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Sequence, Chains, Asymmetric and Biological Units

Title MODEL OF A LAMBDA REPRESSOR TETRAMER (TWO DIMERS) BOUND TO TWO ADJACENT OPERATOR SITES BASED ON 1KCA
Keywords FULL LAMBDA REPRESSOR, GENE REGULATION, OPERATOR SITES, PROTEIN/DNA
Experiment theoretical model
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1LWQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   REPRESSOR PROTEIN CI  A 236 1832 0
2  Protein   REPRESSOR PROTEIN CI  B 231 1792 0
3  Protein   REPRESSOR PROTEIN CI  C 236 1832 0
4  Protein   REPRESSOR PROTEIN CI  D 231 1792 0
5  DNA    E 44 896 0
6  DNA    F 44 902 0
total       1022 9046 0
Proteins
Unit 1 SER1 THR2 LYS3 LYS4 LYS5 PRO6 LEU7 THR8 GLN9 GLU10 GLN11 LEU12 GLU13 ASP14 ALA15 ARG16 ARG17 LEU18 LYS19 ALA20 ILE21 TYR22 GLU23 LYS24 LYS25 LYS26 ASN27 GLU28 LEU29 GLY30 LEU31 SER32 GLN33 GLU34 SER35 VAL36 ALA37 ASP38 LYS39 MET40 GLY41 MET42 GLY43 GLN44 SER45 GLY46 VAL47 GLY48 ALA49 LEU50 PHE51 ASN52 GLY53 ILE54 ASN55 ALA56 LEU57 ASN58 ALA59 TYR60 ASN61 ALA62 ALA63 LEU64 LEU65 ALA66 LYS67 ILE68 LEU69 LYS70 VAL71 SER72 VAL73 GLU74 GLU75 PHE76 SER77 PRO78 SER79 ILE80 ALA81 ARG82 GLU83 ILE84 TYR85 GLU86 MET87 TYR88 GLU89 ALA90 VAL91 SER92 MET93 GLN94 PRO95 SER96 LEU97 ARG98 SER99 GLU100 TYR101 GLU102 TYR103 PRO104 VAL105 PHE106 SER107 HIS108 VAL109 GLN110 ALA111 GLY112 MET113 PHE114 SER115 PRO116 GLU117 LEU118 ARG119 THR120 PHE121 THR122 LYS123 GLY124 ASP125 ALA126 GLU127 ARG128 TRP129 VAL130 SER131 THR132 THR133 LYS134 LYS135 ALA136 SER137 ASP138 SER139 ALA140 PHE141 TRP142 LEU143 GLU144 VAL145 GLU146 GLY147 ASN148 SER149 MET150 THR151 ALA152 PRO153 THR154 GLY155 SER156 LYS157 PRO158 SER159 PHE160 PRO161 ASP162 GLY163 MET164 LEU165 ILE166 LEU167 VAL168 ASP169 PRO170 GLU171 GLN172 ALA173 VAL174 GLU175 PRO176 GLY177 ASP178 PHE179 CYS180 ILE181 ALA182 ARG183 LEU184 GLY185 GLY186 ASP187 GLU188 PHE189 THR190 PHE191 LYS192 LYS193 LEU194 ILE195 ARG196 ASP197 SER198 GLY199 GLN200 VAL201 PHE202 LEU203 GLN204 PRO205 LEU206 ASN207 PRO208 GLN209 TYR210 PRO211 MET212 ILE213 PRO214 CYS215 ASN216 GLU217 SER218 CYS219 SER220 VAL221 VAL222 GLY223 LYS224 VAL225 ILE226 ALA227 SER228 GLN229 TRP230 PRO231 GLU232 GLU233 THR234 PHE235 GLY236
Unit 2 PRO6 LEU7 THR8 GLN9 GLU10 GLN11 LEU12 GLU13 ASP14 ALA15 ARG16 ARG17 LEU18 LYS19 ALA20 ILE21 TYR22 GLU23 LYS24 LYS25 LYS26 ASN27 GLU28 LEU29 GLY30 LEU31 SER32 GLN33 GLU34 SER35 VAL36 ALA37 ASP38 LYS39 MET40 GLY41 MET42 GLY43 GLN44 SER45 GLY46 VAL47 GLY48 ALA49 LEU50 PHE51 ASN52 GLY53 ILE54 ASN55 ALA56 LEU57 ASN58 ALA59 TYR60 ASN61 ALA62 ALA63 LEU64 LEU65 ALA66 LYS67 ILE68 LEU69 LYS70 VAL71 SER72 VAL73 GLU74 GLU75 PHE76 SER77 PRO78 SER79 ILE80 ALA81 ARG82 GLU83 ILE84 TYR85 GLU86 MET87 TYR88 GLU89 ALA90 VAL91 SER92 MET93 GLN94 PRO95 SER96 LEU97 ARG98 SER99 GLU100 TYR101 GLU102 TYR103 PRO104 VAL105 PHE106 SER107 HIS108 VAL109 GLN110 ALA111 GLY112 MET113 PHE114 SER115 PRO116 GLU117 LEU118 ARG119 THR120 PHE121 THR122 LYS123 GLY124 ASP125 ALA126 GLU127 ARG128 TRP129 VAL130 SER131 THR132 THR133 LYS134 LYS135 ALA136 SER137 ASP138 SER139 ALA140 PHE141 TRP142 LEU143 GLU144 VAL145 GLU146 GLY147 ASN148 SER149 MET150 THR151 ALA152 PRO153 THR154 GLY155 SER156 LYS157 PRO158 SER159 PHE160 PRO161 ASP162 GLY163 MET164 LEU165 ILE166 LEU167 VAL168 ASP169 PRO170 GLU171 GLN172 ALA173 VAL174 GLU175 PRO176 GLY177 ASP178 PHE179 CYS180 ILE181 ALA182 ARG183 LEU184 GLY185 GLY186 ASP187 GLU188 PHE189 THR190 PHE191 LYS192 LYS193 LEU194 ILE195 ARG196 ASP197 SER198 GLY199 GLN200 VAL201 PHE202 LEU203 GLN204 PRO205 LEU206 ASN207 PRO208 GLN209 TYR210 PRO211 MET212 ILE213 PRO214 CYS215 ASN216 GLU217 SER218 CYS219 SER220 VAL221 VAL222 GLY223 LYS224 VAL225 ILE226 ALA227 SER228 GLN229 TRP230 PRO231 GLU232 GLU233 THR234 PHE235 GLY236
Unit 3 SER1 THR2 LYS3 LYS4 LYS5 PRO6 LEU7 THR8 GLN9 GLU10 GLN11 LEU12 GLU13 ASP14 ALA15 ARG16 ARG17 LEU18 LYS19 ALA20 ILE21 TYR22 GLU23 LYS24 LYS25 LYS26 ASN27 GLU28 LEU29 GLY30 LEU31 SER32 GLN33 GLU34 SER35 VAL36 ALA37 ASP38 LYS39 MET40 GLY41 MET42 GLY43 GLN44 SER45 GLY46 VAL47 GLY48 ALA49 LEU50 PHE51 ASN52 GLY53 ILE54 ASN55 ALA56 LEU57 ASN58 ALA59 TYR60 ASN61 ALA62 ALA63 LEU64 LEU65 ALA66 LYS67 ILE68 LEU69 LYS70 VAL71 SER72 VAL73 GLU74 GLU75 PHE76 SER77 PRO78 SER79 ILE80 ALA81 ARG82 GLU83 ILE84 TYR85 GLU86 MET87 TYR88 GLU89 ALA90 VAL91 SER92 MET93 GLN94 PRO95 SER96 LEU97 ARG98 SER99 GLU100 TYR101 GLU102 TYR103 PRO104 VAL105 PHE106 SER107 HIS108 VAL109 GLN110 ALA111 GLY112 MET113 PHE114 SER115 PRO116 GLU117 LEU118 ARG119 THR120 PHE121 THR122 LYS123 GLY124 ASP125 ALA126 GLU127 ARG128 TRP129 VAL130 SER131 THR132 THR133 LYS134 LYS135 ALA136 SER137 ASP138 SER139 ALA140 PHE141 TRP142 LEU143 GLU144 VAL145 GLU146 GLY147 ASN148 SER149 MET150 THR151 ALA152 PRO153 THR154 GLY155 SER156 LYS157 PRO158 SER159 PHE160 PRO161 ASP162 GLY163 MET164 LEU165 ILE166 LEU167 VAL168 ASP169 PRO170 GLU171 GLN172 ALA173 VAL174 GLU175 PRO176 GLY177 ASP178 PHE179 CYS180 ILE181 ALA182 ARG183 LEU184 GLY185 GLY186 ASP187 GLU188 PHE189 THR190 PHE191 LYS192 LYS193 LEU194 ILE195 ARG196 ASP197 SER198 GLY199 GLN200 VAL201 PHE202 LEU203 GLN204 PRO205 LEU206 ASN207 PRO208 GLN209 TYR210 PRO211 MET212 ILE213 PRO214 CYS215 ASN216 GLU217 SER218 CYS219 SER220 VAL221 VAL222 GLY223 LYS224 VAL225 ILE226 ALA227 SER228 GLN229 TRP230 PRO231 GLU232 GLU233 THR234 PHE235 GLY236
Unit 4 PRO6 LEU7 THR8 GLN9 GLU10 GLN11 LEU12 GLU13 ASP14 ALA15 ARG16 ARG17 LEU18 LYS19 ALA20 ILE21 TYR22 GLU23 LYS24 LYS25 LYS26 ASN27 GLU28 LEU29 GLY30 LEU31 SER32 GLN33 GLU34 SER35 VAL36 ALA37 ASP38 LYS39 MET40 GLY41 MET42 GLY43 GLN44 SER45 GLY46 VAL47 GLY48 ALA49 LEU50 PHE51 ASN52 GLY53 ILE54 ASN55 ALA56 LEU57 ASN58 ALA59 TYR60 ASN61 ALA62 ALA63 LEU64 LEU65 ALA66 LYS67 ILE68 LEU69 LYS70 VAL71 SER72 VAL73 GLU74 GLU75 PHE76 SER77 PRO78 SER79 ILE80 ALA81 ARG82 GLU83 ILE84 TYR85 GLU86 MET87 TYR88 GLU89 ALA90 VAL91 SER92 MET93 GLN94 PRO95 SER96 LEU97 ARG98 SER99 GLU100 TYR101 GLU102 TYR103 PRO104 VAL105 PHE106 SER107 HIS108 VAL109 GLN110 ALA111 GLY112 MET113 PHE114 SER115 PRO116 GLU117 LEU118 ARG119 THR120 PHE121 THR122 LYS123 GLY124 ASP125 ALA126 GLU127 ARG128 TRP129 VAL130 SER131 THR132 THR133 LYS134 LYS135 ALA136 SER137 ASP138 SER139 ALA140 PHE141 TRP142 LEU143 GLU144 VAL145 GLU146 GLY147 ASN148 SER149 MET150 THR151 ALA152 PRO153 THR154 GLY155 SER156 LYS157 PRO158 SER159 PHE160 PRO161 ASP162 GLY163 MET164 LEU165 ILE166 LEU167 VAL168 ASP169 PRO170 GLU171 GLN172 ALA173 VAL174 GLU175 PRO176 GLY177 ASP178 PHE179 CYS180 ILE181 ALA182 ARG183 LEU184 GLY185 GLY186 ASP187 GLU188 PHE189 THR190 PHE191 LYS192 LYS193 LEU194 ILE195 ARG196 ASP197 SER198 GLY199 GLN200 VAL201 PHE202 LEU203 GLN204 PRO205 LEU206 ASN207 PRO208 GLN209 TYR210 PRO211 MET212 ILE213 PRO214 CYS215 ASN216 GLU217 SER218 CYS219 SER220 VAL221 VAL222 GLY223 LYS224 VAL225 ILE226 ALA227 SER228 GLN229 TRP230 PRO231 GLU232 GLU233 THR234 PHE235 GLY236
Nucleic acids
Unit 5 T1 A2 T3 A4 T5 C6 A7 C8 C9 G10 C11 C12 A13 G14 T15 G16 G17 T18 A19 T20 T21 T22 A23 T24 G25 A26 T27 A28 T29 C30 A31 C32 C33 G34 C35 C36 A37 G38 T39 G40 G41 T42 A43 T44
Unit 6 A45 A46 T47 A48 C49 C50 A51 C52 T53 G54 G55 C56 G57 G58 T59 G60 A61 T62 A63 T64 C65 A66 T67 A68 A69 A70 T71 A72 C73 C74 A75 C76 T77 G78 G79 C80 G81 G82 T83 G84 A85 T86 A87 T88
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany