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Sequence, Chains, Asymmetric and Biological Units

Title NAPTHALENE 1,2-DIOXYGENASE
Keywords NON-HEME IRON DIOXYGENASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1NDO     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NAPTHALENE 1,2-DIOXYGENASE  A 447 3480 0
2  Protein   NAPTHALENE 1,2-DIOXYGENASE  B 193 1608 0
3  Protein   NAPTHALENE 1,2-DIOXYGENASE  C 447 3480 0
4  Protein   NAPTHALENE 1,2-DIOXYGENASE  D 193 1608 0
5  Protein   NAPTHALENE 1,2-DIOXYGENASE  E 445 3466 0
6  Protein   NAPTHALENE 1,2-DIOXYGENASE  F 193 1608 0
7  Ligand   NAPTHALENE 1,2-DIOXYGENASE  A 2 0 5
8  Ligand   NAPTHALENE 1,2-DIOXYGENASE  C 2 0 5
9  Ligand   NAPTHALENE 1,2-DIOXYGENASE  E 2 0 5
10 Water     1061 0 1061
total       2985 15250 1076
Proteins
Unit 1 MET1 ASN2 TYR3 ASN4 ASN5 LYS6 ILE7 LEU8 VAL9 SER10 GLU11 SER12 GLY13 LEU14 SER15 GLN16 LYS17 HIS18 LEU19 ILE20 HIS21 GLY22 ASP23 GLU24 GLU25 LEU26 PHE27 GLN28 HIS29 GLU30 LEU31 LYS32 THR33 ILE34 PHE35 ALA36 ARG37 ASN38 TRP39 LEU40 PHE41 LEU42 THR43 HIS44 ASP45 SER46 LEU47 ILE48 PRO49 ALA50 PRO51 GLY52 ASP53 TYR54 VAL55 THR56 ALA57 LYS58 MET59 GLY60 ILE61 ASP62 GLU63 VAL64 ILE65 VAL66 SER67 ARG68 GLN69 ASN70 ASP71 GLY72 SER73 ILE74 ARG75 ALA76 PHE77 LEU78 ASN79 VAL80 CYS81 ARG82 HIS83 ARG84 GLY85 LYS86 THR87 LEU88 VAL89 SER90 VAL91 GLU92 ALA93 GLY94 ASN95 ALA96 LYS97 GLY98 PHE99 VAL100 CYS101 SER102 TYR103 HIS104 GLY105 TRP106 GLY107 PHE108 GLY109 SER110 ASN111 GLY112 GLU113 LEU114 GLN115 SER116 VAL117 PRO118 PHE119 GLU120 LYS121 ASP122 LEU123 TYR124 GLY125 GLU126 SER127 LEU128 ASN129 LYS130 LYS131 CYS132 LEU133 GLY134 LEU135 LYS136 GLU137 VAL138 ALA139 ARG140 VAL141 GLU142 SER143 PHE144 HIS145 GLY146 PHE147 ILE148 TYR149 GLY150 CYS151 PHE152 ASP153 GLN154 GLU155 ALA156 PRO157 PRO158 LEU159 MET160 ASP161 TYR162 LEU163 GLY164 ASP165 ALA166 ALA167 TRP168 TYR169 LEU170 GLU171 PRO172 MET173 PHE174 LYS175 HIS176 SER177 GLY178 GLY179 LEU180 GLU181 LEU182 VAL183 GLY184 PRO185 PRO186 GLY187 LYS188 VAL189 VAL190 ILE191 LYS192 ALA193 ASN194 TRP195 LYS196 ALA197 PRO198 ALA199 GLU200 ASN201 PHE202 VAL203 GLY204 ASP205 ALA206 TYR207 HIS208 VAL209 GLY210 TRP211 THR212 HIS213 ALA214 SER215 SER216 LEU217 ARG218 SER219 GLY220 GLU221 SER222 ILE223 PHE224 SER225 SER226 LEU227 ALA228 GLY229 ASN230 ALA231 ALA232 LEU233 PRO234 PRO235 GLU236 GLY237 ALA238 GLY239 LEU240 GLN241 MET242 THR243 SER244 LYS245 TYR246 GLY247 SER248 GLY249 MET250 GLY251 VAL252 LEU253 TRP254 ASP255 GLY256 TYR257 SER258 GLY259 VAL260 HIS261 SER262 ALA263 ASP264 LEU265 VAL266 PRO267 GLU268 LEU269 MET270 ALA271 PHE272 GLY273 GLY274 ALA275 LYS276 GLN277 GLU278 ARG279 LEU280 ASN281 LYS282 GLU283 ILE284 GLY285 ASP286 VAL287 ARG288 ALA289 ARG290 ILE291 TYR292 ARG293 SER294 HIS295 LEU296 ASN297 CYS298 THR299 VAL300 PHE301 PRO302 ASN303 ASN304 SER305 MET306 LEU307 THR308 CYS309 SER310 GLY311 VAL312 PHE313 LYS314 VAL315 TRP316 ASN317 PRO318 ILE319 ASP320 ALA321 ASN322 THR323 THR324 GLU325 VAL326 TRP327 THR328 TYR329 ALA330 ILE331 VAL332 GLU333 LYS334 ASP335 MET336 PRO337 GLU338 ASP339 LEU340 LYS341 ARG342 ARG343 LEU344 ALA345 ASP346 SER347 VAL348 GLN349 ARG350 THR351 PHE352 GLY353 PRO354 ALA355 GLY356 PHE357 TRP358 GLU359 SER360 ASP361 ASP362 ASN363 ASP364 ASN365 MET366 GLU367 THR368 ALA369 SER370 GLN371 ASN372 GLY373 LYS374 LYS375 TYR376 GLN377 SER378 ARG379 ASP380 SER381 ASP382 LEU383 LEU384 SER385 ASN386 LEU387 GLY388 PHE389 GLY390 GLU391 ASP392 VAL393 TYR394 GLY395 ASP396 ALA397 VAL398 TYR399 PRO400 GLY401 VAL402 VAL403 GLY404 LYS405 SER406 ALA407 ILE408 GLY409 GLU410 THR411 SER412 TYR413 ARG414 GLY415 PHE416 TYR417 ARG418 ALA419 TYR420 GLN421 ALA422 HIS423 VAL424 SER425 SER426 SER427 ASN428 TRP429 ALA430 GLU431 PHE432 GLU433 HIS434 ALA435 SER436 SER437 THR438 TRP439 HIS440 THR441 GLU442 LEU443 THR444 LYS445 THR446 THR447
Unit 2 MET502 ILE503 ASN504 ILE505 GLN506 GLU507 ASP508 LYS509 LEU510 VAL511 SER512 ALA513 HIS514 ASP515 ALA516 GLU517 GLU518 ILE519 LEU520 ARG521 PHE522 PHE523 ASN524 CYS525 HIS526 ASP527 SER528 ALA529 LEU530 GLN531 GLN532 GLU533 ALA534 THR535 THR536 LEU537 LEU538 THR539 GLN540 GLU541 ALA542 HIS543 LEU544 LEU545 ASP546 ILE547 GLN548 ALA549 TYR550 ARG551 ALA552 TRP553 LEU554 GLU555 HIS556 CYS557 VAL558 GLY559 SER560 GLU561 VAL562 GLN563 TYR564 GLN565 VAL566 ILE567 SER568 ARG569 GLU570 LEU571 ARG572 ALA573 ALA574 SER575 GLU576 ARG577 ARG578 TYR579 LYS580 LEU581 ASN582 GLU583 ALA584 MET585 ASN586 VAL587 TYR588 ASN589 GLU590 ASN591 PHE592 GLN593 GLN594 LEU595 LYS596 VAL597 ARG598 VAL599 GLU600 HIS601 GLN602 LEU603 ASP604 PRO605 GLN606 ASN607 TRP608 GLY609 ASN610 SER611 PRO612 LYS613 LEU614 ARG615 PHE616 THR617 ARG618 PHE619 ILE620 THR621 ASN622 VAL623 GLN624 ALA625 ALA626 MET627 ASP628 VAL629 ASN630 ASP631 LYS632 GLU633 LEU634 LEU635 HIS636 ILE637 ARG638 SER639 ASN640 VAL641 ILE642 LEU643 HIS644 ARG645 ALA646 ARG647 ARG648 GLY649 ASN650 GLN651 VAL652 ASP653 VAL654 PHE655 TYR656 ALA657 ALA658 ARG659 GLU660 ASP661 LYS662 TRP663 LYS664 ARG665 GLY666 GLU667 GLY668 GLY669 VAL670 ARG671 LYS672 LEU673 VAL674 GLN675 ARG676 PHE677 VAL678 ASP679 TYR680 PRO681 GLU682 ARG683 ILE684 LEU685 GLN686 THR687 HIS688 ASN689 LEU690 MET691 VAL692 PHE693 LEU694
Unit 3 MET1 ASN2 TYR3 ASN4 ASN5 LYS6 ILE7 LEU8 VAL9 SER10 GLU11 SER12 GLY13 LEU14 SER15 GLN16 LYS17 HIS18 LEU19 ILE20 HIS21 GLY22 ASP23 GLU24 GLU25 LEU26 PHE27 GLN28 HIS29 GLU30 LEU31 LYS32 THR33 ILE34 PHE35 ALA36 ARG37 ASN38 TRP39 LEU40 PHE41 LEU42 THR43 HIS44 ASP45 SER46 LEU47 ILE48 PRO49 ALA50 PRO51 GLY52 ASP53 TYR54 VAL55 THR56 ALA57 LYS58 MET59 GLY60 ILE61 ASP62 GLU63 VAL64 ILE65 VAL66 SER67 ARG68 GLN69 ASN70 ASP71 GLY72 SER73 ILE74 ARG75 ALA76 PHE77 LEU78 ASN79 VAL80 CYS81 ARG82 HIS83 ARG84 GLY85 LYS86 THR87 LEU88 VAL89 SER90 VAL91 GLU92 ALA93 GLY94 ASN95 ALA96 LYS97 GLY98 PHE99 VAL100 CYS101 SER102 TYR103 HIS104 GLY105 TRP106 GLY107 PHE108 GLY109 SER110 ASN111 GLY112 GLU113 LEU114 GLN115 SER116 VAL117 PRO118 PHE119 GLU120 LYS121 ASP122 LEU123 TYR124 GLY125 GLU126 SER127 LEU128 ASN129 LYS130 LYS131 CYS132 LEU133 GLY134 LEU135 LYS136 GLU137 VAL138 ALA139 ARG140 VAL141 GLU142 SER143 PHE144 HIS145 GLY146 PHE147 ILE148 TYR149 GLY150 CYS151 PHE152 ASP153 GLN154 GLU155 ALA156 PRO157 PRO158 LEU159 MET160 ASP161 TYR162 LEU163 GLY164 ASP165 ALA166 ALA167 TRP168 TYR169 LEU170 GLU171 PRO172 MET173 PHE174 LYS175 HIS176 SER177 GLY178 GLY179 LEU180 GLU181 LEU182 VAL183 GLY184 PRO185 PRO186 GLY187 LYS188 VAL189 VAL190 ILE191 LYS192 ALA193 ASN194 TRP195 LYS196 ALA197 PRO198 ALA199 GLU200 ASN201 PHE202 VAL203 GLY204 ASP205 ALA206 TYR207 HIS208 VAL209 GLY210 TRP211 THR212 HIS213 ALA214 SER215 SER216 LEU217 ARG218 SER219 GLY220 GLU221 SER222 ILE223 PHE224 SER225 SER226 LEU227 ALA228 GLY229 ASN230 ALA231 ALA232 LEU233 PRO234 PRO235 GLU236 GLY237 ALA238 GLY239 LEU240 GLN241 MET242 THR243 SER244 LYS245 TYR246 GLY247 SER248 GLY249 MET250 GLY251 VAL252 LEU253 TRP254 ASP255 GLY256 TYR257 SER258 GLY259 VAL260 HIS261 SER262 ALA263 ASP264 LEU265 VAL266 PRO267 GLU268 LEU269 MET270 ALA271 PHE272 GLY273 GLY274 ALA275 LYS276 GLN277 GLU278 ARG279 LEU280 ASN281 LYS282 GLU283 ILE284 GLY285 ASP286 VAL287 ARG288 ALA289 ARG290 ILE291 TYR292 ARG293 SER294 HIS295 LEU296 ASN297 CYS298 THR299 VAL300 PHE301 PRO302 ASN303 ASN304 SER305 MET306 LEU307 THR308 CYS309 SER310 GLY311 VAL312 PHE313 LYS314 VAL315 TRP316 ASN317 PRO318 ILE319 ASP320 ALA321 ASN322 THR323 THR324 GLU325 VAL326 TRP327 THR328 TYR329 ALA330 ILE331 VAL332 GLU333 LYS334 ASP335 MET336 PRO337 GLU338 ASP339 LEU340 LYS341 ARG342 ARG343 LEU344 ALA345 ASP346 SER347 VAL348 GLN349 ARG350 THR351 PHE352 GLY353 PRO354 ALA355 GLY356 PHE357 TRP358 GLU359 SER360 ASP361 ASP362 ASN363 ASP364 ASN365 MET366 GLU367 THR368 ALA369 SER370 GLN371 ASN372 GLY373 LYS374 LYS375 TYR376 GLN377 SER378 ARG379 ASP380 SER381 ASP382 LEU383 LEU384 SER385 ASN386 LEU387 GLY388 PHE389 GLY390 GLU391 ASP392 VAL393 TYR394 GLY395 ASP396 ALA397 VAL398 TYR399 PRO400 GLY401 VAL402 VAL403 GLY404 LYS405 SER406 ALA407 ILE408 GLY409 GLU410 THR411 SER412 TYR413 ARG414 GLY415 PHE416 TYR417 ARG418 ALA419 TYR420 GLN421 ALA422 HIS423 VAL424 SER425 SER426 SER427 ASN428 TRP429 ALA430 GLU431 PHE432 GLU433 HIS434 ALA435 SER436 SER437 THR438 TRP439 HIS440 THR441 GLU442 LEU443 THR444 LYS445 THR446 THR447
Unit 4 MET502 ILE503 ASN504 ILE505 GLN506 GLU507 ASP508 LYS509 LEU510 VAL511 SER512 ALA513 HIS514 ASP515 ALA516 GLU517 GLU518 ILE519 LEU520 ARG521 PHE522 PHE523 ASN524 CYS525 HIS526 ASP527 SER528 ALA529 LEU530 GLN531 GLN532 GLU533 ALA534 THR535 THR536 LEU537 LEU538 THR539 GLN540 GLU541 ALA542 HIS543 LEU544 LEU545 ASP546 ILE547 GLN548 ALA549 TYR550 ARG551 ALA552 TRP553 LEU554 GLU555 HIS556 CYS557 VAL558 GLY559 SER560 GLU561 VAL562 GLN563 TYR564 GLN565 VAL566 ILE567 SER568 ARG569 GLU570 LEU571 ARG572 ALA573 ALA574 SER575 GLU576 ARG577 ARG578 TYR579 LYS580 LEU581 ASN582 GLU583 ALA584 MET585 ASN586 VAL587 TYR588 ASN589 GLU590 ASN591 PHE592 GLN593 GLN594 LEU595 LYS596 VAL597 ARG598 VAL599 GLU600 HIS601 GLN602 LEU603 ASP604 PRO605 GLN606 ASN607 TRP608 GLY609 ASN610 SER611 PRO612 LYS613 LEU614 ARG615 PHE616 THR617 ARG618 PHE619 ILE620 THR621 ASN622 VAL623 GLN624 ALA625 ALA626 MET627 ASP628 VAL629 ASN630 ASP631 LYS632 GLU633 LEU634 LEU635 HIS636 ILE637 ARG638 SER639 ASN640 VAL641 ILE642 LEU643 HIS644 ARG645 ALA646 ARG647 ARG648 GLY649 ASN650 GLN651 VAL652 ASP653 VAL654 PHE655 TYR656 ALA657 ALA658 ARG659 GLU660 ASP661 LYS662 TRP663 LYS664 ARG665 GLY666 GLU667 GLY668 GLY669 VAL670 ARG671 LYS672 LEU673 VAL674 GLN675 ARG676 PHE677 VAL678 ASP679 TYR680 PRO681 GLU682 ARG683 ILE684 LEU685 GLN686 THR687 HIS688 ASN689 LEU690 MET691 VAL692 PHE693 LEU694
Unit 5 MET1 ASN2 TYR3 ASN4 ASN5 LYS6 ILE7 LEU8 VAL9 SER10 GLU11 SER12 GLY13 LEU14 SER15 GLN16 LYS17 HIS18 LEU19 ILE20 HIS21 GLY22 ASP23 GLU24 GLU25 LEU26 PHE27 GLN28 HIS29 GLU30 LEU31 LYS32 THR33 ILE34 PHE35 ALA36 ARG37 ASN38 TRP39 LEU40 PHE41 LEU42 THR43 HIS44 ASP45 SER46 LEU47 ILE48 PRO49 ALA50 PRO51 GLY52 ASP53 TYR54 VAL55 THR56 ALA57 LYS58 MET59 GLY60 ILE61 ASP62 GLU63 VAL64 ILE65 VAL66 SER67 ARG68 GLN69 ASN70 ASP71 GLY72 SER73 ILE74 ARG75 ALA76 PHE77 LEU78 ASN79 VAL80 CYS81 ARG82 HIS83 ARG84 GLY85 LYS86 THR87 LEU88 VAL89 SER90 VAL91 GLU92 ALA93 GLY94 ASN95 ALA96 LYS97 GLY98 PHE99 VAL100 CYS101 SER102 TYR103 HIS104 GLY105 TRP106 GLY107 PHE108 GLY109 SER110 ASN111 GLY112 GLU113 LEU114 GLN115 SER116 VAL117 PRO118 PHE119 GLU120 LYS121 ASP122 LEU123 TYR124 GLY125 GLU126 SER127 LEU128 ASN129 LYS130 LYS131 CYS132 LEU133 GLY134 LEU135 LYS136 GLU137 VAL138 ALA139 ARG140 VAL141 GLU142 SER143 PHE144 HIS145 GLY146 PHE147 ILE148 TYR149 GLY150 CYS151 PHE152 ASP153 GLN154 GLU155 ALA156 PRO157 PRO158 LEU159 MET160 ASP161 TYR162 LEU163 GLY164 ASP165 ALA166 ALA167 TRP168 TYR169 LEU170 GLU171 PRO172 MET173 PHE174 LYS175 HIS176 SER177 GLY178 GLY179 LEU180 GLU181 LEU182 VAL183 GLY184 PRO185 PRO186 GLY187 LYS188 VAL189 VAL190 ILE191 LYS192 ALA193 ASN194 TRP195 LYS196 ALA197 PRO198 ALA199 GLU200 ASN201 PHE202 VAL203 GLY204 ASP205 ALA206 TYR207 HIS208 VAL209 GLY210 TRP211 THR212 HIS213 ALA214 SER215 SER216 LEU217 ARG218 SER219 GLY220 GLU221 SER222 ILE223 PHE224 SER225 SER226 LEU227 ALA228 GLY229 ASN230 ALA231 ALA232 LEU233 PRO234 PRO235 GLU236 GLY237 ALA238 GLY239 LEU240 GLN241 MET242 THR243 SER244 LYS245 TYR246 GLY247 SER248 GLY249 MET250 GLY251 VAL252 LEU253 TRP254 ASP255 GLY256 TYR257 SER258 GLY259 VAL260 HIS261 SER262 ALA263 ASP264 LEU265 VAL266 PRO267 GLU268 LEU269 MET270 ALA271 PHE272 GLY273 GLY274 ALA275 LYS276 GLN277 GLU278 ARG279 LEU280 ASN281 LYS282 GLU283 ILE284 GLY285 ASP286 VAL287 ARG288 ALA289 ARG290 ILE291 TYR292 ARG293 SER294 HIS295 LEU296 ASN297 CYS298 THR299 VAL300 PHE301 PRO302 ASN303 ASN304 SER305 MET306 LEU307 THR308 CYS309 SER310 GLY311 VAL312 PHE313 LYS314 VAL315 TRP316 ASN317 PRO318 ILE319 ASP320 ALA321 ASN322 THR323 THR324 GLU325 VAL326 TRP327 THR328 TYR329 ALA330 ILE331 VAL332 GLU333 LYS334 ASP335 MET336 PRO337 GLU338 ASP339 LEU340 LYS341 ARG342 ARG343 LEU344 ALA345 ASP346 SER347 VAL348 GLN349 ARG350 THR351 PHE352 GLY353 PRO354 ALA355 GLY356 PHE357 TRP358 GLU359 SER360 ASP361 ASP362 ASN363 ASP364 ASN365 MET366 GLU367 THR368 ALA369 SER370 GLN371 ASN372 GLY373 LYS374 LYS375 TYR376 GLN377 SER378 ARG379 ASP380 SER381 ASP382 LEU383 LEU384 SER385 ASN386 LEU387 GLY388 PHE389 GLY390 GLU391 ASP392 VAL393 TYR394 GLY395 ASP396 ALA397 VAL398 TYR399 PRO400 GLY401 VAL402 VAL403 GLY404 LYS405 SER406 ALA407 ILE408 GLY409 GLU410 THR411 SER412 TYR413 ARG414 GLY415 PHE416 TYR417 ARG418 ALA419 TYR420 GLN421 ALA422 HIS423 VAL424 SER425 SER426 SER427 ASN428 TRP429 ALA430 GLU431 PHE432 GLU433 HIS434 ALA435 SER436 SER437 THR438 TRP439 HIS440 THR441 GLU442 LEU443 THR444 LYS445
Unit 6 MET502 ILE503 ASN504 ILE505 GLN506 GLU507 ASP508 LYS509 LEU510 VAL511 SER512 ALA513 HIS514 ASP515 ALA516 GLU517 GLU518 ILE519 LEU520 ARG521 PHE522 PHE523 ASN524 CYS525 HIS526 ASP527 SER528 ALA529 LEU530 GLN531 GLN532 GLU533 ALA534 THR535 THR536 LEU537 LEU538 THR539 GLN540 GLU541 ALA542 HIS543 LEU544 LEU545 ASP546 ILE547 GLN548 ALA549 TYR550 ARG551 ALA552 TRP553 LEU554 GLU555 HIS556 CYS557 VAL558 GLY559 SER560 GLU561 VAL562 GLN563 TYR564 GLN565 VAL566 ILE567 SER568 ARG569 GLU570 LEU571 ARG572 ALA573 ALA574 SER575 GLU576 ARG577 ARG578 TYR579 LYS580 LEU581 ASN582 GLU583 ALA584 MET585 ASN586 VAL587 TYR588 ASN589 GLU590 ASN591 PHE592 GLN593 GLN594 LEU595 LYS596 VAL597 ARG598 VAL599 GLU600 HIS601 GLN602 LEU603 ASP604 PRO605 GLN606 ASN607 TRP608 GLY609 ASN610 SER611 PRO612 LYS613 LEU614 ARG615 PHE616 THR617 ARG618 PHE619 ILE620 THR621 ASN622 VAL623 GLN624 ALA625 ALA626 MET627 ASP628 VAL629 ASN630 ASP631 LYS632 GLU633 LEU634 LEU635 HIS636 ILE637 ARG638 SER639 ASN640 VAL641 ILE642 LEU643 HIS644 ARG645 ALA646 ARG647 ARG648 GLY649 ASN650 GLN651 VAL652 ASP653 VAL654 PHE655 TYR656 ALA657 ALA658 ARG659 GLU660 ASP661 LYS662 TRP663 LYS664 ARG665 GLY666 GLU667 GLY668 GLY669 VAL670 ARG671 LYS672 LEU673 VAL674 GLN675 ARG676 PHE677 VAL678 ASP679 TYR680 PRO681 GLU682 ARG683 ILE684 LEU685 GLN686 THR687 HIS688 ASN689 LEU690 MET691 VAL692 PHE693 LEU694
Ligands
Unit 7 FES451 FE452
Unit 8 FES451 FE452
Unit 9 FES451 FE452
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany