1NJT - Sequence, Chains, Asymmetric and Biological Units

• Title: COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHI
• Keywords: PROTEASE, PEPTIDOMIMETIC INHIBITOR, INDUCED-FIT, HYDROLASE-H INHIBITOR COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1NJT	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CAPSID PROTEIN P40	A	226	1773	0
2	Protein	CAPSID PROTEIN P40	B	227	1782	0
3	Protein	CAPSID PROTEIN P40	C	222	1741	0
4	Protein	CAPSID PROTEIN P40	D	223	1745	0
5	Protein	PEPTIDOMIMETIC INHIBITOR	E	6	12	27
6	Protein	PEPTIDOMIMETIC INHIBITOR	F	6	12	27
7	Protein	PEPTIDOMIMETIC INHIBITOR	G	6	12	27
8	Protein	PEPTIDOMIMETIC INHIBITOR	H	6	12	27
9	Ligand	CAPSID PROTEIN P40	A	1	0	1
10	Ligand	CAPSID PROTEIN P40	B	1	0	1
11	Ligand	CAPSID PROTEIN P40	C	1	0	1
12	Ligand	CAPSID PROTEIN P40	D	1	0	1
13	Water			243	0	243
total				1169	7089	355

Proteins

Unit 1	MET 3 ASP 4 GLU 5 GLN 6 GLN 7 SER 8 GLN 9 ALA 10 VAL 11 ALA 12 PRO 13 VAL 14 TYR 15 VAL 16 GLY 17 GLY 18 PHE 19 LEU 20 ALA 21 ARG 22 TYR 23 ASP 24 GLN 25 SER 26 PRO 27 ASP 28 GLU 29 ALA 30 GLU 31 LEU 32 LEU 33 LEU 34 PRO 35 ARG 36 ASP 37 VAL 38 VAL 39 GLU 40 HIS 41 TRP 42 LEU 43 HIS 44 ALA 45 GLN 46 VAL 55 ALA 56 LEU 57 PRO 58 LEU 59 ASN 60 ILE 61 ASN 62 HIS 63 ASP 64 ASP 65 THR 66 ALA 67 VAL 68 VAL 69 GLY 70 HIS 71 VAL 72 ALA 73 ALA 74 MET 75 GLN 76 SER 77 VAL 78 ARG 79 ASP 80 GLY 81 LEU 82 PHE 83 CYS 84 LEU 85 GLY 86 CYS 87 VAL 88 THR 89 SER 90 PRO 91 ARG 92 PHE 93 LEU 94 GLU 95 ILE 96 VAL 97 ARG 98 ARG 99 ALA 100 SER 101 GLU 102 LYS 103 SER 104 GLU 105 LEU 106 VAL 107 SER 108 ARG 109 GLY 110 PRO 111 VAL 112 SER 113 PRO 114 LEU 115 GLN 116 PRO 117 ASP 118 LYS 119 VAL 120 VAL 121 GLU 122 PHE 123 LEU 124 SER 125 GLY 126 SER 127 TYR 128 ALA 129 GLY 130 LEU 131 SER 132 LEU 133 SER 134 SER 135 ARG 136 ARG 137 CYS 138 ASP 139 THR 153 PRO 154 PHE 155 LYS 156 HIS 157 VAL 158 ALA 159 LEU 160 CYS 161 SER 162 VAL 163 GLY 164 ARG 165 ARG 166 ARG 167 GLY 168 THR 169 LEU 170 ALA 171 VAL 172 TYR 173 GLY 174 ARG 175 ASP 176 PRO 177 GLU 178 TRP 179 VAL 180 THR 181 GLN 182 ARG 183 PHE 184 PRO 185 ASP 186 LEU 187 THR 188 ALA 189 ALA 190 ASP 191 ARG 192 ASP 193 GLY 194 LEU 195 ARG 196 ALA 197 GLN 198 TRP 199 GLN 200 ARG 201 CYS 202 GLY 203 GLY 211 ASP 212 PRO 213 PHE 214 ARG 215 SER 216 ASP 217 SER 218 TYR 219 GLY 220 LEU 221 LEU 222 GLY 223 ASN 224 SER 225 VAL 226 ASP 227 ALA 228 LEU 229 TYR 230 ILE 231 ARG 232 GLU 233 ARG 234 LEU 235 PRO 236 LYS 237 LEU 238 ARG 239 TYR 240 ASP 241 LYS 242 GLN 243 LEU 244 VAL 245 GLY 246 VAL 247 THR 248 GLU 249 ARG 250 GLU 251 SER 252 TYR 253 VAL 254 LYS 255 ALA 256
Unit 2	THR 302 MET 303 ASP 304 GLU 305 GLN 306 GLN 307 SER 308 GLN 309 ALA 310 VAL 311 ALA 312 PRO 313 VAL 314 TYR 315 VAL 316 GLY 317 GLY 318 PHE 319 LEU 320 ALA 321 ARG 322 TYR 323 ASP 324 GLN 325 SER 326 PRO 327 ASP 328 GLU 329 ALA 330 GLU 331 LEU 332 LEU 333 LEU 334 PRO 335 ARG 336 ASP 337 VAL 338 VAL 339 GLU 340 HIS 341 TRP 342 LEU 343 HIS 344 ALA 345 GLN 346 ALA 356 LEU 357 PRO 358 LEU 359 ASN 360 ILE 361 ASN 362 HIS 363 ASP 364 ASP 365 THR 366 ALA 367 VAL 368 VAL 369 GLY 370 HIS 371 VAL 372 ALA 373 ALA 374 MET 375 GLN 376 SER 377 VAL 378 ARG 379 ASP 380 GLY 381 LEU 382 PHE 383 CYS 384 LEU 385 GLY 386 CYS 387 VAL 388 THR 389 SER 390 PRO 391 ARG 392 PHE 393 LEU 394 GLU 395 ILE 396 VAL 397 ARG 398 ARG 399 ALA 400 SER 401 GLU 402 LYS 403 SER 404 GLU 405 LEU 406 VAL 407 SER 408 ARG 409 GLY 410 PRO 411 VAL 412 SER 413 PRO 414 LEU 415 GLN 416 PRO 417 ASP 418 LYS 419 VAL 420 VAL 421 GLU 422 PHE 423 LEU 424 SER 425 GLY 426 SER 427 TYR 428 ALA 429 GLY 430 LEU 431 SER 432 LEU 433 SER 434 SER 435 ARG 436 ARG 437 CYS 438 ASP 439 THR 452 THR 453 PRO 454 PHE 455 LYS 456 HIS 457 VAL 458 ALA 459 LEU 460 CYS 461 SER 462 VAL 463 GLY 464 ARG 465 ARG 466 ARG 467 GLY 468 THR 469 LEU 470 ALA 471 VAL 472 TYR 473 GLY 474 ARG 475 ASP 476 PRO 477 GLU 478 TRP 479 VAL 480 THR 481 GLN 482 ARG 483 PHE 484 PRO 485 ASP 486 LEU 487 THR 488 ALA 489 ALA 490 ASP 491 ARG 492 ASP 493 GLY 494 LEU 495 ARG 496 ALA 497 GLN 498 TRP 499 GLN 500 ARG 501 CYS 502 SER 510 GLY 511 ASP 512 PRO 513 PHE 514 ARG 515 SER 516 ASP 517 SER 518 TYR 519 GLY 520 LEU 521 LEU 522 GLY 523 ASN 524 SER 525 VAL 526 ASP 527 ALA 528 LEU 529 TYR 530 ILE 531 ARG 532 GLU 533 ARG 534 LEU 535 PRO 536 LYS 537 LEU 538 ARG 539 TYR 540 ASP 541 LYS 542 GLN 543 LEU 544 VAL 545 GLY 546 VAL 547 THR 548 GLU 549 ARG 550 GLU 551 SER 552 TYR 553 VAL 554 LYS 555 ALA 556
Unit 3	ASP 1004 GLU 1005 GLN 1006 GLN 1007 SER 1008 GLN 1009 ALA 1010 VAL 1011 ALA 1012 PRO 1013 VAL 1014 TYR 1015 VAL 1016 GLY 1017 GLY 1018 PHE 1019 LEU 1020 ALA 1021 ARG 1022 TYR 1023 ASP 1024 GLN 1025 SER 1026 PRO 1027 ASP 1028 GLU 1029 ALA 1030 GLU 1031 LEU 1032 LEU 1033 LEU 1034 PRO 1035 ARG 1036 ASP 1037 VAL 1038 VAL 1039 GLU 1040 HIS 1041 TRP 1042 LEU 1043 HIS 1044 ALA 1045 ALA 1056 LEU 1057 PRO 1058 LEU 1059 ASN 1060 ILE 1061 ASN 1062 HIS 1063 ASP 1064 ASP 1065 THR 1066 ALA 1067 VAL 1068 VAL 1069 GLY 1070 HIS 1071 VAL 1072 ALA 1073 ALA 1074 MET 1075 GLN 1076 SER 1077 VAL 1078 ARG 1079 ASP 1080 GLY 1081 LEU 1082 PHE 1083 CYS 1084 LEU 1085 GLY 1086 CYS 1087 VAL 1088 THR 1089 SER 1090 PRO 1091 ARG 1092 PHE 1093 LEU 1094 GLU 1095 ILE 1096 VAL 1097 ARG 1098 ARG 1099 ALA 1100 SER 1101 GLU 1102 LYS 1103 SER 1104 GLU 1105 LEU 1106 VAL 1107 SER 1108 ARG 1109 GLY 1110 PRO 1111 VAL 1112 SER 1113 PRO 1114 LEU 1115 GLN 1116 PRO 1117 ASP 1118 LYS 1119 VAL 1120 VAL 1121 GLU 1122 PHE 1123 LEU 1124 SER 1125 GLY 1126 SER 1127 TYR 1128 ALA 1129 GLY 1130 LEU 1131 SER 1132 LEU 1133 SER 1134 SER 1135 ARG 1136 ARG 1137 CYS 1138 ASP 1139 THR 1152 THR 1153 PRO 1154 PHE 1155 LYS 1156 HIS 1157 VAL 1158 ALA 1159 LEU 1160 CYS 1161 SER 1162 VAL 1163 GLY 1164 ARG 1165 ARG 1166 ARG 1167 GLY 1168 THR 1169 LEU 1170 ALA 1171 VAL 1172 TYR 1173 GLY 1174 ARG 1175 ASP 1176 PRO 1177 GLU 1178 TRP 1179 VAL 1180 THR 1181 GLN 1182 ARG 1183 PHE 1184 PRO 1185 ASP 1186 LEU 1187 THR 1188 ALA 1189 ALA 1190 ASP 1191 ARG 1192 ASP 1193 GLY 1194 LEU 1195 ARG 1196 ALA 1197 GLN 1198 TRP 1199 GLN 1200 SER 1210 GLY 1211 ASP 1212 PRO 1213 PHE 1214 ARG 1215 SER 1216 ASP 1217 SER 1218 TYR 1219 GLY 1220 LEU 1221 LEU 1222 GLY 1223 ASN 1224 SER 1225 VAL 1226 ASP 1227 ALA 1228 LEU 1229 TYR 1230 ILE 1231 ARG 1232 GLU 1233 ARG 1234 LEU 1235 PRO 1236 LYS 1237 LEU 1238 ARG 1239 TYR 1240 ASP 1241 LYS 1242 GLN 1243 LEU 1244 VAL 1245 GLY 1246 VAL 1247 THR 1248 GLU 1249 ARG 1250 GLU 1251 SER 1252 TYR 1253 VAL 1254 LYS 1255 ALA 1256
Unit 4	ASP 1304 GLU 1305 GLN 1306 GLN 1307 SER 1308 GLN 1309 ALA 1310 VAL 1311 ALA 1312 PRO 1313 VAL 1314 TYR 1315 VAL 1316 GLY 1317 GLY 1318 PHE 1319 LEU 1320 ALA 1321 ARG 1322 TYR 1323 ASP 1324 GLN 1325 SER 1326 PRO 1327 ASP 1328 GLU 1329 ALA 1330 GLU 1331 LEU 1332 LEU 1333 LEU 1334 PRO 1335 ARG 1336 ASP 1337 VAL 1338 VAL 1339 GLU 1340 HIS 1341 TRP 1342 LEU 1343 HIS 1344 ALA 1345 VAL 1355 ALA 1356 LEU 1357 PRO 1358 LEU 1359 ASN 1360 ILE 1361 ASN 1362 HIS 1363 ASP 1364 ASP 1365 THR 1366 ALA 1367 VAL 1368 VAL 1369 GLY 1370 HIS 1371 VAL 1372 ALA 1373 ALA 1374 MET 1375 GLN 1376 SER 1377 VAL 1378 ARG 1379 ASP 1380 GLY 1381 LEU 1382 PHE 1383 CYS 1384 LEU 1385 GLY 1386 CYS 1387 VAL 1388 THR 1389 SER 1390 PRO 1391 ARG 1392 PHE 1393 LEU 1394 GLU 1395 ILE 1396 VAL 1397 ARG 1398 ARG 1399 ALA 1400 SER 1401 GLU 1402 LYS 1403 SER 1404 GLU 1405 LEU 1406 VAL 1407 SER 1408 ARG 1409 GLY 1410 PRO 1411 VAL 1412 SER 1413 PRO 1414 LEU 1415 GLN 1416 PRO 1417 ASP 1418 LYS 1419 VAL 1420 VAL 1421 GLU 1422 PHE 1423 LEU 1424 SER 1425 GLY 1426 SER 1427 TYR 1428 ALA 1429 GLY 1430 LEU 1431 SER 1432 LEU 1433 SER 1434 SER 1435 ARG 1436 ARG 1437 CYS 1438 THR 1452 THR 1453 PRO 1454 PHE 1455 LYS 1456 HIS 1457 VAL 1458 ALA 1459 LEU 1460 CYS 1461 SER 1462 VAL 1463 GLY 1464 ARG 1465 ARG 1466 ARG 1467 GLY 1468 THR 1469 LEU 1470 ALA 1471 VAL 1472 TYR 1473 GLY 1474 ARG 1475 ASP 1476 PRO 1477 GLU 1478 TRP 1479 VAL 1480 THR 1481 GLN 1482 ARG 1483 PHE 1484 PRO 1485 ASP 1486 LEU 1487 THR 1488 ALA 1489 ALA 1490 ASP 1491 ARG 1492 ASP 1493 GLY 1494 LEU 1495 ARG 1496 ALA 1497 GLN 1498 TRP 1499 GLN 1500 ALA 1509 SER 1510 GLY 1511 ASP 1512 PRO 1513 PHE 1514 ARG 1515 SER 1516 ASP 1517 SER 1518 TYR 1519 GLY 1520 LEU 1521 LEU 1522 GLY 1523 ASN 1524 SER 1525 VAL 1526 ASP 1527 ALA 1528 LEU 1529 TYR 1530 ILE 1531 ARG 1532 GLU 1533 ARG 1534 LEU 1535 PRO 1536 LYS 1537 LEU 1538 ARG 1539 TYR 1540 ASP 1541 LYS 1542 GLN 1543 LEU 1544 VAL 1545 GLY 1546 VAL 1547 THR 1548 GLU 1549 ARG 1550 GLU 1551 SER 1552 TYR 1553 VAL 1554 LYS 1555 ALA 1556
Unit 5	ACE 260 VAL 261 DMK 262 DMH 263 ALA 264 CFT 265
Unit 6	ACE 560 VAL 561 DMK 562 DMH 563 ALA 564 CFT 565
Unit 7	ACE 1260 VAL 1261 DMK 1262 DMH 1263 ALA 1264 CFT 1265
Unit 8	ACE 1560 VAL 1561 DMK 1562 DMH 1563 ALA 1564 CFT 1565

Ligands

Unit 9	CL 257
Unit 10	CL 2
Unit 11	CL 1
Unit 12	CL 4