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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE DETERMINATION AND REFINEMENT OF BACILLUS STEAROTHERMOPHILUS LACTATE DEHYDROGENASE
Keywords OXIDOREDUCTASE(CHOH(D)-NAD(A))
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1LDB     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   APO-L-LACTATE DEHYDROGENASE  A 294 2277 0
2  Protein   APO-L-LACTATE DEHYDROGENASE  B 294 2277 0
3  Protein   APO-L-LACTATE DEHYDROGENASE  C 294 2277 0
4  Protein   APO-L-LACTATE DEHYDROGENASE  D 294 2277 0
5  Ligand   APO-L-LACTATE DEHYDROGENASE  A 2 0 10
6 Water     1 0 1
total       1179 9108 11

Proteins
Unit 1 MET15 LYS16 ASN17 ASN18 GLY19 GLY20 ALA21 ARG22 VAL23 VAL24 VAL25 ILE26 GLY27 ALA28 GLY29 PHE30 VAL31 GLY32 ALA33 SER34 TYR35 VAL36 PHE37 ALA38 LEU39 MET40 ASN41 GLN42 GLY43 ILE44 ALA45 ASP46 GLU47 ILE48 VAL49 LEU50 ILE51 ASP52 ALA53 ASN54 GLU55 SER56 LYS57 ALA58 ILE59 GLY60 ASP61 ALA62 MET63 ASP64 PHE65 ASN66 HIS67 GLY68 LYS69 VAL70 PHE71 ALA72 PRO73 LYS74 PRO75 VAL76 ASP77 ILE78 TRP79 ASP82 TYR83 ASP84 ASP85 CYS86 ARG87 ASP88 ALA89 ASP90 LEU91 VAL92 VAL93 ILE94 CYS95 ALA96 GLY97 ALA98 ASN99 ASP108 LEU109 VAL110 ASP111 LYS112 ASN113 ILE114 ALA115 ILE116 PHE117 ARG118 SER119 ILE120 VAL121 GLU122 SER123 VAL124 MET125 ALA126 SER127 GLY128 PHE129 GLN130 GLY131 LEU132 PHE133 LEU134 VAL135 ALA136 THR137 ASN138 PRO139 VAL140 ASP141 ILE142 LEU143 THR144 TYR145 ALA146 THR147 TRP148 LYS149 PHE150 SER151 GLY152 LEU153 PRO154 HIS155 GLU156 ARG157 VAL158 ILE159 GLY160 SER161 GLY162 THR163 ILE164 LEU165 ASP166 THR167 ALA168 ARG169 PHE170 ARG171 PHE172 LEU173 LEU174 GLY175 GLU176 TYR177 PHE178 SER179 VAL180 ALA181 PRO182 GLN183 ASN184 VAL185 HIS186 ALA187 TYR188 ILE189 ILE190 GLY191 GLU192 HIS193 GLY194 ASP195 THR196 GLU197 LEU198 PRO199 VAL200 TRP201 SER202 GLN203 ALA204 TYR205 ILE206 GLY207 VAL208 MET209 PRO210 ILE211 ASP225 LEU226 GLU227 ARG228 ILE229 PHE230 VAL231 ASN232 VAL233 ARG234 ASP235 ALA236 ALA237 TYR238 GLN239 ILE240 ILE241 GLU242 LYS243 LYS244 GLY245 ALA246 THR247 TYR248 TYR249 GLY250 ILE251 ALA252 MET253 GLY254 LEU255 ALA256 ARG257 VAL258 THR259 ARG260 ALA261 ILE262 LEU263 HIS264 ASN265 GLU266 ASN267 ALA268 ILE269 LEU270 THR271 VAL272 SER273 ALA274 TYR275 LEU276 ASP277 GLY278 LEU279 TYR280 GLY281 GLU282 ARG283 ASP284 VAL285 TYR286 ILE287 GLY288 VAL289 PRO290 ALA291 VAL292 ILE293 ASN294 ARG295 ASN296 GLY297 ILE298 ARG299 GLU300 VAL301 ILE302 GLU303 ILE304 GLU305 LEU306 ASN307 ASP308 ASP309 GLU310 LYS311 ASN312 ARG313 PHE314 HIS315 HIS316 SER317 ALA318 ALA319 THR320 LEU321 LYS322 SER323 VAL324 LEU325 ALA326 ARG327 ALA328 PHE329 THR330 ARG331
Unit 2 MET15 LYS16 ASN17 ASN18 GLY19 GLY20 ALA21 ARG22 VAL23 VAL24 VAL25 ILE26 GLY27 ALA28 GLY29 PHE30 VAL31 GLY32 ALA33 SER34 TYR35 VAL36 PHE37 ALA38 LEU39 MET40 ASN41 GLN42 GLY43 ILE44 ALA45 ASP46 GLU47 ILE48 VAL49 LEU50 ILE51 ASP52 ALA53 ASN54 GLU55 SER56 LYS57 ALA58 ILE59 GLY60 ASP61 ALA62 MET63 ASP64 PHE65 ASN66 HIS67 GLY68 LYS69 VAL70 PHE71 ALA72 PRO73 LYS74 PRO75 VAL76 ASP77 ILE78 TRP79 ASP82 TYR83 ASP84 ASP85 CYS86 ARG87 ASP88 ALA89 ASP90 LEU91 VAL92 VAL93 ILE94 CYS95 ALA96 GLY97 ALA98 ASN99 ASP108 LEU109 VAL110 ASP111 LYS112 ASN113 ILE114 ALA115 ILE116 PHE117 ARG118 SER119 ILE120 VAL121 GLU122 SER123 VAL124 MET125 ALA126 SER127 GLY128 PHE129 GLN130 GLY131 LEU132 PHE133 LEU134 VAL135 ALA136 THR137 ASN138 PRO139 VAL140 ASP141 ILE142 LEU143 THR144 TYR145 ALA146 THR147 TRP148 LYS149 PHE150 SER151 GLY152 LEU153 PRO154 HIS155 GLU156 ARG157 VAL158 ILE159 GLY160 SER161 GLY162 THR163 ILE164 LEU165 ASP166 THR167 ALA168 ARG169 PHE170 ARG171 PHE172 LEU173 LEU174 GLY175 GLU176 TYR177 PHE178 SER179 VAL180 ALA181 PRO182 GLN183 ASN184 VAL185 HIS186 ALA187 TYR188 ILE189 ILE190 GLY191 GLU192 HIS193 GLY194 ASP195 THR196 GLU197 LEU198 PRO199 VAL200 TRP201 SER202 GLN203 ALA204 TYR205 ILE206 GLY207 VAL208 MET209 PRO210 ILE211 ASP225 LEU226 GLU227 ARG228 ILE229 PHE230 VAL231 ASN232 VAL233 ARG234 ASP235 ALA236 ALA237 TYR238 GLN239 ILE240 ILE241 GLU242 LYS243 LYS244 GLY245 ALA246 THR247 TYR248 TYR249 GLY250 ILE251 ALA252 MET253 GLY254 LEU255 ALA256 ARG257 VAL258 THR259 ARG260 ALA261 ILE262 LEU263 HIS264 ASN265 GLU266 ASN267 ALA268 ILE269 LEU270 THR271 VAL272 SER273 ALA274 TYR275 LEU276 ASP277 GLY278 LEU279 TYR280 GLY281 GLU282 ARG283 ASP284 VAL285 TYR286 ILE287 GLY288 VAL289 PRO290 ALA291 VAL292 ILE293 ASN294 ARG295 ASN296 GLY297 ILE298 ARG299 GLU300 VAL301 ILE302 GLU303 ILE304 GLU305 LEU306 ASN307 ASP308 ASP309 GLU310 LYS311 ASN312 ARG313 PHE314 HIS315 HIS316 SER317 ALA318 ALA319 THR320 LEU321 LYS322 SER323 VAL324 LEU325 ALA326 ARG327 ALA328 PHE329 THR330 ARG331
Unit 3 MET15 LYS16 ASN17 ASN18 GLY19 GLY20 ALA21 ARG22 VAL23 VAL24 VAL25 ILE26 GLY27 ALA28 GLY29 PHE30 VAL31 GLY32 ALA33 SER34 TYR35 VAL36 PHE37 ALA38 LEU39 MET40 ASN41 GLN42 GLY43 ILE44 ALA45 ASP46 GLU47 ILE48 VAL49 LEU50 ILE51 ASP52 ALA53 ASN54 GLU55 SER56 LYS57 ALA58 ILE59 GLY60 ASP61 ALA62 MET63 ASP64 PHE65 ASN66 HIS67 GLY68 LYS69 VAL70 PHE71 ALA72 PRO73 LYS74 PRO75 VAL76 ASP77 ILE78 TRP79 ASP82 TYR83 ASP84 ASP85 CYS86 ARG87 ASP88 ALA89 ASP90 LEU91 VAL92 VAL93 ILE94 CYS95 ALA96 GLY97 ALA98 ASN99 ASP108 LEU109 VAL110 ASP111 LYS112 ASN113 ILE114 ALA115 ILE116 PHE117 ARG118 SER119 ILE120 VAL121 GLU122 SER123 VAL124 MET125 ALA126 SER127 GLY128 PHE129 GLN130 GLY131 LEU132 PHE133 LEU134 VAL135 ALA136 THR137 ASN138 PRO139 VAL140 ASP141 ILE142 LEU143 THR144 TYR145 ALA146 THR147 TRP148 LYS149 PHE150 SER151 GLY152 LEU153 PRO154 HIS155 GLU156 ARG157 VAL158 ILE159 GLY160 SER161 GLY162 THR163 ILE164 LEU165 ASP166 THR167 ALA168 ARG169 PHE170 ARG171 PHE172 LEU173 LEU174 GLY175 GLU176 TYR177 PHE178 SER179 VAL180 ALA181 PRO182 GLN183 ASN184 VAL185 HIS186 ALA187 TYR188 ILE189 ILE190 GLY191 GLU192 HIS193 GLY194 ASP195 THR196 GLU197 LEU198 PRO199 VAL200 TRP201 SER202 GLN203 ALA204 TYR205 ILE206 GLY207 VAL208 MET209 PRO210 ILE211 ASP225 LEU226 GLU227 ARG228 ILE229 PHE230 VAL231 ASN232 VAL233 ARG234 ASP235 ALA236 ALA237 TYR238 GLN239 ILE240 ILE241 GLU242 LYS243 LYS244 GLY245 ALA246 THR247 TYR248 TYR249 GLY250 ILE251 ALA252 MET253 GLY254 LEU255 ALA256 ARG257 VAL258 THR259 ARG260 ALA261 ILE262 LEU263 HIS264 ASN265 GLU266 ASN267 ALA268 ILE269 LEU270 THR271 VAL272 SER273 ALA274 TYR275 LEU276 ASP277 GLY278 LEU279 TYR280 GLY281 GLU282 ARG283 ASP284 VAL285 TYR286 ILE287 GLY288 VAL289 PRO290 ALA291 VAL292 ILE293 ASN294 ARG295 ASN296 GLY297 ILE298 ARG299 GLU300 VAL301 ILE302 GLU303 ILE304 GLU305 LEU306 ASN307 ASP308 ASP309 GLU310 LYS311 ASN312 ARG313 PHE314 HIS315 HIS316 SER317 ALA318 ALA319 THR320 LEU321 LYS322 SER323 VAL324 LEU325 ALA326 ARG327 ALA328 PHE329 THR330 ARG331
Unit 4 MET15 LYS16 ASN17 ASN18 GLY19 GLY20 ALA21 ARG22 VAL23 VAL24 VAL25 ILE26 GLY27 ALA28 GLY29 PHE30 VAL31 GLY32 ALA33 SER34 TYR35 VAL36 PHE37 ALA38 LEU39 MET40 ASN41 GLN42 GLY43 ILE44 ALA45 ASP46 GLU47 ILE48 VAL49 LEU50 ILE51 ASP52 ALA53 ASN54 GLU55 SER56 LYS57 ALA58 ILE59 GLY60 ASP61 ALA62 MET63 ASP64 PHE65 ASN66 HIS67 GLY68 LYS69 VAL70 PHE71 ALA72 PRO73 LYS74 PRO75 VAL76 ASP77 ILE78 TRP79 ASP82 TYR83 ASP84 ASP85 CYS86 ARG87 ASP88 ALA89 ASP90 LEU91 VAL92 VAL93 ILE94 CYS95 ALA96 GLY97 ALA98 ASN99 ASP108 LEU109 VAL110 ASP111 LYS112 ASN113 ILE114 ALA115 ILE116 PHE117 ARG118 SER119 ILE120 VAL121 GLU122 SER123 VAL124 MET125 ALA126 SER127 GLY128 PHE129 GLN130 GLY131 LEU132 PHE133 LEU134 VAL135 ALA136 THR137 ASN138 PRO139 VAL140 ASP141 ILE142 LEU143 THR144 TYR145 ALA146 THR147 TRP148 LYS149 PHE150 SER151 GLY152 LEU153 PRO154 HIS155 GLU156 ARG157 VAL158 ILE159 GLY160 SER161 GLY162 THR163 ILE164 LEU165 ASP166 THR167 ALA168 ARG169 PHE170 ARG171 PHE172 LEU173 LEU174 GLY175 GLU176 TYR177 PHE178 SER179 VAL180 ALA181 PRO182 GLN183 ASN184 VAL185 HIS186 ALA187 TYR188 ILE189 ILE190 GLY191 GLU192 HIS193 GLY194 ASP195 THR196 GLU197 LEU198 PRO199 VAL200 TRP201 SER202 GLN203 ALA204 TYR205 ILE206 GLY207 VAL208 MET209 PRO210 ILE211 ASP225 LEU226 GLU227 ARG228 ILE229 PHE230 VAL231 ASN232 VAL233 ARG234 ASP235 ALA236 ALA237 TYR238 GLN239 ILE240 ILE241 GLU242 LYS243 LYS244 GLY245 ALA246 THR247 TYR248 TYR249 GLY250 ILE251 ALA252 MET253 GLY254 LEU255 ALA256 ARG257 VAL258 THR259 ARG260 ALA261 ILE262 LEU263 HIS264 ASN265 GLU266 ASN267 ALA268 ILE269 LEU270 THR271 VAL272 SER273 ALA274 TYR275 LEU276 ASP277 GLY278 LEU279 TYR280 GLY281 GLU282 ARG283 ASP284 VAL285 TYR286 ILE287 GLY288 VAL289 PRO290 ALA291 VAL292 ILE293 ASN294 ARG295 ASN296 GLY297 ILE298 ARG299 GLU300 VAL301 ILE302 GLU303 ILE304 GLU305 LEU306 ASN307 ASP308 ASP309 GLU310 LYS311 ASN312 ARG313 PHE314 HIS315 HIS316 SER317 ALA318 ALA319 THR320 LEU321 LYS322 SER323 VAL324 LEU325 ALA326 ARG327 ALA328 PHE329 THR330 ARG331

Ligands
Unit 5 SO41 SO42

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany