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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MONOCLONAL ANTIBODY 2D12.5 FAB COMPLEXE DOTA
Keywords ANTIBODY-DOTA COMPLEX, RARE EARTH, DOTA, METAL CHELATE, GADO GAMMA TURN, N-LINKED GLYCOSYLATION, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1NC4     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN  A 211 1600 0
2  Protein    B 219 1650 8
3  Protein   MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN  C 215 1627 0
4  Protein    D 215 1633 0
5  Ligand   MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN  A 1 0 1
6  Ligand    B 2 0 39
7  Ligand   MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN  C 1 0 1
8  Ligand    D 3 0 53
9 Water     332 0 332
total       1199 6510 434

Proteins
Unit 1 GLN1 ALA2 VAL3 VAL4 THR5 GLN6 GLU7 SER8 ALA9 LEU10 THR11 THR12 SER13 PRO14 GLY15 GLU16 THR17 VAL18 THR19 LEU20 THR21 CYS22 ARG23 SER24 SER25 THR26 GLY27 ALA28 VAL29 THR30 THR31 SER32 ASN33 TYR34 ALA35 ASN36 TRP37 VAL38 GLN39 GLU40 LYS41 PRO42 ASP43 HIS44 LEU45 PHE46 THR47 GLY48 LEU49 ILE50 GLY51 GLY52 ASN53 ASN54 ASN55 ARG56 PRO57 PRO58 GLY59 VAL60 PRO61 ALA62 ARG63 PHE64 SER65 GLY66 SER67 LEU68 ILE69 GLY70 ASP71 LYS72 ALA73 ALA74 LEU75 THR76 ILE77 ALA78 GLY79 THR80 GLN81 THR82 GLU83 ASP84 GLU85 ALA86 ILE87 TYR88 PHE89 CYS90 ALA91 LEU92 TRP93 TYR94 SER95 ASN96 HIS97 TRP98 VAL99 PHE100 GLY101 GLY102 GLY103 THR104 ARG105 LEU106 THR107 VAL108 LEU109 GLY110 GLN111 PRO112 LYS113 SER114 SER115 PRO116 SER117 VAL118 THR119 LEU120 PHE121 PRO122 PRO123 SER124 SER125 GLU126 GLU127 LEU128 GLU129 THR130 ASN131 LYS132 ALA133 THR134 LEU135 VAL136 CYS137 THR138 ILE139 THR140 ASP141 PHE142 TYR143 PRO144 GLY145 VAL146 VAL147 THR148 VAL149 ASP150 TRP151 LYS152 VAL153 ASP154 GLY155 THR156 PRO157 VAL158 THR159 GLN160 GLY161 MET162 GLU163 THR164 THR165 GLN166 PRO167 SER168 LYS169 GLN170 SER171 ASN172 ASN173 LYS174 TYR175 MET176 ALA177 SER178 SER179 TYR180 LEU181 THR182 LEU183 THR184 ALA185 ARG186 ALA187 TRP188 GLU189 ARG190 HIS191 SER192 SER193 TYR194 SER195 CYS196 GLN197 VAL198 THR199 HIS200 GLU201 GLY202 HIS203 THR204 VAL205 GLU206 LYS207 SER208 LEU209 SER210 PRO211
Unit 2 PCA1 VAL2 LYS3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 GLN13 PRO14 SER15 GLN16 SER17 LEU18 SER19 ILE20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 THR30 ASP31 TYR32 GLY33 VAL34 HIS35 TRP36 VAL37 ARG38 GLN39 SER40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 SER53 GLY54 GLY55 GLY56 THR57 ALA58 TYR59 THR60 ALA61 ALA62 PHE63 ILE64 SER65 ARG66 LEU67 ASN68 ILE69 TYR70 LYS71 ASP72 ASN73 SER74 LYS75 ASN76 GLN77 VAL78 PHE79 PHE80 GLU81 MET82 ASN83 SER84 LEU85 GLN86 ALA87 ASN88 ASP89 THR90 ALA91 MET92 TYR93 TYR94 CYS95 ALA96 ARG97 ARG98 GLY99 SER100 TYR101 PRO102 TYR103 ASN104 TYR105 PHE106 ASP107 VAL108 TRP109 GLY110 GLN111 GLY112 THR113 THR114 VAL115 THR116 VAL117 SER118 SER119 ALA120 LYS121 THR122 THR123 PRO124 PRO125 SER126 VAL127 TYR128 PRO129 LEU130 ALA131 PRO132 GLY133 SER134 ALA135 ALA136 GLN137 THR138 ASN139 SER140 MET141 VAL142 THR143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 GLY150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 THR159 TRP160 ASN161 SER162 GLY163 SER164 LEU165 SER166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 ASP179 LEU180 TYR181 THR182 LEU183 SER184 SER185 SER186 VAL187 THR188 VAL189 PRO190 SER191 SER192 THR193 TRP194 PRO195 SER196 GLU197 THR198 VAL199 THR200 CYS201 ASN202 VAL203 ALA204 HIS205 PRO206 ALA207 SER208 SER209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 ILE216 VAL217 PRO218 ARG219
Unit 3 GLN1 ALA2 VAL3 VAL4 THR5 GLN6 GLU7 SER8 ALA9 LEU10 THR11 THR12 SER13 PRO14 GLY15 GLU16 THR17 VAL18 THR19 LEU20 THR21 CYS22 ARG23 SER24 SER25 THR26 GLY27 ALA28 VAL29 THR30 THR31 SER32 ASN33 TYR34 ALA35 ASN36 TRP37 VAL38 GLN39 GLU40 LYS41 PRO42 ASP43 HIS44 LEU45 PHE46 THR47 GLY48 LEU49 ILE50 GLY51 GLY52 ASN53 ASN54 ASN55 ARG56 PRO57 PRO58 GLY59 VAL60 PRO61 ALA62 ARG63 PHE64 SER65 GLY66 SER67 LEU68 ILE69 GLY70 ASP71 LYS72 ALA73 ALA74 LEU75 THR76 ILE77 ALA78 GLY79 THR80 GLN81 THR82 GLU83 ASP84 GLU85 ALA86 ILE87 TYR88 PHE89 CYS90 ALA91 LEU92 TRP93 TYR94 SER95 ASN96 HIS97 TRP98 VAL99 PHE100 GLY101 GLY102 GLY103 THR104 ARG105 LEU106 THR107 VAL108 LEU109 GLY110 GLN111 PRO112 LYS113 SER114 SER115 PRO116 SER117 VAL118 THR119 LEU120 PHE121 PRO122 PRO123 SER124 SER125 GLU126 GLU127 LEU128 GLU129 THR130 ASN131 LYS132 ALA133 THR134 LEU135 VAL136 CYS137 THR138 ILE139 THR140 ASP141 PHE142 TYR143 PRO144 GLY145 VAL146 VAL147 THR148 VAL149 ASP150 TRP151 LYS152 VAL153 ASP154 GLY155 THR156 PRO157 VAL158 THR159 GLN160 GLY161 MET162 GLU163 THR164 THR165 GLN166 PRO167 SER168 LYS169 GLN170 SER171 ASN172 ASN173 LYS174 TYR175 MET176 ALA177 SER178 SER179 TYR180 LEU181 THR182 LEU183 THR184 ALA185 ARG186 ALA187 TRP188 GLU189 ARG190 HIS191 SER192 SER193 TYR194 SER195 CYS196 GLN197 VAL198 THR199 HIS200 GLU201 GLY202 HIS203 THR204 VAL205 GLU206 LYS207 SER208 LEU209 SER210 PRO211 ALA212 GLU213 CYS214 SER215
Unit 4 GLN1 VAL2 LYS3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 GLN13 PRO14 SER15 GLN16 SER17 LEU18 SER19 ILE20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 THR30 ASP31 TYR32 GLY33 VAL34 HIS35 TRP36 VAL37 ARG38 GLN39 SER40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 SER53 GLY54 GLY55 GLY56 THR57 ALA58 TYR59 THR60 ALA61 ALA62 PHE63 ILE64 SER65 ARG66 LEU67 ASN68 ILE69 TYR70 LYS71 ASP72 ASN73 SER74 LYS75 ASN76 GLN77 VAL78 PHE79 PHE80 GLU81 MET82 ASN83 SER84 LEU85 GLN86 ALA87 ASN88 ASP89 THR90 ALA91 MET92 TYR93 TYR94 CYS95 ALA96 ARG97 ARG98 GLY99 SER100 TYR101 PRO102 TYR103 ASN104 TYR105 PHE106 ASP107 VAL108 TRP109 GLY110 GLN111 GLY112 THR113 THR114 VAL115 THR116 VAL117 SER118 SER119 ALA120 LYS121 THR122 THR123 PRO124 PRO125 SER126 VAL127 TYR128 PRO129 LEU130 ALA131 PRO132 GLY133 SER134 SER140 MET141 VAL142 THR143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 GLY150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 THR159 TRP160 ASN161 SER162 GLY163 SER164 LEU165 SER166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 ASP179 LEU180 TYR181 THR182 LEU183 SER184 SER185 SER186 VAL187 THR188 VAL189 PRO190 SER191 SER192 THR193 TRP194 PRO195 SER196 GLU197 THR198 VAL199 THR200 CYS201 ASN202 VAL203 ALA204 HIS205 PRO206 ALA207 SER208 SER209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 ILE216 VAL217 PRO218 ARG219 ASP220

Ligands
Unit 5 CL504
Unit 6 DOF500 GD3502
Unit 7 CL505
Unit 8 NAG400 DOF501 GD3503

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany