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Sequence, Chains, Asymmetric and Biological Units

Title DECODING CENTER & PEPTIDYL TRANSFERASE CENTER FROM THE X-RAY OF THE THERMUS THERMOPHILUS 70S RIBOSOME, ALIGNED TO THE LO RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
Keywords RF2, RELEASE COMPLEX, CONFORMATIONAL CHANGES, RIBOSOME
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1MVR     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    1 3 3 0
2  DNA    A 45 45 0
3  DNA    B 96 96 0
4  DNA    C 19 19 0
5  DNA    D 59 59 0
6  DNA    E 27 27 0
7  Protein   30S RIBOSOMAL PROTEIN S12  O 124 124 0
8  Protein   50S RIBOSOMAL PROTEIN L11  L 133 133 0
total       506 506 0

Proteins
Unit 7 PRO5 THR6 ILE7 ASN8 GLN9 LEU10 VAL11 ARG12 LYS13 GLY14 ARG15 GLU16 LYS17 VAL18 ARG19 LYS20 LYS21 SER22 LYS23 VAL24 PRO25 ALA26 LEU27 LYS28 GLY29 ALA30 PRO31 PHE32 ARG33 ARG34 GLY35 VAL36 CYS37 THR38 VAL39 VAL40 ARG41 THR42 VAL43 THR44 PRO45 LYS46 LYS47 PRO48 ASN49 SER50 ALA51 LEU52 ARG53 LYS54 VAL55 ALA56 LYS57 VAL58 ARG59 LEU60 THR61 SER62 GLY63 TYR64 GLU65 VAL66 THR67 ALA68 TYR69 ILE70 PRO71 GLY72 GLU73 GLY74 HIS75 ASN76 LEU77 GLN78 GLU79 HIS80 SER81 VAL82 VAL83 LEU84 ILE85 ARG86 GLY87 GLY88 ARG89 VAL90 LYS91 ASP92 LEU93 PRO94 GLY95 VAL96 ARG97 TYR98 HIS99 ILE100 VAL101 ARG102 GLY103 VAL104 TYR105 ASP106 ALA107 ALA108 GLY109 VAL110 LYS111 ASP112 ARG113 LYS114 LYS115 SER116 ARG117 SER118 LYS119 TYR120 GLY121 THR122 LYS123 LYS124 PRO125 LYS126 GLU127 ALA128
Unit 8 GLN8 ILE9 LYS10 LEU11 GLN12 LEU13 PRO14 ALA15 GLY16 LYS17 ALA18 THR19 PRO20 ALA21 PRO22 PRO23 VAL24 GLY25 PRO26 ALA27 LEU28 GLY29 GLN30 HIS31 GLY32 VAL33 ASN34 ILE35 MET36 GLU37 PHE38 CYS39 LYS40 ARG41 PHE42 ASN43 ALA44 GLU45 THR46 ALA47 ASP48 LYS49 ALA50 GLY51 MET52 ILE53 LEU54 PRO55 VAL56 VAL57 ILE58 THR59 VAL60 TYR61 GLU62 ASP63 LYS64 SER65 PHE66 THR67 PHE68 ILE69 ILE70 LYS71 THR72 PRO73 PRO74 ALA75 SER76 PHE77 LEU78 LEU79 LYS80 LYS81 ALA82 ALA83 GLY84 ILE85 GLU86 LYS87 GLY88 SER89 SER90 GLU91 PRO92 LYS93 ARG94 LYS95 ILE96 VAL97 GLY98 LYS99 VAL100 THR101 ARG102 LYS103 GLN104 ILE105 GLU106 GLU107 ILE108 ALA109 LYS110 THR111 LYS112 MET113 PRO114 ASP115 LEU116 ASN117 ALA118 ASN119 SER120 LEU121 GLU122 ALA123 ALA124 MET125 LYS126 ILE127 ILE128 GLU129 GLY130 THR131 ALA132 LYS133 SER134 MET135 GLY136 ILE137 GLU138 VAL139 VAL140

Nucleic acids
Unit 1 U11 U12 U13
Unit 2 A1046 G1047 G1048 U1049 G1050 C1051 U1052 G1053 C1054 A1055 U1056 G1057 G1058 C1059 C1060 G1061 U1062 C1063 G1064 U1065 C1066 A1067 A1188 C1189 G1190 A1191 C1192 G1193 U1194 C1195 U1196 G1197 G1198 U1199 C1200 A1201 G1202 C1203 A1204 U1205 G1206 G1207 C1208 C1209 C1210
Unit 3 C1400 G1401 C1402 C1403 C1404 G1405 U1406 C1407 A1408 C1409 G1410 C1411 C1412 A1413 U1414 G1415 G1416 G1417 A1418 G1419 C1420 G1421 G1422 G1423 C1424 U1425 C1426 U1427 A1428 C1429 C1430 C1431 G1432 A1433 A1434 G1435 U1436 C1437 G1438 C1439 C1440 G1441 G1442 G1443 A1446 G1447 C1448 C1449 U1450 A1451 C1452 G1453 G1454 G1455 C1459 A1460 G1461 G1462 C1463 G1464 C1465 C1466 G1467 A1468 G1469 G1470 G1471 U1472 A1473 G1474 G1475 G1476 C1477 C1478 C1479 G1480 U1481 G1482 A1483 C1484 U1485 G1486 G1487 G1488 G1489 C1490 G1491 A1492 A1493 G1494 U1495 C1496 G1497 U1498 A1499 A1500
Unit 4 G1906 G1907 C1908 C1909 G1910 U1911 A1912 A1913 C1914 U1915 A1916 U1917 A1918 A1919 C1920 G1921 G1922 U1923 C1924
Unit 5 A2448 U2449 A2450 A2451 C2452 A2453 G2454 G2455 C2456 U2457 G2458 A2459 U2460 C2461 U2462 C2463 C2464 C2465 C2466 C2467 G2468 A2469 G2470 C2471 G2472 U2473 C2474 C2475 A2476 C2477 A2478 G2479 C2480 G2481 G2482 C2483 G2484 G2485 G2486 G2487 A2488 G2489 G2490 U2491 U2492 U2493 G2494 G2495 C2496 A2497 C2498 C2499 U2500 C2501 G2502 A2503 U2504 G2505 U2506
Unit 6 G2583 U2584 U2585 C2586 A2587 G2588 A2589 A2590 C2591 G2592 U2593 C2594 G2595 U2596 G2597 A2598 G2599 A2600 C2601 A2602 G2603 U2604 U2605 C2606 G2607 G2608 U2609

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany