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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURES OF HUMAN PROSTATIC ACID PHOSPHATASE IN CO A PHOSPHATE ION AND ALPHA-BENZYLAMINOBENZYLPHOSPHONIC ACID MECHANISTIC PICTURE AND OFFER NEW INSIGHTS INTO INHIBITOR D
Keywords ACID PHOSPHATASE, PAP, PROSTATE, PHOSPHATE, INHIBITOR, HYDRO
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1ND5     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROSTATIC ACID PHOSPHATASE  A 342 2800 0
2  Protein   PROSTATIC ACID PHOSPHATASE  B 342 2796 0
3  Protein   PROSTATIC ACID PHOSPHATASE  C 342 2800 0
4  Protein   PROSTATIC ACID PHOSPHATASE  D 342 2800 0
5  Ligand    E 2 0 30
6  Ligand    F 2 0 30
7  Ligand    G 2 0 30
8  Ligand    H 2 0 30
9  Ligand    I 3 0 42
10  Ligand   PROSTATIC ACID PHOSPHATASE  A 4 0 67
11  Ligand   PROSTATIC ACID PHOSPHATASE  B 4 0 66
12  Ligand   PROSTATIC ACID PHOSPHATASE  C 3 0 51
13  Ligand   PROSTATIC ACID PHOSPHATASE  D 3 0 50
14 Water     135 0 135
total       1528 11196 531
Proteins
Unit 1 LYS1 GLU2 LEU3 LYS4 PHE5 VAL6 THR7 LEU8 VAL9 PHE10 ARG11 HIS12 GLY13 ASP14 ARG15 SER16 PRO17 ILE18 ASP19 THR20 PHE21 PRO22 THR23 ASP24 PRO25 ILE26 LYS27 GLU28 SER29 SER30 TRP31 PRO32 GLN33 GLY34 PHE35 GLY36 GLN37 LEU38 THR39 GLN40 LEU41 GLY42 MET43 GLU44 GLN45 HIS46 TYR47 GLU48 LEU49 GLY50 GLU51 TYR52 ILE53 ARG54 LYS55 ARG56 TYR57 ARG58 LYS59 PHE60 LEU61 ASN62 GLU63 SER64 TYR65 LYS66 HIS67 GLU68 GLN69 VAL70 TYR71 ILE72 ARG73 SER74 THR75 ASP76 VAL77 ASP78 ARG79 THR80 LEU81 MET82 SER83 ALA84 MET85 THR86 ASN87 LEU88 ALA89 ALA90 LEU91 PHE92 PRO93 PRO94 GLU95 GLY96 VAL97 SER98 ILE99 TRP100 ASN101 PRO102 ILE103 LEU104 LEU105 TRP106 GLN107 PRO108 ILE109 PRO110 VAL111 HIS112 THR113 VAL114 PRO115 LEU116 SER117 GLU118 ASP119 GLN120 LEU121 LEU122 TYR123 LEU124 PRO125 PHE126 ARG127 ASN128 CYS129 PRO130 ARG131 PHE132 GLN133 GLU134 LEU135 GLU136 SER137 GLU138 THR139 LEU140 LYS141 SER142 GLU143 GLU144 PHE145 GLN146 LYS147 ARG148 LEU149 HIS150 PRO151 TYR152 LYS153 ASP154 PHE155 ILE156 ALA157 THR158 LEU159 GLY160 LYS161 LEU162 SER163 GLY164 LEU165 HIS166 GLY167 GLN168 ASP169 LEU170 PHE171 GLY172 ILE173 TRP174 SER175 LYS176 VAL177 TYR178 ASP179 PRO180 LEU181 TYR182 CYS183 GLU184 SER185 VAL186 HIS187 ASN188 PHE189 THR190 LEU191 PRO192 SER193 TRP194 ALA195 THR196 GLU197 ASP198 THR199 MET200 THR201 LYS202 LEU203 ARG204 GLU205 LEU206 SER207 GLU208 LEU209 SER210 LEU211 LEU212 SER213 LEU214 TYR215 GLY216 ILE217 HIS218 LYS219 GLN220 LYS221 GLU222 LYS223 SER224 ARG225 LEU226 GLN227 GLY228 GLY229 VAL230 LEU231 VAL232 ASN233 GLU234 ILE235 LEU236 ASN237 HIS238 MET239 LYS240 ARG241 ALA242 THR243 GLN244 ILE245 PRO246 SER247 TYR248 LYS249 LYS250 LEU251 ILE252 MET253 TYR254 SER255 ALA256 HIS257 ASP258 THR259 THR260 VAL261 SER262 GLY263 LEU264 GLN265 MET266 ALA267 LEU268 ASP269 VAL270 TYR271 ASN272 GLY273 LEU274 LEU275 PRO276 PRO277 TYR278 ALA279 SER280 CYS281 HIS282 LEU283 THR284 GLU285 LEU286 TYR287 PHE288 GLU289 LYS290 GLY291 GLU292 TYR293 PHE294 VAL295 GLU296 MET297 TYR298 TYR299 ARG300 ASN301 GLU302 THR303 GLN304 HIS305 GLU306 PRO307 TYR308 PRO309 LEU310 MET311 LEU312 PRO313 GLY314 CYS315 SER316 PRO317 SER318 CYS319 PRO320 LEU321 GLU322 ARG323 PHE324 ALA325 GLU326 LEU327 VAL328 GLY329 PRO330 VAL331 ILE332 PRO333 GLN334 ASP335 TRP336 SER337 THR338 GLU339 CYS340 MET341 THR342
Unit 2 LYS1000 GLU1001 LEU1002 LYS1003 PHE1004 VAL1005 THR1006 LEU1007 VAL1008 PHE1009 ARG1010 HIS1011 GLY1012 ASP1013 ARG1014 SER1015 PRO1016 ILE1017 ASP1018 THR1019 PHE1020 PRO1021 THR1022 ASP1023 PRO1024 ILE1025 LYS1026 GLU1027 SER1028 SER1029 TRP1030 PRO1031 GLN1032 GLY1033 PHE1034 GLY1035 GLN1036 LEU1037 THR1038 GLN1039 LEU1040 GLY1041 MET1042 GLU1043 GLN1044 HIS1045 TYR1046 GLU1047 LEU1048 GLY1049 GLU1050 TYR1051 ILE1052 ARG1053 LYS1054 ARG1055 TYR1056 ARG1057 LYS1058 PHE1059 LEU1060 ASN1061 GLU1062 SER1063 TYR1064 LYS1065 HIS1066 GLU1067 GLN1068 VAL1069 TYR1070 ILE1071 ARG1072 SER1073 THR1074 ASP1075 VAL1076 ASP1077 ARG1078 THR1079 LEU1080 MET1081 SER1082 ALA1083 MET1084 THR1085 ASN1086 LEU1087 ALA1088 ALA1089 LEU1090 PHE1091 PRO1092 PRO1093 GLU1094 GLY1095 VAL1096 SER1097 ILE1098 TRP1099 ASN1100 PRO1101 ILE1102 LEU1103 LEU1104 TRP1105 GLN1106 PRO1107 ILE1108 PRO1109 VAL1110 HIS1111 THR1112 VAL1113 PRO1114 LEU1115 SER1116 GLU1117 ASP1118 GLN1119 LEU1120 LEU1121 TYR1122 LEU1123 PRO1124 PHE1125 ARG1126 ASN1127 CYS1128 PRO1129 ARG1130 GLN1131 GLU1132 LEU1133 GLU1134 SER1135 GLU1136 THR1137 LEU1138 LYS1139 SER1140 GLU1141 GLU1142 PHE1143 GLN1144 LYS1145 ARG1146 LEU1147 HIS1148 PRO1149 TYR1150 LYS1151 ASP1152 PHE1153 ILE1154 ALA1155 THR1156 LEU1157 GLY1158 LYS1159 LEU1160 SER1161 GLY1162 LEU1163 HIS1164 GLY1165 GLN1166 ASP1167 LEU1168 PHE1169 GLY1170 ILE1171 TRP1172 SER1173 LYS1174 VAL1175 TYR1176 ASP1177 PRO1178 LEU1179 TYR1180 CYS1181 GLU1182 SER1183 VAL1184 HIS1185 ASN1186 PHE1187 THR1188 LEU1189 PRO1190 SER1191 TRP1192 ALA1193 THR1194 GLU1195 ASP1196 THR1197 MET1198 THR1199 LYS1200 LEU1201 ARG1202 GLU1203 LEU1204 SER1205 GLU1206 LEU1207 SER1208 LEU1209 LEU1210 SER1211 LEU1212 TYR1213 GLY1214 ILE1215 HIS1216 LYS1217 GLN1218 LYS1219 GLU1220 LYS1221 SER1222 ARG1223 LEU1224 GLN1225 GLY1226 GLY1227 VAL1228 LEU1229 VAL1230 ASN1231 GLU1232 ILE1233 LEU1234 ASN1235 HIS1236 MET1237 LYS1238 ARG1239 ALA1240 THR1241 GLN1242 ILE1243 PRO1244 SER1245 TYR1246 LYS1247 LYS1248 LEU1249 ILE1250 MET1251 TYR1252 SER1253 ALA1254 HIS1255 ASP1256 THR1257 THR1258 VAL1259 SER1260 GLY1261 LEU1262 GLN1263 MET1264 ALA1265 LEU1266 ASP1267 VAL1268 TYR1269 ASN1270 GLY1271 LEU1272 LEU1273 PRO1274 PRO1275 TYR1276 ALA1277 SER1278 CYS1279 HIS1280 LEU1281 THR1282 GLU1283 LEU1284 TYR1285 PHE1286 GLU1287 LYS1288 GLY1289 GLU1290 TYR1291 PHE1292 VAL1293 GLU1294 MET1295 TYR1296 TYR1297 ARG1298 ASN1299 GLU1300 THR1301 GLN1302 HIS1303 GLU1304 PRO1305 TYR1306 PRO1307 LEU1308 MET1309 LEU1310 PRO1311 GLY1312 CYS1313 SER1314 PRO1315 SER1316 CYS1317 PRO1318 LEU1319 GLU1320 ARG1321 PHE1322 ALA1323 GLU1324 LEU1325 VAL1326 GLY1327 PRO1328 VAL1329 ILE1330 PRO1331 GLN1332 ASP1333 TRP1334 SER1335 THR1336 GLU1337 CYS1338 MET1339 THR1340 THR1341
Unit 3 LYS2000 GLU2001 LEU2002 LYS2003 PHE2004 VAL2005 THR2006 LEU2007 VAL2008 PHE2009 ARG2010 HIS2011 GLY2012 ASP2013 ARG2014 SER2015 PRO2016 ILE2017 ASP2018 THR2019 PHE2020 PRO2021 THR2022 ASP2023 PRO2024 ILE2025 LYS2026 GLU2027 SER2028 SER2029 TRP2030 PRO2031 GLN2032 GLY2033 PHE2034 GLY2035 GLN2036 LEU2037 THR2038 GLN2039 LEU2040 GLY2041 MET2042 GLU2043 GLN2044 HIS2045 TYR2046 GLU2047 LEU2048 GLY2049 GLU2050 TYR2051 ILE2052 ARG2053 LYS2054 ARG2055 TYR2056 ARG2057 LYS2058 PHE2059 LEU2060 ASN2061 GLU2062 SER2063 TYR2064 LYS2065 HIS2066 GLU2067 GLN2068 VAL2069 TYR2070 ILE2071 ARG2072 SER2073 THR2074 ASP2075 VAL2076 ASP2077 ARG2078 THR2079 LEU2080 MET2081 SER2082 ALA2083 MET2084 THR2085 ASN2086 LEU2087 ALA2088 ALA2089 LEU2090 PHE2091 PRO2092 PRO2093 GLU2094 GLY2095 VAL2096 SER2097 ILE2098 TRP2099 ASN2100 PRO2101 ILE2102 LEU2103 LEU2104 TRP2105 GLN2106 PRO2107 ILE2108 PRO2109 VAL2110 HIS2111 THR2112 VAL2113 PRO2114 LEU2115 SER2116 GLU2117 ASP2118 GLN2119 LEU2120 LEU2121 TYR2122 LEU2123 PRO2124 PHE2125 ARG2126 ASN2127 CYS2128 PRO2129 ARG2130 PHE2131 GLN2132 GLU2133 LEU2134 GLU2135 SER2136 GLU2137 THR2138 LEU2139 LYS2140 SER2141 GLU2142 GLU2143 PHE2144 GLN2145 LYS2146 ARG2147 LEU2148 HIS2149 PRO2150 TYR2151 LYS2152 ASP2153 PHE2154 ILE2155 ALA2156 THR2157 LEU2158 GLY2159 LYS2160 LEU2161 SER2162 GLY2163 LEU2164 HIS2165 GLY2166 GLN2167 ASP2168 LEU2169 PHE2170 GLY2171 ILE2172 TRP2173 SER2174 LYS2175 VAL2176 TYR2177 ASP2178 PRO2179 LEU2180 TYR2181 CYS2182 GLU2183 SER2184 VAL2185 HIS2186 ASN2187 PHE2188 THR2189 LEU2190 PRO2191 SER2192 TRP2193 ALA2194 THR2195 GLU2196 ASP2197 THR2198 MET2199 THR2200 LYS2201 LEU2202 ARG2203 GLU2204 LEU2205 SER2206 GLU2207 LEU2208 SER2209 LEU2210 LEU2211 SER2212 LEU2213 TYR2214 GLY2215 ILE2216 HIS2217 LYS2218 GLN2219 LYS2220 GLU2221 LYS2222 SER2223 ARG2224 LEU2225 GLN2226 GLY2227 GLY2228 VAL2229 LEU2230 VAL2231 ASN2232 GLU2233 ILE2234 LEU2235 ASN2236 HIS2237 MET2238 LYS2239 ARG2240 ALA2241 THR2242 GLN2243 ILE2244 PRO2245 SER2246 TYR2247 LYS2248 LYS2249 LEU2250 ILE2251 MET2252 TYR2253 SER2254 ALA2255 HIS2256 ASP2257 THR2258 THR2259 VAL2260 SER2261 GLY2262 LEU2263 GLN2264 MET2265 ALA2266 LEU2267 ASP2268 VAL2269 TYR2270 ASN2271 GLY2272 LEU2273 LEU2274 PRO2275 PRO2276 TYR2277 ALA2278 SER2279 CYS2280 HIS2281 LEU2282 THR2283 GLU2284 LEU2285 TYR2286 PHE2287 GLU2288 LYS2289 GLY2290 GLU2291 TYR2292 PHE2293 VAL2294 GLU2295 MET2296 TYR2297 TYR2298 ARG2299 ASN2300 GLU2301 THR2302 GLN2303 HIS2304 GLU2305 PRO2306 TYR2307 PRO2308 LEU2309 MET2310 LEU2311 PRO2312 GLY2313 CYS2314 SER2315 PRO2316 SER2317 CYS2318 PRO2319 LEU2320 GLU2321 ARG2322 PHE2323 ALA2324 GLU2325 LEU2326 VAL2327 GLY2328 PRO2329 VAL2330 ILE2331 PRO2332 GLN2333 ASP2334 TRP2335 SER2336 THR2337 GLU2338 CYS2339 MET2340 THR2341
Unit 4 LYS3000 GLU3001 LEU3002 LYS3003 PHE3004 VAL3005 THR3006 LEU3007 VAL3008 PHE3009 ARG3010 HIS3011 GLY3012 ASP3013 ARG3014 SER3015 PRO3016 ILE3017 ASP3018 THR3019 PHE3020 PRO3021 THR3022 ASP3023 PRO3024 ILE3025 LYS3026 GLU3027 SER3028 SER3029 TRP3030 PRO3031 GLN3032 GLY3033 PHE3034 GLY3035 GLN3036 LEU3037 THR3038 GLN3039 LEU3040 GLY3041 MET3042 GLU3043 GLN3044 HIS3045 TYR3046 GLU3047 LEU3048 GLY3049 GLU3050 TYR3051 ILE3052 ARG3053 LYS3054 ARG3055 TYR3056 ARG3057 LYS3058 PHE3059 LEU3060 ASN3061 GLU3062 SER3063 TYR3064 LYS3065 HIS3066 GLU3067 GLN3068 VAL3069 TYR3070 ILE3071 ARG3072 SER3073 THR3074 ASP3075 VAL3076 ASP3077 ARG3078 THR3079 LEU3080 MET3081 SER3082 ALA3083 MET3084 THR3085 ASN3086 LEU3087 ALA3088 ALA3089 LEU3090 PHE3091 PRO3092 PRO3093 GLU3094 GLY3095 VAL3096 SER3097 ILE3098 TRP3099 ASN3100 PRO3101 ILE3102 LEU3103 LEU3104 TRP3105 GLN3106 PRO3107 ILE3108 PRO3109 VAL3110 HIS3111 THR3112 VAL3113 PRO3114 LEU3115 SER3116 GLU3117 ASP3118 GLN3119 LEU3120 LEU3121 TYR3122 LEU3123 PRO3124 PHE3125 ARG3126 ASN3127 CYS3128 PRO3129 ARG3130 PHE3131 GLN3132 GLU3133 LEU3134 GLU3135 SER3136 GLU3137 THR3138 LEU3139 LYS3140 SER3141 GLU3142 GLU3143 PHE3144 GLN3145 LYS3146 ARG3147 LEU3148 HIS3149 PRO3150 TYR3151 LYS3152 ASP3153 PHE3154 ILE3155 ALA3156 THR3157 LEU3158 GLY3159 LYS3160 LEU3161 SER3162 GLY3163 LEU3164 HIS3165 GLY3166 GLN3167 ASP3168 LEU3169 PHE3170 GLY3171 ILE3172 TRP3173 SER3174 LYS3175 VAL3176 TYR3177 ASP3178 PRO3179 LEU3180 TYR3181 CYS3182 GLU3183 SER3184 VAL3185 HIS3186 ASN3187 PHE3188 THR3189 LEU3190 PRO3191 SER3192 TRP3193 ALA3194 THR3195 GLU3196 ASP3197 THR3198 MET3199 THR3200 LYS3201 LEU3202 ARG3203 GLU3204 LEU3205 SER3206 GLU3207 LEU3208 SER3209 LEU3210 LEU3211 SER3212 LEU3213 TYR3214 GLY3215 ILE3216 HIS3217 LYS3218 GLN3219 LYS3220 GLU3221 LYS3222 SER3223 ARG3224 LEU3225 GLN3226 GLY3227 GLY3228 VAL3229 LEU3230 VAL3231 ASN3232 GLU3233 ILE3234 LEU3235 ASN3236 HIS3237 MET3238 LYS3239 ARG3240 ALA3241 THR3242 GLN3243 ILE3244 PRO3245 SER3246 TYR3247 LYS3248 LYS3249 LEU3250 ILE3251 MET3252 TYR3253 SER3254 ALA3255 HIS3256 ASP3257 THR3258 THR3259 VAL3260 SER3261 GLY3262 LEU3263 GLN3264 MET3265 ALA3266 LEU3267 ASP3268 VAL3269 TYR3270 ASN3271 GLY3272 LEU3273 LEU3274 PRO3275 PRO3276 TYR3277 ALA3278 SER3279 CYS3280 HIS3281 LEU3282 THR3283 GLU3284 LEU3285 TYR3286 PHE3287 GLU3288 LYS3289 GLY3290 GLU3291 TYR3292 PHE3293 VAL3294 GLU3295 MET3296 TYR3297 TYR3298 ARG3299 ASN3300 GLU3301 THR3302 GLN3303 HIS3304 GLU3305 PRO3306 TYR3307 PRO3308 LEU3309 MET3310 LEU3311 PRO3312 GLY3313 CYS3314 SER3315 PRO3316 SER3317 CYS3318 PRO3319 LEU3320 GLU3321 ARG3322 PHE3323 ALA3324 GLU3325 LEU3326 VAL3327 GLY3328 PRO3329 VAL3330 ILE3331 PRO3332 GLN3333 ASP3334 TRP3335 SER3336 THR3337 GLU3338 CYS3339 MET3340 THR3341
Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2 MAN3
Unit 10 2BF6000 1PE7000 1PE7004 1PE7007
Unit 11 NDG5004 2BF6001 1PE7001 1PE7005
Unit 12 2BF6002 1PE7002 1PE7006
Unit 13 NAG5009 2BF6003 1PE7003
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany