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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF METHANOL DEHYDROGENASE FROM P. DENITRIFICANS
Keywords HEAVY SUBUNITS: 8-FOLD BETA-PROPELLER SUPERBARREL, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1LRW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   METHANOL DEHYDROGENASE SUBUNIT 1  A 600 4702 0
2  Protein   METHANOL DEHYDROGENASE SUBUNIT 2  B 83 665 0
3  Protein   METHANOL DEHYDROGENASE SUBUNIT 1  C 600 4702 0
4  Protein   METHANOL DEHYDROGENASE SUBUNIT 2  D 83 665 0
5  Ligand   METHANOL DEHYDROGENASE SUBUNIT 1  A 2 0 25
6  Ligand   METHANOL DEHYDROGENASE SUBUNIT 1  C 2 0 25
7 Water     403 0 403
total       1773 10734 453
Proteins
Unit 1 ASN1 ASP2 GLN3 LEU4 VAL5 GLU6 LEU7 ALA8 LYS9 ASP10 PRO11 ALA12 ASN13 TRP14 VAL15 MET16 THR17 GLY18 ARG19 ASP20 TYR21 ASN22 ALA23 GLN24 ASN25 TYR26 SER27 GLU28 MET29 THR30 ASP31 ILE32 ASN33 LYS34 GLU35 ASN36 VAL37 LYS38 GLN39 LEU40 ARG41 PRO42 ALA43 TRP44 SER45 PHE46 SER47 THR48 GLY49 VAL50 LEU51 HIS52 GLY53 HIS54 GLU55 GLY56 THR57 PRO58 LEU59 VAL60 VAL61 GLY62 ASP63 ARG64 MET65 PHE66 ILE67 HIS68 THR69 PRO70 PHE71 PRO72 ASN73 THR74 THR75 PHE76 ALA77 LEU78 ASP79 LEU80 ASN81 GLU82 PRO83 GLY84 LYS85 ILE86 LEU87 TRP88 GLN89 ASN90 LYS91 PRO92 LYS93 GLN94 ASN95 PRO96 THR97 ALA98 ARG99 THR100 VAL101 ALA102 CYS103 CYS104 ASP105 VAL106 VAL107 ASN108 ARG109 GLY110 LEU111 ALA112 TYR113 TRP114 PRO115 GLY116 ASP117 ASP118 GLN119 VAL120 LYS121 PRO122 LEU123 ILE124 PHE125 ARG126 THR127 GLN128 LEU129 ASP130 GLY131 HIS132 ILE133 VAL134 ALA135 MET136 ASP137 ALA138 GLU139 THR140 GLY141 GLU142 THR143 ARG144 TRP145 ILE146 MET147 GLU148 ASN149 SER150 ASP151 ILE152 LYS153 VAL154 GLY155 SER156 THR157 LEU158 THR159 ILE160 ALA161 PRO162 TYR163 VAL164 ILE165 LYS166 ASP167 LEU168 VAL169 LEU170 VAL171 GLY172 SER173 SER174 GLY175 ALA176 GLU177 LEU178 GLY179 VAL180 ARG181 GLY182 TYR183 VAL184 THR185 ALA186 TYR187 ASP188 VAL189 LYS190 SER191 GLY192 GLU193 MET194 ARG195 TRP196 ARG197 ALA198 PHE199 ALA200 THR201 GLY202 PRO203 ASP204 GLU205 GLU206 LEU207 LEU208 LEU209 ALA210 GLU211 ASP212 PHE213 ASN214 ALA215 PRO216 ASN217 PRO218 HIS219 TYR220 GLY221 GLN222 LYS223 ASN224 LEU225 GLY226 LEU227 GLU228 THR229 TRP230 GLU231 GLY232 ASP233 ALA234 TRP235 LYS236 ILE237 GLY238 GLY239 GLY240 THR241 ASN242 TRP243 GLY244 TRP245 TYR246 ALA247 TYR248 ASP249 PRO250 GLU251 VAL252 ASP253 LEU254 PHE255 TYR256 TYR257 GLY258 SER259 GLY260 ASN261 PRO262 ALA263 PRO264 TRP265 ASN266 GLU267 THR268 MET269 ARG270 PRO271 GLY272 ASP273 ASN274 LYS275 TRP276 THR277 MET278 ALA279 ILE280 TRP281 GLY282 ARG283 GLU284 ALA285 THR286 THR287 GLY288 GLU289 ALA290 LYS291 PHE292 ALA293 TYR294 GLN295 LYS296 THR297 PRO298 HIS299 ASP300 GLU301 TRP302 ASP303 TYR304 ALA305 GLY306 VAL307 ASN308 VAL309 MET310 MET311 LEU312 SER313 GLU314 GLN315 GLU316 ASP317 LYS318 GLN319 GLY320 GLN321 MET322 ARG323 LYS324 LEU325 LEU326 THR327 HIS328 PRO329 ASP330 ARG331 ASN332 GLY333 ILE334 VAL335 TYR336 THR337 LEU338 ASP339 ARG340 THR341 ASN342 GLY343 ASP344 LEU345 ILE346 SER347 ALA348 ASP349 LYS350 MET351 ASP352 ASP353 THR354 VAL355 ASN356 TRP357 VAL358 LYS359 GLU360 VAL361 GLN362 LEU363 ASP364 THR365 GLY366 LEU367 PRO368 VAL369 ARG370 ASP371 PRO372 GLU373 PHE374 GLY375 THR376 ARG377 MET378 ASP379 HIS380 LYS381 ALA382 ARG383 ASP384 ILE385 CYS386 PRO387 SER388 ALA389 MET390 GLY391 TYR392 HIS393 ASN394 GLN395 GLY396 HIS397 ASP398 SER399 TYR400 ASP401 PRO402 GLU403 ARG404 LYS405 VAL406 PHE407 MET408 LEU409 GLY410 ILE411 ASN412 HIS413 ILE414 CYS415 MET416 ASP417 TRP418 GLU419 PRO420 PHE421 MET422 LEU423 PRO424 TYR425 ARG426 ALA427 GLY428 GLN429 PHE430 PHE431 VAL432 GLY433 ALA434 THR435 LEU436 THR437 MET438 TYR439 PRO440 GLY441 PRO442 LYS443 GLY444 ASP445 ARG446 GLY447 ASN448 ALA449 SER450 GLY451 LEU452 GLY453 GLN454 ILE455 LYS456 ALA457 TYR458 ASP459 ALA460 ILE461 SER462 GLY463 GLU464 MET465 LYS466 TRP467 GLU468 LYS469 MET470 GLU471 ARG472 PHE473 SER474 VAL475 TRP476 GLY477 GLY478 THR479 MET480 ALA481 THR482 ALA483 GLY484 GLY485 LEU486 THR487 PHE488 TYR489 ALA490 THR491 LEU492 ASP493 GLY494 PHE495 ILE496 LYS497 ALA498 ARG499 ASP500 SER501 ASP502 THR503 GLY504 ASP505 LEU506 LEU507 TRP508 LYS509 PHE510 LYS511 LEU512 PRO513 SER514 GLY515 VAL516 ILE517 GLY518 HIS519 PRO520 MET521 THR522 TYR523 LYS524 HIS525 ASP526 GLY527 ARG528 GLN529 TYR530 VAL531 ALA532 ILE533 MET534 TYR535 GLY536 VAL537 GLY538 GLY539 TRP540 PRO541 GLY542 VAL543 GLY544 LEU545 VAL546 PHE547 ASP548 LEU549 ALA550 ASP551 PRO552 THR553 ALA554 GLY555 LEU556 GLY557 SER558 VAL559 GLY560 ALA561 PHE562 LYS563 ARG564 LEU565 GLN566 GLU567 PHE568 THR569 GLN570 MET571 GLY572 GLY573 GLY574 VAL575 MET576 VAL577 PHE578 SER579 LEU580 ASP581 GLY582 GLU583 SER584 PRO585 TYR586 SER587 ASP588 PRO589 ASN590 VAL591 GLY592 GLU593 TYR594 ALA595 PRO596 GLY597 GLU598 PRO599 THR600
Unit 2 TYR1 ASP2 GLY3 THR4 ASN5 CYS6 LYS7 ALA8 PRO9 GLY10 ASN11 CYS12 TRP13 GLU14 PRO15 LYS16 PRO17 ASP18 TYR19 PRO20 ALA21 LYS22 VAL23 GLU24 GLY25 SER26 LYS27 TYR28 ASP29 PRO30 GLN31 HIS32 ASP33 PRO34 ALA35 GLU36 LEU37 SER38 LYS39 GLN40 GLY41 GLU42 SER43 LEU44 ALA45 VAL46 MET47 ASP48 ALA49 ARG50 ASN51 GLU52 TRP53 ARG54 VAL55 TRP56 ASN57 MET58 LYS59 LYS60 THR61 GLY62 LYS63 PHE64 GLU65 TYR66 ASP67 VAL68 LYS69 LYS70 ILE71 ASP72 GLY73 TYR74 ASP75 GLU76 THR77 LYS78 ALA79 PRO80 PRO81 ALA82 GLU83
Unit 3 ASN1 ASP2 GLN3 LEU4 VAL5 GLU6 LEU7 ALA8 LYS9 ASP10 PRO11 ALA12 ASN13 TRP14 VAL15 MET16 THR17 GLY18 ARG19 ASP20 TYR21 ASN22 ALA23 GLN24 ASN25 TYR26 SER27 GLU28 MET29 THR30 ASP31 ILE32 ASN33 LYS34 GLU35 ASN36 VAL37 LYS38 GLN39 LEU40 ARG41 PRO42 ALA43 TRP44 SER45 PHE46 SER47 THR48 GLY49 VAL50 LEU51 HIS52 GLY53 HIS54 GLU55 GLY56 THR57 PRO58 LEU59 VAL60 VAL61 GLY62 ASP63 ARG64 MET65 PHE66 ILE67 HIS68 THR69 PRO70 PHE71 PRO72 ASN73 THR74 THR75 PHE76 ALA77 LEU78 ASP79 LEU80 ASN81 GLU82 PRO83 GLY84 LYS85 ILE86 LEU87 TRP88 GLN89 ASN90 LYS91 PRO92 LYS93 GLN94 ASN95 PRO96 THR97 ALA98 ARG99 THR100 VAL101 ALA102 CYS103 CYS104 ASP105 VAL106 VAL107 ASN108 ARG109 GLY110 LEU111 ALA112 TYR113 TRP114 PRO115 GLY116 ASP117 ASP118 GLN119 VAL120 LYS121 PRO122 LEU123 ILE124 PHE125 ARG126 THR127 GLN128 LEU129 ASP130 GLY131 HIS132 ILE133 VAL134 ALA135 MET136 ASP137 ALA138 GLU139 THR140 GLY141 GLU142 THR143 ARG144 TRP145 ILE146 MET147 GLU148 ASN149 SER150 ASP151 ILE152 LYS153 VAL154 GLY155 SER156 THR157 LEU158 THR159 ILE160 ALA161 PRO162 TYR163 VAL164 ILE165 LYS166 ASP167 LEU168 VAL169 LEU170 VAL171 GLY172 SER173 SER174 GLY175 ALA176 GLU177 LEU178 GLY179 VAL180 ARG181 GLY182 TYR183 VAL184 THR185 ALA186 TYR187 ASP188 VAL189 LYS190 SER191 GLY192 GLU193 MET194 ARG195 TRP196 ARG197 ALA198 PHE199 ALA200 THR201 GLY202 PRO203 ASP204 GLU205 GLU206 LEU207 LEU208 LEU209 ALA210 GLU211 ASP212 PHE213 ASN214 ALA215 PRO216 ASN217 PRO218 HIS219 TYR220 GLY221 GLN222 LYS223 ASN224 LEU225 GLY226 LEU227 GLU228 THR229 TRP230 GLU231 GLY232 ASP233 ALA234 TRP235 LYS236 ILE237 GLY238 GLY239 GLY240 THR241 ASN242 TRP243 GLY244 TRP245 TYR246 ALA247 TYR248 ASP249 PRO250 GLU251 VAL252 ASP253 LEU254 PHE255 TYR256 TYR257 GLY258 SER259 GLY260 ASN261 PRO262 ALA263 PRO264 TRP265 ASN266 GLU267 THR268 MET269 ARG270 PRO271 GLY272 ASP273 ASN274 LYS275 TRP276 THR277 MET278 ALA279 ILE280 TRP281 GLY282 ARG283 GLU284 ALA285 THR286 THR287 GLY288 GLU289 ALA290 LYS291 PHE292 ALA293 TYR294 GLN295 LYS296 THR297 PRO298 HIS299 ASP300 GLU301 TRP302 ASP303 TYR304 ALA305 GLY306 VAL307 ASN308 VAL309 MET310 MET311 LEU312 SER313 GLU314 GLN315 GLU316 ASP317 LYS318 GLN319 GLY320 GLN321 MET322 ARG323 LYS324 LEU325 LEU326 THR327 HIS328 PRO329 ASP330 ARG331 ASN332 GLY333 ILE334 VAL335 TYR336 THR337 LEU338 ASP339 ARG340 THR341 ASN342 GLY343 ASP344 LEU345 ILE346 SER347 ALA348 ASP349 LYS350 MET351 ASP352 ASP353 THR354 VAL355 ASN356 TRP357 VAL358 LYS359 GLU360 VAL361 GLN362 LEU363 ASP364 THR365 GLY366 LEU367 PRO368 VAL369 ARG370 ASP371 PRO372 GLU373 PHE374 GLY375 THR376 ARG377 MET378 ASP379 HIS380 LYS381 ALA382 ARG383 ASP384 ILE385 CYS386 PRO387 SER388 ALA389 MET390 GLY391 TYR392 HIS393 ASN394 GLN395 GLY396 HIS397 ASP398 SER399 TYR400 ASP401 PRO402 GLU403 ARG404 LYS405 VAL406 PHE407 MET408 LEU409 GLY410 ILE411 ASN412 HIS413 ILE414 CYS415 MET416 ASP417 TRP418 GLU419 PRO420 PHE421 MET422 LEU423 PRO424 TYR425 ARG426 ALA427 GLY428 GLN429 PHE430 PHE431 VAL432 GLY433 ALA434 THR435 LEU436 THR437 MET438 TYR439 PRO440 GLY441 PRO442 LYS443 GLY444 ASP445 ARG446 GLY447 ASN448 ALA449 SER450 GLY451 LEU452 GLY453 GLN454 ILE455 LYS456 ALA457 TYR458 ASP459 ALA460 ILE461 SER462 GLY463 GLU464 MET465 LYS466 TRP467 GLU468 LYS469 MET470 GLU471 ARG472 PHE473 SER474 VAL475 TRP476 GLY477 GLY478 THR479 MET480 ALA481 THR482 ALA483 GLY484 GLY485 LEU486 THR487 PHE488 TYR489 ALA490 THR491 LEU492 ASP493 GLY494 PHE495 ILE496 LYS497 ALA498 ARG499 ASP500 SER501 ASP502 THR503 GLY504 ASP505 LEU506 LEU507 TRP508 LYS509 PHE510 LYS511 LEU512 PRO513 SER514 GLY515 VAL516 ILE517 GLY518 HIS519 PRO520 MET521 THR522 TYR523 LYS524 HIS525 ASP526 GLY527 ARG528 GLN529 TYR530 VAL531 ALA532 ILE533 MET534 TYR535 GLY536 VAL537 GLY538 GLY539 TRP540 PRO541 GLY542 VAL543 GLY544 LEU545 VAL546 PHE547 ASP548 LEU549 ALA550 ASP551 PRO552 THR553 ALA554 GLY555 LEU556 GLY557 SER558 VAL559 GLY560 ALA561 PHE562 LYS563 ARG564 LEU565 GLN566 GLU567 PHE568 THR569 GLN570 MET571 GLY572 GLY573 GLY574 VAL575 MET576 VAL577 PHE578 SER579 LEU580 ASP581 GLY582 GLU583 SER584 PRO585 TYR586 SER587 ASP588 PRO589 ASN590 VAL591 GLY592 GLU593 TYR594 ALA595 PRO596 GLY597 GLU598 PRO599 THR600
Unit 4 TYR1 ASP2 GLY3 THR4 ASN5 CYS6 LYS7 ALA8 PRO9 GLY10 ASN11 CYS12 TRP13 GLU14 PRO15 LYS16 PRO17 ASP18 TYR19 PRO20 ALA21 LYS22 VAL23 GLU24 GLY25 SER26 LYS27 TYR28 ASP29 PRO30 GLN31 HIS32 ASP33 PRO34 ALA35 GLU36 LEU37 SER38 LYS39 GLN40 GLY41 GLU42 SER43 LEU44 ALA45 VAL46 MET47 ASP48 ALA49 ARG50 ASN51 GLU52 TRP53 ARG54 VAL55 TRP56 ASN57 MET58 LYS59 LYS60 THR61 GLY62 LYS63 PHE64 GLU65 TYR66 ASP67 VAL68 LYS69 LYS70 ILE71 ASP72 GLY73 TYR74 ASP75 GLU76 THR77 LYS78 ALA79 PRO80 PRO81 ALA82 GLU83
Ligands
Unit 5 PQQ701 CA702
Unit 6 PQQ701 CA702
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany