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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PROLYL-TRNA SYNTHETASE FROM METHANOCALDOCOCCUS JANASCHII
Keywords CLASS-II TRNA SYNTHETASE, LIGASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1NJ8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROLINE-TRNA SYNTHETASE  A 456 3772 0
2  Protein   PROLINE-TRNA SYNTHETASE  B 456 3772 0
3  Protein   PROLINE-TRNA SYNTHETASE  C 456 3772 0
4  Protein   PROLINE-TRNA SYNTHETASE  D 456 3772 0
5 Water     94 0 94
total       1918 15088 94
Proteins
Unit 1 MET0 LEU1 GLU2 PHE3 SER4 GLU5 TRP6 TYR7 SER8 ASP9 ILE10 LEU11 GLU12 LYS13 ALA14 GLU15 ILE16 TYR17 ASP18 VAL19 ARG20 TYR21 PRO22 ILE23 LYS24 GLY25 CYS26 GLY27 VAL28 TYR29 LEU30 PRO31 TYR32 GLY33 PHE34 LYS35 ILE36 ARG37 ARG38 TYR39 THR40 PHE41 GLU42 ILE43 ILE44 ARG45 ASN46 LEU47 LEU48 ASP49 GLU50 SER51 GLY52 HIS53 ASP54 GLU55 ALA56 LEU57 PHE58 PRO59 MET60 LEU61 ILE62 PRO63 GLU64 ASP65 LEU66 LEU67 ALA68 LYS69 GLU70 ALA71 GLU72 HIS73 ILE74 LYS75 GLY76 PHE77 GLU78 ASP79 GLU80 VAL81 TYR82 TRP83 VAL84 THR85 HIS86 GLY87 GLY88 LYS89 THR90 GLN91 LEU92 ASP93 VAL94 LYS95 LEU96 ALA97 LEU98 ARG99 PRO100 THR101 SER102 GLU103 THR104 PRO105 ILE106 TYR107 TYR108 MET109 MET110 LYS111 LEU112 TRP113 VAL114 LYS115 VAL116 HIS117 THR118 ASP119 LEU120 PRO121 ILE122 LYS123 ILE124 TYR125 GLN126 ILE127 VAL128 ASN129 THR130 PHE131 ARG132 TYR133 GLU134 THR135 LYS136 HIS137 THR138 ARG139 PRO140 LEU141 ILE142 ARG143 LEU144 ARG145 GLU146 ILE147 MET148 THR149 PHE150 LYS151 GLU152 ALA153 HIS154 THR155 ALA156 HIS157 SER158 THR159 LYS160 GLU161 GLU162 ALA163 GLU164 ASN165 GLN166 VAL167 LYS168 GLU169 ALA170 ILE171 SER172 ILE173 TYR174 LYS175 LYS176 PHE177 PHE178 ASP179 THR180 LEU181 GLY182 ILE183 PRO184 TYR185 LEU186 ILE187 SER188 LYS189 ARG190 PRO191 GLU192 TRP193 ASP194 LYS195 PHE196 PRO197 GLY198 ALA199 GLU200 TYR201 THR202 MET203 ALA204 PHE205 ASP206 THR207 ILE208 PHE209 PRO210 ASP211 GLY212 ARG213 THR214 MET215 GLN216 ILE217 ALA218 THR219 VAL220 HIS221 ASN222 LEU223 GLY224 GLN225 ASN226 PHE227 SER228 LYS229 THR230 PHE231 GLU232 ILE233 ILE234 PHE235 GLU236 THR237 PRO238 THR239 GLY240 ASP241 LYS242 ASP243 TYR244 ALA245 TYR246 GLN247 THR248 CYS249 TYR250 GLY251 ILE252 SER253 ASP254 ARG255 VAL256 ILE257 ALA258 SER259 ILE260 ILE261 ALA262 ILE263 HIS264 GLY265 ASP266 GLU267 LYS268 GLY269 LEU270 ILE271 LEU272 PRO273 PRO274 ILE275 VAL276 ALA277 PRO278 ILE279 GLN280 VAL281 VAL282 ILE283 VAL284 PRO285 LEU286 ILE287 PHE288 LYS289 GLY290 LYS291 GLU292 ASP293 ILE294 VAL295 MET296 GLU297 LYS298 ALA299 LYS300 GLU301 ILE302 TYR303 GLU304 LYS305 LEU306 LYS307 GLY308 LYS309 PHE310 ARG311 VAL312 HIS313 ILE314 ASP315 ASP316 ARG317 ASP318 ILE319 ARG320 PRO321 GLY322 ARG323 LYS324 PHE325 ASN326 ASP327 TRP328 GLU329 ILE330 LYS331 GLY332 VAL333 PRO334 LEU335 ARG336 ILE337 GLU338 VAL339 GLY340 PRO341 LYS342 ASP343 ILE344 GLU345 ASN346 LYS347 LYS348 ILE349 THR350 LEU351 PHE352 ARG353 ARG354 ASP355 THR356 MET357 GLU358 LYS359 PHE360 GLN361 VAL362 ASP363 GLU364 THR365 GLN366 LEU367 MET368 GLU369 VAL370 VAL371 GLU372 LYS373 THR374 LEU375 ASN376 ASN377 ILE378 MET379 GLU380 ASN381 ILE382 LYS383 ASN384 ARG385 ALA386 TRP387 GLU388 LYS389 PHE390 GLU391 ASN392 PHE393 ILE394 THR395 ILE396 LEU397 GLU398 ASP399 ILE400 ASN401 PRO402 ASP403 GLU404 ILE405 LYS406 ASN407 ILE408 LEU409 SER410 GLU411 LYS412 ARG413 GLY414 VAL415 ILE416 LEU417 VAL418 PRO419 PHE420 LYS421 GLU422 GLU423 ILE424 TYR425 ASN426 GLU427 GLU428 LEU429 GLU430 GLU431 LYS432 VAL433 GLU434 ALA435 THR436 ILE437 LEU438 GLY439 GLU440 THR441 GLU442 TYR443 LYS444 GLY445 ASN446 LYS447 TYR448 ILE449 ALA450 ILE451 ALA452 LYS453 THR454 TYR455
Unit 2 MET0 LEU1 GLU2 PHE3 SER4 GLU5 TRP6 TYR7 SER8 ASP9 ILE10 LEU11 GLU12 LYS13 ALA14 GLU15 ILE16 TYR17 ASP18 VAL19 ARG20 TYR21 PRO22 ILE23 LYS24 GLY25 CYS26 GLY27 VAL28 TYR29 LEU30 PRO31 TYR32 GLY33 PHE34 LYS35 ILE36 ARG37 ARG38 TYR39 THR40 PHE41 GLU42 ILE43 ILE44 ARG45 ASN46 LEU47 LEU48 ASP49 GLU50 SER51 GLY52 HIS53 ASP54 GLU55 ALA56 LEU57 PHE58 PRO59 MET60 LEU61 ILE62 PRO63 GLU64 ASP65 LEU66 LEU67 ALA68 LYS69 GLU70 ALA71 GLU72 HIS73 ILE74 LYS75 GLY76 PHE77 GLU78 ASP79 GLU80 VAL81 TYR82 TRP83 VAL84 THR85 HIS86 GLY87 GLY88 LYS89 THR90 GLN91 LEU92 ASP93 VAL94 LYS95 LEU96 ALA97 LEU98 ARG99 PRO100 THR101 SER102 GLU103 THR104 PRO105 ILE106 TYR107 TYR108 MET109 MET110 LYS111 LEU112 TRP113 VAL114 LYS115 VAL116 HIS117 THR118 ASP119 LEU120 PRO121 ILE122 LYS123 ILE124 TYR125 GLN126 ILE127 VAL128 ASN129 THR130 PHE131 ARG132 TYR133 GLU134 THR135 LYS136 HIS137 THR138 ARG139 PRO140 LEU141 ILE142 ARG143 LEU144 ARG145 GLU146 ILE147 MET148 THR149 PHE150 LYS151 GLU152 ALA153 HIS154 THR155 ALA156 HIS157 SER158 THR159 LYS160 GLU161 GLU162 ALA163 GLU164 ASN165 GLN166 VAL167 LYS168 GLU169 ALA170 ILE171 SER172 ILE173 TYR174 LYS175 LYS176 PHE177 PHE178 ASP179 THR180 LEU181 GLY182 ILE183 PRO184 TYR185 LEU186 ILE187 SER188 LYS189 ARG190 PRO191 GLU192 TRP193 ASP194 LYS195 PHE196 PRO197 GLY198 ALA199 GLU200 TYR201 THR202 MET203 ALA204 PHE205 ASP206 THR207 ILE208 PHE209 PRO210 ASP211 GLY212 ARG213 THR214 MET215 GLN216 ILE217 ALA218 THR219 VAL220 HIS221 ASN222 LEU223 GLY224 GLN225 ASN226 PHE227 SER228 LYS229 THR230 PHE231 GLU232 ILE233 ILE234 PHE235 GLU236 THR237 PRO238 THR239 GLY240 ASP241 LYS242 ASP243 TYR244 ALA245 TYR246 GLN247 THR248 CYS249 TYR250 GLY251 ILE252 SER253 ASP254 ARG255 VAL256 ILE257 ALA258 SER259 ILE260 ILE261 ALA262 ILE263 HIS264 GLY265 ASP266 GLU267 LYS268 GLY269 LEU270 ILE271 LEU272 PRO273 PRO274 ILE275 VAL276 ALA277 PRO278 ILE279 GLN280 VAL281 VAL282 ILE283 VAL284 PRO285 LEU286 ILE287 PHE288 LYS289 GLY290 LYS291 GLU292 ASP293 ILE294 VAL295 MET296 GLU297 LYS298 ALA299 LYS300 GLU301 ILE302 TYR303 GLU304 LYS305 LEU306 LYS307 GLY308 LYS309 PHE310 ARG311 VAL312 HIS313 ILE314 ASP315 ASP316 ARG317 ASP318 ILE319 ARG320 PRO321 GLY322 ARG323 LYS324 PHE325 ASN326 ASP327 TRP328 GLU329 ILE330 LYS331 GLY332 VAL333 PRO334 LEU335 ARG336 ILE337 GLU338 VAL339 GLY340 PRO341 LYS342 ASP343 ILE344 GLU345 ASN346 LYS347 LYS348 ILE349 THR350 LEU351 PHE352 ARG353 ARG354 ASP355 THR356 MET357 GLU358 LYS359 PHE360 GLN361 VAL362 ASP363 GLU364 THR365 GLN366 LEU367 MET368 GLU369 VAL370 VAL371 GLU372 LYS373 THR374 LEU375 ASN376 ASN377 ILE378 MET379 GLU380 ASN381 ILE382 LYS383 ASN384 ARG385 ALA386 TRP387 GLU388 LYS389 PHE390 GLU391 ASN392 PHE393 ILE394 THR395 ILE396 LEU397 GLU398 ASP399 ILE400 ASN401 PRO402 ASP403 GLU404 ILE405 LYS406 ASN407 ILE408 LEU409 SER410 GLU411 LYS412 ARG413 GLY414 VAL415 ILE416 LEU417 VAL418 PRO419 PHE420 LYS421 GLU422 GLU423 ILE424 TYR425 ASN426 GLU427 GLU428 LEU429 GLU430 GLU431 LYS432 VAL433 GLU434 ALA435 THR436 ILE437 LEU438 GLY439 GLU440 THR441 GLU442 TYR443 LYS444 GLY445 ASN446 LYS447 TYR448 ILE449 ALA450 ILE451 ALA452 LYS453 THR454 TYR455
Unit 3 MET0 LEU1 GLU2 PHE3 SER4 GLU5 TRP6 TYR7 SER8 ASP9 ILE10 LEU11 GLU12 LYS13 ALA14 GLU15 ILE16 TYR17 ASP18 VAL19 ARG20 TYR21 PRO22 ILE23 LYS24 GLY25 CYS26 GLY27 VAL28 TYR29 LEU30 PRO31 TYR32 GLY33 PHE34 LYS35 ILE36 ARG37 ARG38 TYR39 THR40 PHE41 GLU42 ILE43 ILE44 ARG45 ASN46 LEU47 LEU48 ASP49 GLU50 SER51 GLY52 HIS53 ASP54 GLU55 ALA56 LEU57 PHE58 PRO59 MET60 LEU61 ILE62 PRO63 GLU64 ASP65 LEU66 LEU67 ALA68 LYS69 GLU70 ALA71 GLU72 HIS73 ILE74 LYS75 GLY76 PHE77 GLU78 ASP79 GLU80 VAL81 TYR82 TRP83 VAL84 THR85 HIS86 GLY87 GLY88 LYS89 THR90 GLN91 LEU92 ASP93 VAL94 LYS95 LEU96 ALA97 LEU98 ARG99 PRO100 THR101 SER102 GLU103 THR104 PRO105 ILE106 TYR107 TYR108 MET109 MET110 LYS111 LEU112 TRP113 VAL114 LYS115 VAL116 HIS117 THR118 ASP119 LEU120 PRO121 ILE122 LYS123 ILE124 TYR125 GLN126 ILE127 VAL128 ASN129 THR130 PHE131 ARG132 TYR133 GLU134 THR135 LYS136 HIS137 THR138 ARG139 PRO140 LEU141 ILE142 ARG143 LEU144 ARG145 GLU146 ILE147 MET148 THR149 PHE150 LYS151 GLU152 ALA153 HIS154 THR155 ALA156 HIS157 SER158 THR159 LYS160 GLU161 GLU162 ALA163 GLU164 ASN165 GLN166 VAL167 LYS168 GLU169 ALA170 ILE171 SER172 ILE173 TYR174 LYS175 LYS176 PHE177 PHE178 ASP179 THR180 LEU181 GLY182 ILE183 PRO184 TYR185 LEU186 ILE187 SER188 LYS189 ARG190 PRO191 GLU192 TRP193 ASP194 LYS195 PHE196 PRO197 GLY198 ALA199 GLU200 TYR201 THR202 MET203 ALA204 PHE205 ASP206 THR207 ILE208 PHE209 PRO210 ASP211 GLY212 ARG213 THR214 MET215 GLN216 ILE217 ALA218 THR219 VAL220 HIS221 ASN222 LEU223 GLY224 GLN225 ASN226 PHE227 SER228 LYS229 THR230 PHE231 GLU232 ILE233 ILE234 PHE235 GLU236 THR237 PRO238 THR239 GLY240 ASP241 LYS242 ASP243 TYR244 ALA245 TYR246 GLN247 THR248 CYS249 TYR250 GLY251 ILE252 SER253 ASP254 ARG255 VAL256 ILE257 ALA258 SER259 ILE260 ILE261 ALA262 ILE263 HIS264 GLY265 ASP266 GLU267 LYS268 GLY269 LEU270 ILE271 LEU272 PRO273 PRO274 ILE275 VAL276 ALA277 PRO278 ILE279 GLN280 VAL281 VAL282 ILE283 VAL284 PRO285 LEU286 ILE287 PHE288 LYS289 GLY290 LYS291 GLU292 ASP293 ILE294 VAL295 MET296 GLU297 LYS298 ALA299 LYS300 GLU301 ILE302 TYR303 GLU304 LYS305 LEU306 LYS307 GLY308 LYS309 PHE310 ARG311 VAL312 HIS313 ILE314 ASP315 ASP316 ARG317 ASP318 ILE319 ARG320 PRO321 GLY322 ARG323 LYS324 PHE325 ASN326 ASP327 TRP328 GLU329 ILE330 LYS331 GLY332 VAL333 PRO334 LEU335 ARG336 ILE337 GLU338 VAL339 GLY340 PRO341 LYS342 ASP343 ILE344 GLU345 ASN346 LYS347 LYS348 ILE349 THR350 LEU351 PHE352 ARG353 ARG354 ASP355 THR356 MET357 GLU358 LYS359 PHE360 GLN361 VAL362 ASP363 GLU364 THR365 GLN366 LEU367 MET368 GLU369 VAL370 VAL371 GLU372 LYS373 THR374 LEU375 ASN376 ASN377 ILE378 MET379 GLU380 ASN381 ILE382 LYS383 ASN384 ARG385 ALA386 TRP387 GLU388 LYS389 PHE390 GLU391 ASN392 PHE393 ILE394 THR395 ILE396 LEU397 GLU398 ASP399 ILE400 ASN401 PRO402 ASP403 GLU404 ILE405 LYS406 ASN407 ILE408 LEU409 SER410 GLU411 LYS412 ARG413 GLY414 VAL415 ILE416 LEU417 VAL418 PRO419 PHE420 LYS421 GLU422 GLU423 ILE424 TYR425 ASN426 GLU427 GLU428 LEU429 GLU430 GLU431 LYS432 VAL433 GLU434 ALA435 THR436 ILE437 LEU438 GLY439 GLU440 THR441 GLU442 TYR443 LYS444 GLY445 ASN446 LYS447 TYR448 ILE449 ALA450 ILE451 ALA452 LYS453 THR454 TYR455
Unit 4 MET0 LEU1 GLU2 PHE3 SER4 GLU5 TRP6 TYR7 SER8 ASP9 ILE10 LEU11 GLU12 LYS13 ALA14 GLU15 ILE16 TYR17 ASP18 VAL19 ARG20 TYR21 PRO22 ILE23 LYS24 GLY25 CYS26 GLY27 VAL28 TYR29 LEU30 PRO31 TYR32 GLY33 PHE34 LYS35 ILE36 ARG37 ARG38 TYR39 THR40 PHE41 GLU42 ILE43 ILE44 ARG45 ASN46 LEU47 LEU48 ASP49 GLU50 SER51 GLY52 HIS53 ASP54 GLU55 ALA56 LEU57 PHE58 PRO59 MET60 LEU61 ILE62 PRO63 GLU64 ASP65 LEU66 LEU67 ALA68 LYS69 GLU70 ALA71 GLU72 HIS73 ILE74 LYS75 GLY76 PHE77 GLU78 ASP79 GLU80 VAL81 TYR82 TRP83 VAL84 THR85 HIS86 GLY87 GLY88 LYS89 THR90 GLN91 LEU92 ASP93 VAL94 LYS95 LEU96 ALA97 LEU98 ARG99 PRO100 THR101 SER102 GLU103 THR104 PRO105 ILE106 TYR107 TYR108 MET109 MET110 LYS111 LEU112 TRP113 VAL114 LYS115 VAL116 HIS117 THR118 ASP119 LEU120 PRO121 ILE122 LYS123 ILE124 TYR125 GLN126 ILE127 VAL128 ASN129 THR130 PHE131 ARG132 TYR133 GLU134 THR135 LYS136 HIS137 THR138 ARG139 PRO140 LEU141 ILE142 ARG143 LEU144 ARG145 GLU146 ILE147 MET148 THR149 PHE150 LYS151 GLU152 ALA153 HIS154 THR155 ALA156 HIS157 SER158 THR159 LYS160 GLU161 GLU162 ALA163 GLU164 ASN165 GLN166 VAL167 LYS168 GLU169 ALA170 ILE171 SER172 ILE173 TYR174 LYS175 LYS176 PHE177 PHE178 ASP179 THR180 LEU181 GLY182 ILE183 PRO184 TYR185 LEU186 ILE187 SER188 LYS189 ARG190 PRO191 GLU192 TRP193 ASP194 LYS195 PHE196 PRO197 GLY198 ALA199 GLU200 TYR201 THR202 MET203 ALA204 PHE205 ASP206 THR207 ILE208 PHE209 PRO210 ASP211 GLY212 ARG213 THR214 MET215 GLN216 ILE217 ALA218 THR219 VAL220 HIS221 ASN222 LEU223 GLY224 GLN225 ASN226 PHE227 SER228 LYS229 THR230 PHE231 GLU232 ILE233 ILE234 PHE235 GLU236 THR237 PRO238 THR239 GLY240 ASP241 LYS242 ASP243 TYR244 ALA245 TYR246 GLN247 THR248 CYS249 TYR250 GLY251 ILE252 SER253 ASP254 ARG255 VAL256 ILE257 ALA258 SER259 ILE260 ILE261 ALA262 ILE263 HIS264 GLY265 ASP266 GLU267 LYS268 GLY269 LEU270 ILE271 LEU272 PRO273 PRO274 ILE275 VAL276 ALA277 PRO278 ILE279 GLN280 VAL281 VAL282 ILE283 VAL284 PRO285 LEU286 ILE287 PHE288 LYS289 GLY290 LYS291 GLU292 ASP293 ILE294 VAL295 MET296 GLU297 LYS298 ALA299 LYS300 GLU301 ILE302 TYR303 GLU304 LYS305 LEU306 LYS307 GLY308 LYS309 PHE310 ARG311 VAL312 HIS313 ILE314 ASP315 ASP316 ARG317 ASP318 ILE319 ARG320 PRO321 GLY322 ARG323 LYS324 PHE325 ASN326 ASP327 TRP328 GLU329 ILE330 LYS331 GLY332 VAL333 PRO334 LEU335 ARG336 ILE337 GLU338 VAL339 GLY340 PRO341 LYS342 ASP343 ILE344 GLU345 ASN346 LYS347 LYS348 ILE349 THR350 LEU351 PHE352 ARG353 ARG354 ASP355 THR356 MET357 GLU358 LYS359 PHE360 GLN361 VAL362 ASP363 GLU364 THR365 GLN366 LEU367 MET368 GLU369 VAL370 VAL371 GLU372 LYS373 THR374 LEU375 ASN376 ASN377 ILE378 MET379 GLU380 ASN381 ILE382 LYS383 ASN384 ARG385 ALA386 TRP387 GLU388 LYS389 PHE390 GLU391 ASN392 PHE393 ILE394 THR395 ILE396 LEU397 GLU398 ASP399 ILE400 ASN401 PRO402 ASP403 GLU404 ILE405 LYS406 ASN407 ILE408 LEU409 SER410 GLU411 LYS412 ARG413 GLY414 VAL415 ILE416 LEU417 VAL418 PRO419 PHE420 LYS421 GLU422 GLU423 ILE424 TYR425 ASN426 GLU427 GLU428 LEU429 GLU430 GLU431 LYS432 VAL433 GLU434 ALA435 THR436 ILE437 LEU438 GLY439 GLU440 THR441 GLU442 TYR443 LYS444 GLY445 ASN446 LYS447 TYR448 ILE449 ALA450 ILE451 ALA452 LYS453 THR454 TYR455
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany