 ASN770 VAL771 ALA772 THR773 ALA774 ASP775 PHE776 ASN777 ARG778 ASN779 ASP780 GLY781 GLN782 LEU783 LEU784 HIS785 ASN786 THR787 GLN788 ALA789 ARG790 ALA791 ALA792 ASP793 ALA794 ALA795 ASP796 ASP797 ARG798 PRO799 HIS800 ARG801 GLY802 ALA803 ASP804 TRP805 THR806 VAL807 HIS808 HIS809 LYS810 ILE811 TYR812 TYR813 TYR814 VAL815 MET816 VAL817 PRO818 ALA819 PHE820 SER821 ARG822 GLY823 ARG824 CYS825 CYS826 THR827 ALA828 GLY829 VAL830 ARG831 PHE832 ASP833 ARG834 VAL835 TYR836 ALA837 THR838 LEU839 GLN840 ASN841 MET842 VAL843 VAL844 PRO845 GLU846 ILE847 ALA848 PRO849 GLY850 GLU851 GLU852 CYS853 PRO854 SER855 ASP856 PRO857 VAL858 THR859 ASP860 PRO861 ALA862 HIS863 PRO864 LEU865 HIS866 PRO867 ALA868 ASN869 LEU870 VAL871 ALA872 ASN873 THR874 VAL875 ASN876 ALA877 MET878 PHE879 HIS880 ASN881 GLY882 ARG883 VAL884 VAL885 VAL886 ASP887 GLY888 PRO889 ALA890 MET891 LEU892 THR893 LEU894 GLN895 VAL896 LEU897 ALA898 HIS899 ASN900 MET901 ALA902 GLU903 ARG904 THR905 THR906 ALA907 LEU908 LEU909 CYS910 SER911 ALA912 ALA913 PRO914 ASP915 ALA916 GLY917 THR920 ALA921 ASN925 MET926 ARG927 ILE928 PHE929 ASP930 GLY931 ALA932 LEU933 HIS934 ALA935 GLY936 ILE937 LEU938 LEU939 MET940 ALA941 PRO942 GLN943 HIS944 GLY952 ASP953 TYR954 PHE955 TYR956 PRO957 LEU958 PRO959 VAL960 HIS961 ALA962 LEU963 PHE964 ALA965 GLY966 ALA967 ASP968 HIS969 VAL970 ALA971 ASN972 ALA973 PRO974 ASN975 PHE976 PRO977 PRO978 ALA979 LEU980 ARG981 ASP982 LEU983 SER984 ARG985 GLN986 VAL987 PRO988 LEU989 VAL990 PRO991 PRO992 ALA993 LEU994 GLY995 ALA996 ASN997 TYR998 PHE999 SER1000 SER1001 ILE1002 ARG1003 GLN1004 PRO1005 VAL1006 VAL1007 GLN1008 HIS1009 VAL1010 ARG1011 GLU1012 SER1013 ALA1014 ALA1015 GLY1016 GLU1017 ASN1018 ALA1019 LEU1020 THR1021 TYR1022 ALA1023 LEU1024 MET1025 ALA1026 GLY1027 TYR1028 PHE1029 LYS1030 ILE1031 SER1032 PRO1033 VAL1034 ALA1035 LEU1036 HIS1037 HIS1038 GLN1039 LEU1040 LYS1041 THR1042 GLY1043 LEU1044 HIS1045
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany