1ND2 - Sequence, Chains, Asymmetric and Biological Units

• Title: THE STRUCTURE OF RHINOVIRUS 16
• Keywords: HRV 16, RHINOVIRUS, PICONAVIRIDAE, POCKET FACTOR, ICOSAHEDRAL VIRUS
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1ND2	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	COAT PROTEIN VP1	A	285	2287	0
2	Protein	COAT PROTEIN VP2	B	252	1977	0
3	Protein	COAT PROTEIN VP3	C	238	1845	0
4	Protein	COAT PROTEIN VP4	D	29	224	0
5	Ligand	COAT PROTEIN VP1	A	2	0	17
6	Ligand	COAT PROTEIN VP4	D	1	0	15
7	Water			493	0	493
total				1300	6333	525

Proteins

Unit 1	ASN 1 PRO 2 VAL 3 GLU 4 ARG 5 TYR 6 VAL 7 ASP 8 GLU 9 VAL 10 LEU 11 ASN 12 GLU 13 VAL 14 LEU 15 VAL 16 VAL 17 PRO 18 ASN 19 ILE 20 ASN 21 GLN 22 SER 23 HIS 24 PRO 25 THR 26 THR 27 SER 28 ASN 29 ALA 30 ALA 31 PRO 32 VAL 33 LEU 34 ASP 35 ALA 36 ALA 37 GLU 38 THR 39 GLY 40 HIS 41 THR 42 ASN 43 LYS 44 ILE 45 GLN 46 PRO 47 GLU 48 ASP 49 THR 50 ILE 51 GLU 52 THR 53 ARG 54 TYR 55 VAL 56 GLN 57 SER 58 SER 59 GLN 60 THR 61 LEU 62 ASP 63 GLU 64 MET 65 SER 66 VAL 67 GLU 68 SER 69 PHE 70 LEU 71 GLY 72 ARG 73 SER 74 GLY 75 CYS 76 ILE 77 HIS 78 GLU 79 SER 80 VAL 81 LEU 82 ASP 83 ILE 84 VAL 85 ASP 86 ASN 87 TYR 88 ASN 89 ASP 90 GLN 91 SER 92 PHE 93 THR 94 LYS 95 TRP 96 ASN 97 ILE 98 ASN 99 LEU 100 GLN 101 GLU 102 MET 103 ALA 104 GLN 105 ILE 106 ARG 107 ARG 108 LYS 109 PHE 110 GLU 111 MET 112 PHE 113 THR 114 TYR 115 ALA 116 ARG 117 PHE 118 ASP 119 SER 120 GLU 121 ILE 122 THR 123 MET 124 VAL 125 PRO 126 SER 127 VAL 128 ALA 129 ALA 130 LYS 131 ASP 132 GLY 133 HIS 134 ILE 135 GLY 136 HIS 137 ILE 138 VAL 139 MET 140 GLN 141 TYR 142 MET 143 TYR 144 VAL 145 PRO 146 PRO 147 GLY 148 ALA 149 PRO 150 ILE 151 PRO 152 THR 153 THR 154 ARG 155 ASP 156 ASP 157 TYR 158 ALA 159 TRP 160 GLN 161 SER 162 GLY 163 THR 164 ASN 165 ALA 166 SER 167 VAL 168 PHE 169 TRP 170 GLN 171 HIS 172 GLY 173 GLN 174 PRO 175 PHE 176 PRO 177 ARG 178 PHE 179 SER 180 LEU 181 PRO 182 PHE 183 LEU 184 SER 185 ILE 186 ALA 187 SER 188 ALA 189 TYR 190 TYR 191 MET 192 PHE 193 TYR 194 ASP 195 GLY 196 TYR 197 ASP 198 GLY 199 ASP 200 THR 201 TYR 202 LYS 203 SER 204 ARG 205 TYR 206 GLY 207 THR 208 VAL 209 VAL 210 THR 211 ASN 212 ASP 213 MET 214 GLY 215 THR 216 LEU 217 CYS 218 SER 219 ARG 220 ILE 221 VAL 222 THR 223 SER 224 GLU 225 GLN 226 LEU 227 HIS 228 LYS 229 VAL 230 LYS 231 VAL 232 VAL 233 THR 234 ARG 235 ILE 236 TYR 237 HIS 238 LYS 239 ALA 240 LYS 241 HIS 242 THR 243 LYS 244 ALA 245 TRP 246 CYS 247 PRO 248 ARG 249 PRO 250 PRO 251 ARG 252 ALA 253 VAL 254 GLN 255 TYR 256 SER 257 HIS 258 THR 259 HIS 260 THR 261 THR 262 ASN 263 TYR 264 LYS 265 LEU 266 SER 267 SER 268 GLU 269 VAL 270 HIS 271 ASN 272 ASP 273 VAL 274 ALA 275 ILE 276 ARG 277 PRO 278 ARG 279 THR 280 ASN 281 LEU 282 THR 283 THR 284 VAL 285
Unit 2	SER 10 ASP 11 ARG 12 ILE 13 ILE 14 GLN 15 ILE 16 THR 17 ARG 18 GLY 19 ASP 20 SER 21 THR 22 ILE 23 THR 24 SER 25 GLN 26 ASP 27 VAL 28 ALA 29 ASN 30 ALA 31 VAL 32 VAL 33 GLY 34 TYR 35 GLY 36 VAL 37 TRP 38 PRO 39 HIS 40 TYR 41 LEU 42 THR 43 PRO 44 GLN 45 ASP 46 ALA 47 THR 48 ALA 49 ILE 50 ASP 51 LYS 52 PRO 53 THR 54 GLN 55 PRO 56 ASP 57 THR 58 SER 59 SER 60 ASN 61 ARG 62 PHE 63 TYR 64 THR 65 LEU 66 ASP 67 SER 68 LYS 69 MET 70 TRP 71 ASN 72 SER 73 THR 74 SER 75 LYS 76 GLY 77 TRP 78 TRP 79 TRP 80 LYS 81 LEU 82 PRO 83 ASP 84 ALA 85 LEU 86 LYS 87 ASP 88 MET 89 GLY 90 ILE 91 PHE 92 GLY 93 GLU 94 ASN 95 MET 96 PHE 97 TYR 98 HIS 99 PHE 100 LEU 101 GLY 102 ARG 103 SER 104 GLY 105 TYR 106 THR 107 VAL 108 HIS 109 VAL 110 GLN 111 CYS 112 ASN 113 ALA 114 SER 115 LYS 116 PHE 117 HIS 118 GLN 119 GLY 120 THR 121 LEU 122 LEU 123 VAL 124 VAL 125 MET 126 ILE 127 PRO 128 GLU 129 HIS 130 GLN 131 LEU 132 ALA 133 THR 134 VAL 135 ASN 136 LYS 137 GLY 138 ASN 139 VAL 140 ASN 141 ALA 142 GLY 143 TYR 144 LYS 145 TYR 146 THR 147 HIS 148 PRO 149 GLY 150 GLU 151 ALA 152 GLY 153 ARG 154 GLU 155 VAL 156 GLY 157 THR 158 GLN 159 VAL 160 GLU 161 ASN 162 GLU 163 LYS 164 GLN 165 PRO 166 SER 167 ASP 168 ASP 169 ASN 170 TRP 171 LEU 172 ASN 173 PHE 174 ASP 175 GLY 176 THR 177 LEU 178 LEU 179 GLY 180 ASN 181 LEU 182 LEU 183 ILE 184 PHE 185 PRO 186 HIS 187 GLN 188 PHE 189 ILE 190 ASN 191 LEU 192 ARG 193 SER 194 ASN 195 ASN 196 SER 197 ALA 198 THR 199 LEU 200 ILE 201 VAL 202 PRO 203 TYR 204 VAL 205 ASN 206 ALA 207 VAL 208 PRO 209 MET 210 ASP 211 SER 212 MET 213 VAL 214 ARG 215 HIS 216 ASN 217 ASN 218 TRP 219 SER 220 LEU 221 VAL 222 ILE 223 ILE 224 PRO 225 VAL 226 CYS 227 GLN 228 LEU 229 GLN 230 SER 231 ASN 232 ASN 233 ILE 234 SER 235 ASN 236 ILE 237 VAL 238 PRO 239 ILE 240 THR 241 VAL 242 SER 243 ILE 244 SER 245 PRO 246 MET 247 CYS 248 ALA 249 GLU 250 PHE 251 SER 252 GLY 253 ALA 254 ARG 255 ALA 256 LYS 257 THR 258 VAL 259 VAL 260 GLN 261
Unit 3	GLY 1 LEU 2 PRO 3 VAL 4 TYR 5 VAL 6 THR 7 PRO 8 GLY 9 SER 10 GLY 11 GLN 12 PHE 13 MET 14 THR 15 THR 16 ASP 17 ASP 18 MET 19 GLN 20 SER 21 PRO 22 CYS 23 ALA 24 LEU 25 PRO 26 TRP 27 TYR 28 HIS 29 PRO 30 THR 31 LYS 32 GLU 33 ILE 34 PHE 35 ILE 36 PRO 37 GLY 38 GLU 39 VAL 40 LYS 41 ASN 42 LEU 43 ILE 44 GLU 45 MET 46 CYS 47 GLN 48 VAL 49 ASP 50 THR 51 LEU 52 ILE 53 PRO 54 ILE 55 ASN 56 SER 57 THR 58 GLN 59 SER 60 ASN 61 ILE 62 GLY 63 ASN 64 VAL 65 SER 66 MET 67 TYR 68 THR 69 VAL 70 THR 71 LEU 72 SER 73 PRO 74 GLN 75 THR 76 LYS 77 LEU 78 ALA 79 GLU 80 GLU 81 ILE 82 PHE 83 ALA 84 ILE 85 LYS 86 VAL 87 ASP 88 ILE 89 ALA 90 SER 91 HIS 92 PRO 93 LEU 94 ALA 95 THR 96 THR 97 LEU 98 ILE 99 GLY 100 GLU 101 ILE 102 ALA 103 SER 104 TYR 105 PHE 106 THR 107 HIS 108 TRP 109 THR 110 GLY 111 SER 112 LEU 113 ARG 114 PHE 115 SER 116 PHE 117 MET 118 PHE 119 CYS 120 GLY 121 THR 122 ALA 123 ASN 124 THR 125 THR 126 LEU 127 LYS 128 VAL 129 LEU 130 LEU 131 ALA 132 TYR 133 THR 134 PRO 135 PRO 136 GLY 137 ILE 138 GLY 139 LYS 140 PRO 141 ARG 142 SER 143 ARG 144 LYS 145 GLU 146 ALA 147 MET 148 LEU 149 GLY 150 THR 151 HIS 152 VAL 153 VAL 154 TRP 155 ASP 156 VAL 157 GLY 158 LEU 159 GLN 160 SER 161 THR 162 VAL 163 SER 164 LEU 165 VAL 166 VAL 167 PRO 168 TRP 169 ILE 170 SER 171 ALA 172 SER 173 GLN 174 TYR 175 ARG 176 PHE 177 THR 178 THR 179 PRO 180 ASP 181 THR 182 TYR 183 SER 184 SER 185 ALA 186 GLY 187 TYR 188 ILE 189 THR 190 CYS 191 TRP 192 TYR 193 GLN 194 THR 195 ASN 196 PHE 197 VAL 198 VAL 199 PRO 200 PRO 201 ASN 202 THR 203 PRO 204 ASN 205 THR 206 ALA 207 GLU 208 MET 209 LEU 210 CYS 211 PHE 212 VAL 213 SER 214 GLY 215 CYS 216 LYS 217 ASP 218 PHE 219 CYS 220 LEU 221 ARG 222 MET 223 ALA 224 ARG 225 ASP 226 THR 227 ASP 228 LEU 229 HIS 230 LYS 231 GLN 232 THR 233 GLY 234 PRO 235 ILE 236 THR 237 GLN 238
Unit 4	GLY 1 ALA 2 GLN 3 VAL 4 SER 5 ARG 6 GLN 7 SER 23 LEU 24 ASN 25 TYR 26 PHE 27 ASN 28 ILE 29 ASN 30 TYR 31 PHE 32 LYS 33 ASP 34 ALA 35 ALA 36 SER 37 SER 38 GLY 39 ALA 40 SER 41 ARG 42 LEU 43 ASP 44

Ligands

Unit 5	ZN 6000 MYR 6001
Unit 6	MYR 4000