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Sequence, Chains, Asymmetric and Biological Units

Title MODEL FOR THE CATALYTIC DOMAIN OF THE PROOFREADING EPSILON SUBUNIT OF E. COLI DNA POLYMERASE III BASED ON NMR STRUCTURAL DATA
Keywords PROTEIN-DNA COMPLEX, THEORETICAL MODEL, EXONUCLEASE
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1MGZ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE III, EPSILON CHAIN  A 186 2899 0
2  DNA    B 3 94 0
3  Ligand      2 0 2
4 Water     3 0 9
total       194 2993 11

Proteins
Unit 1 MET1 SER2 THR3 ALA4 ILE5 THR6 ARG7 GLN8 ILE9 VAL10 LEU11 ASP12 THR13 GLU14 THR15 THR16 GLY17 MET18 ASN19 GLN20 ILE21 GLY22 ALA23 HIS24 TYR25 GLU26 GLY27 HIS28 LYS29 ILE30 ILE31 GLU32 ILE33 GLY34 ALA35 VAL36 GLU37 VAL38 VAL39 ASN40 ARG41 ARG42 LEU43 THR44 GLY45 ASN46 ASN47 PHE48 HIS49 VAL50 TYR51 LEU52 LYS53 PRO54 ASP55 ARG56 LEU57 VAL58 ASP59 PRO60 GLU61 ALA62 PHE63 GLY64 VAL65 HIS66 GLY67 ILE68 ALA69 ASP70 GLU71 PHE72 LEU73 LEU74 ASP75 LYS76 PRO77 THR78 PHE79 ALA80 GLU81 VAL82 ALA83 ASP84 GLU85 PHE86 MET87 ASP88 TYR89 ILE90 ARG91 GLY92 ALA93 GLU94 LEU95 VAL96 ILE97 HIS98 ASN99 ALA100 ALA101 PHE102 ASP103 ILE104 GLY105 PHE106 MET107 ASP108 TYR109 GLU110 PHE111 SER112 LEU113 LEU114 LYS115 ARG116 ASP117 ILE118 PRO119 LYS120 THR121 ASN122 THR123 PHE124 CYS125 LYS126 VAL127 THR128 ASP129 SER130 LEU131 ALA132 VAL133 ALA134 ARG135 LYS136 MET137 PHE138 PRO139 GLY140 LYS141 ARG142 ASN143 SER144 LEU145 ASP146 ALA147 LEU148 CYS149 ALA150 ARG151 TYR152 GLU153 ILE154 ASP155 ASN156 SER157 LYS158 ARG159 THR160 LEU161 HIS162 GLY163 ALA164 LEU165 LEU166 ASP167 ALA168 GLN169 ILE170 LEU171 ALA172 GLU173 VAL174 TYR175 LEU176 ALA177 MET178 THR179 GLY180 GLY181 GLN182 THR183 SER184 MET185 ALA186

Nucleic acids
Unit 2 A187 C188 G189

Ligands
Unit 3 ZN190 MG191

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany