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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF D-HYDANTOINASE
Keywords TIM BARREL, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1NFG     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   D-HYDANTOINASE  A 457 3501 12
2  Protein   D-HYDANTOINASE  B 457 3501 12
3  Protein   D-HYDANTOINASE  C 457 3501 12
4  Protein   D-HYDANTOINASE  D 457 3501 12
5  Ligand   D-HYDANTOINASE  A 2 0 2
6  Ligand   D-HYDANTOINASE  B 2 0 2
7  Ligand   D-HYDANTOINASE  C 2 0 2
8  Ligand   D-HYDANTOINASE  D 2 0 2
9 Water     504 0 504
total       2340 14004 560

Proteins
Unit 1 MET1 ASP2 ILE3 ILE4 ILE5 LYS6 ASN7 GLY8 THR9 ILE10 VAL11 THR12 ALA13 ASP14 GLY15 ILE16 SER17 ARG18 ALA19 ASP20 LEU21 GLY22 ILE23 LYS24 ASP25 GLY26 LYS27 ILE28 THR29 GLN30 ILE31 GLY32 GLY33 ALA34 LEU35 GLY36 PRO37 ALA38 GLU39 ARG40 THR41 ILE42 ASP43 ALA44 ALA45 GLY46 ARG47 TYR48 VAL49 PHE50 PRO51 GLY52 GLY53 ILE54 ASP55 VAL56 HIS57 THR58 HIS59 VAL60 GLU61 THR62 VAL63 SER64 PHE65 ASN66 THR67 GLN68 SER69 ALA70 ASP71 THR72 PHE73 ALA74 THR75 ALA76 THR77 VAL78 ALA79 ALA80 ALA81 CYS82 GLY83 GLY84 THR85 THR86 THR87 ILE88 VAL89 ASP90 PHE91 CYS92 GLN93 GLN94 ASP95 ARG96 GLY97 HIS98 SER99 LEU100 ALA101 GLU102 ALA103 VAL104 ALA105 LYS106 TRP107 ASP108 GLY109 MET110 ALA111 GLY112 GLY113 LYS114 SER115 ALA116 ILE117 ASP118 TYR119 GLY120 TYR121 HIS122 ILE123 ILE124 VAL125 LEU126 ASP127 PRO128 THR129 ASP130 SER131 VAL132 ILE133 GLU134 GLU135 LEU136 GLU137 VAL138 LEU139 PRO140 ASP141 LEU142 GLY143 ILE144 THR145 SER146 PHE147 KCX148 VAL149 PHE150 MET151 ALA152 TYR153 ARG154 GLY155 MET156 ASN157 MET158 ILE159 ASP160 ASP161 VAL162 THR163 LEU164 LEU165 LYS166 THR167 LEU168 ASP169 LYS170 ALA171 VAL172 LYS173 THR174 GLY175 SER176 LEU177 VAL178 MET179 VAL180 HIS181 ALA182 GLU183 ASN184 GLY185 ASP186 ALA187 ALA188 ASP189 TYR190 LEU191 ARG192 ASP193 LYS194 PHE195 VAL196 ALA197 GLU198 GLY199 LYS200 THR201 ALA202 PRO203 ILE204 TYR205 HIS206 ALA207 LEU208 SER209 ARG210 PRO211 PRO212 ARG213 VAL214 GLU215 ALA216 GLU217 ALA218 THR219 ALA220 ARG221 ALA222 LEU223 ALA224 LEU225 ALA226 GLU227 ILE228 VAL229 ASN230 ALA231 PRO232 ILE233 TYR234 ILE235 VAL236 HIS237 VAL238 THR239 CYS240 GLU241 GLU242 SER243 LEU244 GLU245 GLU246 VAL247 MET248 ARG249 ALA250 LYS251 SER252 ARG253 GLY254 VAL255 ARG256 ALA257 LEU258 ALA259 GLU260 THR261 CYS262 THR263 HIS264 TYR265 LEU266 TYR267 LEU268 THR269 LYS270 GLU271 ASP272 LEU273 GLU274 ARG275 PRO276 ASP277 PHE278 GLU279 GLY280 ALA281 LYS282 TYR283 VAL284 PHE285 THR286 PRO287 PRO288 ALA289 ARG290 ALA291 LYS292 LYS293 ASP294 HIS295 ASP296 VAL297 LEU298 TRP299 ASN300 ALA301 LEU302 ARG303 ASN304 GLY305 VAL306 PHE307 GLU308 THR309 VAL310 SER311 SER312 ASP313 HIS314 CYS315 SER316 TRP317 LEU318 PHE319 LYS320 GLY321 HIS322 LYS323 ASP324 ARG325 GLY326 ARG327 ASN328 ASP329 PHE330 ARG331 ALA332 ILE333 PRO334 ASN335 GLY336 ALA337 PRO338 GLY339 VAL340 GLU341 GLU342 ARG343 LEU344 MET345 MET346 VAL347 TYR348 GLN349 GLY350 VAL351 ASN352 GLU353 GLY354 ARG355 ILE356 SER357 LEU358 THR359 GLN360 PHE361 VAL362 GLU363 LEU364 VAL365 ALA366 THR367 ARG368 PRO369 ALA370 LYS371 VAL372 PHE373 GLY374 MET375 PHE376 PRO377 GLN378 LYS379 GLY380 THR381 ILE382 ALA383 VAL384 GLY385 SER386 ASP387 ALA388 ASP389 ILE390 VAL391 LEU392 TRP393 ASP394 PRO395 GLU396 ALA397 GLU398 MET399 VAL400 ILE401 GLU402 GLN403 THR404 ALA405 MET406 HIS407 ASN408 ALA409 MET410 ASP411 TYR412 SER413 SER414 TYR415 GLU416 GLY417 HIS418 LYS419 VAL420 LYS421 GLY422 VAL423 PRO424 LYS425 THR426 VAL427 LEU428 LEU429 ARG430 GLY431 LYS432 VAL433 ILE434 VAL435 ASP436 GLU437 GLY438 SER439 TYR440 VAL441 GLY442 GLU443 PRO444 THR445 ASP446 GLY447 LYS448 PHE449 LEU450 LYS451 ARG452 ARG453 LYS454 TYR455 LYS456 GLN457
Unit 2 MET1 ASP2 ILE3 ILE4 ILE5 LYS6 ASN7 GLY8 THR9 ILE10 VAL11 THR12 ALA13 ASP14 GLY15 ILE16 SER17 ARG18 ALA19 ASP20 LEU21 GLY22 ILE23 LYS24 ASP25 GLY26 LYS27 ILE28 THR29 GLN30 ILE31 GLY32 GLY33 ALA34 LEU35 GLY36 PRO37 ALA38 GLU39 ARG40 THR41 ILE42 ASP43 ALA44 ALA45 GLY46 ARG47 TYR48 VAL49 PHE50 PRO51 GLY52 GLY53 ILE54 ASP55 VAL56 HIS57 THR58 HIS59 VAL60 GLU61 THR62 VAL63 SER64 PHE65 ASN66 THR67 GLN68 SER69 ALA70 ASP71 THR72 PHE73 ALA74 THR75 ALA76 THR77 VAL78 ALA79 ALA80 ALA81 CYS82 GLY83 GLY84 THR85 THR86 THR87 ILE88 VAL89 ASP90 PHE91 CYS92 GLN93 GLN94 ASP95 ARG96 GLY97 HIS98 SER99 LEU100 ALA101 GLU102 ALA103 VAL104 ALA105 LYS106 TRP107 ASP108 GLY109 MET110 ALA111 GLY112 GLY113 LYS114 SER115 ALA116 ILE117 ASP118 TYR119 GLY120 TYR121 HIS122 ILE123 ILE124 VAL125 LEU126 ASP127 PRO128 THR129 ASP130 SER131 VAL132 ILE133 GLU134 GLU135 LEU136 GLU137 VAL138 LEU139 PRO140 ASP141 LEU142 GLY143 ILE144 THR145 SER146 PHE147 KCX148 VAL149 PHE150 MET151 ALA152 TYR153 ARG154 GLY155 MET156 ASN157 MET158 ILE159 ASP160 ASP161 VAL162 THR163 LEU164 LEU165 LYS166 THR167 LEU168 ASP169 LYS170 ALA171 VAL172 LYS173 THR174 GLY175 SER176 LEU177 VAL178 MET179 VAL180 HIS181 ALA182 GLU183 ASN184 GLY185 ASP186 ALA187 ALA188 ASP189 TYR190 LEU191 ARG192 ASP193 LYS194 PHE195 VAL196 ALA197 GLU198 GLY199 LYS200 THR201 ALA202 PRO203 ILE204 TYR205 HIS206 ALA207 LEU208 SER209 ARG210 PRO211 PRO212 ARG213 VAL214 GLU215 ALA216 GLU217 ALA218 THR219 ALA220 ARG221 ALA222 LEU223 ALA224 LEU225 ALA226 GLU227 ILE228 VAL229 ASN230 ALA231 PRO232 ILE233 TYR234 ILE235 VAL236 HIS237 VAL238 THR239 CYS240 GLU241 GLU242 SER243 LEU244 GLU245 GLU246 VAL247 MET248 ARG249 ALA250 LYS251 SER252 ARG253 GLY254 VAL255 ARG256 ALA257 LEU258 ALA259 GLU260 THR261 CYS262 THR263 HIS264 TYR265 LEU266 TYR267 LEU268 THR269 LYS270 GLU271 ASP272 LEU273 GLU274 ARG275 PRO276 ASP277 PHE278 GLU279 GLY280 ALA281 LYS282 TYR283 VAL284 PHE285 THR286 PRO287 PRO288 ALA289 ARG290 ALA291 LYS292 LYS293 ASP294 HIS295 ASP296 VAL297 LEU298 TRP299 ASN300 ALA301 LEU302 ARG303 ASN304 GLY305 VAL306 PHE307 GLU308 THR309 VAL310 SER311 SER312 ASP313 HIS314 CYS315 SER316 TRP317 LEU318 PHE319 LYS320 GLY321 HIS322 LYS323 ASP324 ARG325 GLY326 ARG327 ASN328 ASP329 PHE330 ARG331 ALA332 ILE333 PRO334 ASN335 GLY336 ALA337 PRO338 GLY339 VAL340 GLU341 GLU342 ARG343 LEU344 MET345 MET346 VAL347 TYR348 GLN349 GLY350 VAL351 ASN352 GLU353 GLY354 ARG355 ILE356 SER357 LEU358 THR359 GLN360 PHE361 VAL362 GLU363 LEU364 VAL365 ALA366 THR367 ARG368 PRO369 ALA370 LYS371 VAL372 PHE373 GLY374 MET375 PHE376 PRO377 GLN378 LYS379 GLY380 THR381 ILE382 ALA383 VAL384 GLY385 SER386 ASP387 ALA388 ASP389 ILE390 VAL391 LEU392 TRP393 ASP394 PRO395 GLU396 ALA397 GLU398 MET399 VAL400 ILE401 GLU402 GLN403 THR404 ALA405 MET406 HIS407 ASN408 ALA409 MET410 ASP411 TYR412 SER413 SER414 TYR415 GLU416 GLY417 HIS418 LYS419 VAL420 LYS421 GLY422 VAL423 PRO424 LYS425 THR426 VAL427 LEU428 LEU429 ARG430 GLY431 LYS432 VAL433 ILE434 VAL435 ASP436 GLU437 GLY438 SER439 TYR440 VAL441 GLY442 GLU443 PRO444 THR445 ASP446 GLY447 LYS448 PHE449 LEU450 LYS451 ARG452 ARG453 LYS454 TYR455 LYS456 GLN457
Unit 3 MET1 ASP2 ILE3 ILE4 ILE5 LYS6 ASN7 GLY8 THR9 ILE10 VAL11 THR12 ALA13 ASP14 GLY15 ILE16 SER17 ARG18 ALA19 ASP20 LEU21 GLY22 ILE23 LYS24 ASP25 GLY26 LYS27 ILE28 THR29 GLN30 ILE31 GLY32 GLY33 ALA34 LEU35 GLY36 PRO37 ALA38 GLU39 ARG40 THR41 ILE42 ASP43 ALA44 ALA45 GLY46 ARG47 TYR48 VAL49 PHE50 PRO51 GLY52 GLY53 ILE54 ASP55 VAL56 HIS57 THR58 HIS59 VAL60 GLU61 THR62 VAL63 SER64 PHE65 ASN66 THR67 GLN68 SER69 ALA70 ASP71 THR72 PHE73 ALA74 THR75 ALA76 THR77 VAL78 ALA79 ALA80 ALA81 CYS82 GLY83 GLY84 THR85 THR86 THR87 ILE88 VAL89 ASP90 PHE91 CYS92 GLN93 GLN94 ASP95 ARG96 GLY97 HIS98 SER99 LEU100 ALA101 GLU102 ALA103 VAL104 ALA105 LYS106 TRP107 ASP108 GLY109 MET110 ALA111 GLY112 GLY113 LYS114 SER115 ALA116 ILE117 ASP118 TYR119 GLY120 TYR121 HIS122 ILE123 ILE124 VAL125 LEU126 ASP127 PRO128 THR129 ASP130 SER131 VAL132 ILE133 GLU134 GLU135 LEU136 GLU137 VAL138 LEU139 PRO140 ASP141 LEU142 GLY143 ILE144 THR145 SER146 PHE147 KCX148 VAL149 PHE150 MET151 ALA152 TYR153 ARG154 GLY155 MET156 ASN157 MET158 ILE159 ASP160 ASP161 VAL162 THR163 LEU164 LEU165 LYS166 THR167 LEU168 ASP169 LYS170 ALA171 VAL172 LYS173 THR174 GLY175 SER176 LEU177 VAL178 MET179 VAL180 HIS181 ALA182 GLU183 ASN184 GLY185 ASP186 ALA187 ALA188 ASP189 TYR190 LEU191 ARG192 ASP193 LYS194 PHE195 VAL196 ALA197 GLU198 GLY199 LYS200 THR201 ALA202 PRO203 ILE204 TYR205 HIS206 ALA207 LEU208 SER209 ARG210 PRO211 PRO212 ARG213 VAL214 GLU215 ALA216 GLU217 ALA218 THR219 ALA220 ARG221 ALA222 LEU223 ALA224 LEU225 ALA226 GLU227 ILE228 VAL229 ASN230 ALA231 PRO232 ILE233 TYR234 ILE235 VAL236 HIS237 VAL238 THR239 CYS240 GLU241 GLU242 SER243 LEU244 GLU245 GLU246 VAL247 MET248 ARG249 ALA250 LYS251 SER252 ARG253 GLY254 VAL255 ARG256 ALA257 LEU258 ALA259 GLU260 THR261 CYS262 THR263 HIS264 TYR265 LEU266 TYR267 LEU268 THR269 LYS270 GLU271 ASP272 LEU273 GLU274 ARG275 PRO276 ASP277 PHE278 GLU279 GLY280 ALA281 LYS282 TYR283 VAL284 PHE285 THR286 PRO287 PRO288 ALA289 ARG290 ALA291 LYS292 LYS293 ASP294 HIS295 ASP296 VAL297 LEU298 TRP299 ASN300 ALA301 LEU302 ARG303 ASN304 GLY305 VAL306 PHE307 GLU308 THR309 VAL310 SER311 SER312 ASP313 HIS314 CYS315 SER316 TRP317 LEU318 PHE319 LYS320 GLY321 HIS322 LYS323 ASP324 ARG325 GLY326 ARG327 ASN328 ASP329 PHE330 ARG331 ALA332 ILE333 PRO334 ASN335 GLY336 ALA337 PRO338 GLY339 VAL340 GLU341 GLU342 ARG343 LEU344 MET345 MET346 VAL347 TYR348 GLN349 GLY350 VAL351 ASN352 GLU353 GLY354 ARG355 ILE356 SER357 LEU358 THR359 GLN360 PHE361 VAL362 GLU363 LEU364 VAL365 ALA366 THR367 ARG368 PRO369 ALA370 LYS371 VAL372 PHE373 GLY374 MET375 PHE376 PRO377 GLN378 LYS379 GLY380 THR381 ILE382 ALA383 VAL384 GLY385 SER386 ASP387 ALA388 ASP389 ILE390 VAL391 LEU392 TRP393 ASP394 PRO395 GLU396 ALA397 GLU398 MET399 VAL400 ILE401 GLU402 GLN403 THR404 ALA405 MET406 HIS407 ASN408 ALA409 MET410 ASP411 TYR412 SER413 SER414 TYR415 GLU416 GLY417 HIS418 LYS419 VAL420 LYS421 GLY422 VAL423 PRO424 LYS425 THR426 VAL427 LEU428 LEU429 ARG430 GLY431 LYS432 VAL433 ILE434 VAL435 ASP436 GLU437 GLY438 SER439 TYR440 VAL441 GLY442 GLU443 PRO444 THR445 ASP446 GLY447 LYS448 PHE449 LEU450 LYS451 ARG452 ARG453 LYS454 TYR455 LYS456 GLN457
Unit 4 MET1 ASP2 ILE3 ILE4 ILE5 LYS6 ASN7 GLY8 THR9 ILE10 VAL11 THR12 ALA13 ASP14 GLY15 ILE16 SER17 ARG18 ALA19 ASP20 LEU21 GLY22 ILE23 LYS24 ASP25 GLY26 LYS27 ILE28 THR29 GLN30 ILE31 GLY32 GLY33 ALA34 LEU35 GLY36 PRO37 ALA38 GLU39 ARG40 THR41 ILE42 ASP43 ALA44 ALA45 GLY46 ARG47 TYR48 VAL49 PHE50 PRO51 GLY52 GLY53 ILE54 ASP55 VAL56 HIS57 THR58 HIS59 VAL60 GLU61 THR62 VAL63 SER64 PHE65 ASN66 THR67 GLN68 SER69 ALA70 ASP71 THR72 PHE73 ALA74 THR75 ALA76 THR77 VAL78 ALA79 ALA80 ALA81 CYS82 GLY83 GLY84 THR85 THR86 THR87 ILE88 VAL89 ASP90 PHE91 CYS92 GLN93 GLN94 ASP95 ARG96 GLY97 HIS98 SER99 LEU100 ALA101 GLU102 ALA103 VAL104 ALA105 LYS106 TRP107 ASP108 GLY109 MET110 ALA111 GLY112 GLY113 LYS114 SER115 ALA116 ILE117 ASP118 TYR119 GLY120 TYR121 HIS122 ILE123 ILE124 VAL125 LEU126 ASP127 PRO128 THR129 ASP130 SER131 VAL132 ILE133 GLU134 GLU135 LEU136 GLU137 VAL138 LEU139 PRO140 ASP141 LEU142 GLY143 ILE144 THR145 SER146 PHE147 KCX148 VAL149 PHE150 MET151 ALA152 TYR153 ARG154 GLY155 MET156 ASN157 MET158 ILE159 ASP160 ASP161 VAL162 THR163 LEU164 LEU165 LYS166 THR167 LEU168 ASP169 LYS170 ALA171 VAL172 LYS173 THR174 GLY175 SER176 LEU177 VAL178 MET179 VAL180 HIS181 ALA182 GLU183 ASN184 GLY185 ASP186 ALA187 ALA188 ASP189 TYR190 LEU191 ARG192 ASP193 LYS194 PHE195 VAL196 ALA197 GLU198 GLY199 LYS200 THR201 ALA202 PRO203 ILE204 TYR205 HIS206 ALA207 LEU208 SER209 ARG210 PRO211 PRO212 ARG213 VAL214 GLU215 ALA216 GLU217 ALA218 THR219 ALA220 ARG221 ALA222 LEU223 ALA224 LEU225 ALA226 GLU227 ILE228 VAL229 ASN230 ALA231 PRO232 ILE233 TYR234 ILE235 VAL236 HIS237 VAL238 THR239 CYS240 GLU241 GLU242 SER243 LEU244 GLU245 GLU246 VAL247 MET248 ARG249 ALA250 LYS251 SER252 ARG253 GLY254 VAL255 ARG256 ALA257 LEU258 ALA259 GLU260 THR261 CYS262 THR263 HIS264 TYR265 LEU266 TYR267 LEU268 THR269 LYS270 GLU271 ASP272 LEU273 GLU274 ARG275 PRO276 ASP277 PHE278 GLU279 GLY280 ALA281 LYS282 TYR283 VAL284 PHE285 THR286 PRO287 PRO288 ALA289 ARG290 ALA291 LYS292 LYS293 ASP294 HIS295 ASP296 VAL297 LEU298 TRP299 ASN300 ALA301 LEU302 ARG303 ASN304 GLY305 VAL306 PHE307 GLU308 THR309 VAL310 SER311 SER312 ASP313 HIS314 CYS315 SER316 TRP317 LEU318 PHE319 LYS320 GLY321 HIS322 LYS323 ASP324 ARG325 GLY326 ARG327 ASN328 ASP329 PHE330 ARG331 ALA332 ILE333 PRO334 ASN335 GLY336 ALA337 PRO338 GLY339 VAL340 GLU341 GLU342 ARG343 LEU344 MET345 MET346 VAL347 TYR348 GLN349 GLY350 VAL351 ASN352 GLU353 GLY354 ARG355 ILE356 SER357 LEU358 THR359 GLN360 PHE361 VAL362 GLU363 LEU364 VAL365 ALA366 THR367 ARG368 PRO369 ALA370 LYS371 VAL372 PHE373 GLY374 MET375 PHE376 PRO377 GLN378 LYS379 GLY380 THR381 ILE382 ALA383 VAL384 GLY385 SER386 ASP387 ALA388 ASP389 ILE390 VAL391 LEU392 TRP393 ASP394 PRO395 GLU396 ALA397 GLU398 MET399 VAL400 ILE401 GLU402 GLN403 THR404 ALA405 MET406 HIS407 ASN408 ALA409 MET410 ASP411 TYR412 SER413 SER414 TYR415 GLU416 GLY417 HIS418 LYS419 VAL420 LYS421 GLY422 VAL423 PRO424 LYS425 THR426 VAL427 LEU428 LEU429 ARG430 GLY431 LYS432 VAL433 ILE434 VAL435 ASP436 GLU437 GLY438 SER439 TYR440 VAL441 GLY442 GLU443 PRO444 THR445 ASP446 GLY447 LYS448 PHE449 LEU450 LYS451 ARG452 ARG453 LYS454 TYR455 LYS456 GLN457

Ligands
Unit 5 ZN501 ZN502
Unit 6 ZN601 ZN602
Unit 7 ZN701 ZN702
Unit 8 ZN801 ZN802

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany