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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF WILD-TYPE AND MUTANT INTERNAL LOOPS FROM THE SL-1 DOMAIN OF THE HIV-1 PACKAGING SIGNAL
Keywords BASE TRIPLET, HIV, INTERNAL LOOP, PACKAGING SIGNAL, SL-1, S- TURN
Experiment NMR
Number of Models  15


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1M5L     released     available     available     Quaternary Structure Server  
NDB   1M5L                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 38 1235 0
total       38 1235 0

Nucleic acids
Unit 1 G1 C2 G3 C4 A5 G6 G7 A8 C9 U10 C11 G12 G13 C14 U15 U16 C17 U18 U19 C20 G21 G22 A23 A24 G25 G26 G27 A28 C29 G30 A31 G32 G33 G34 G35 C36 G37 C38

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany