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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF E. COLI ACONITASE B.
Keywords MOLECULAR RECOGNITION, RNA BINDING, CITRIC ACID CYCLE, HEAT- LIKE DOMAIN, LYASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1L5J     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ACONITATE HYDRATASE 2  A 862 6552 0
2  Protein   ACONITATE HYDRATASE 2  B 862 6552 0
3  Ligand   ACONITATE HYDRATASE 2  A 2 0 19
4  Ligand   ACONITATE HYDRATASE 2  B 2 0 19
5 Water     570 0 570
total       2298 13104 608

Proteins
Unit 1 MET1 LEU2 GLU3 GLU4 TYR5 ARG6 LYS7 HIS8 VAL9 ALA10 GLU11 ARG12 ALA13 ALA14 GLU15 GLY16 ILE17 ALA18 PRO19 LYS20 PRO21 LEU22 ASP23 ALA24 ASN25 GLN26 MET27 ALA28 ALA29 LEU30 VAL31 GLU32 LEU33 LEU34 LYS35 ASN36 PRO37 PRO38 ALA39 GLY40 GLU41 GLU42 GLU43 PHE44 LEU45 LEU46 ASP47 LEU48 LEU49 THR50 ASN51 ARG52 VAL53 PRO54 PRO55 GLY56 VAL57 ASP58 GLU59 ALA60 ALA61 TYR62 VAL63 LYS64 ALA65 GLY66 PHE67 LEU68 ALA69 ALA70 ILE71 ALA72 LYS73 GLY74 GLU75 ALA76 LYS77 SER78 PRO79 LEU80 LEU81 THR82 PRO83 GLU84 LYS85 ALA86 ILE87 GLU88 LEU89 LEU90 GLY91 THR92 MET93 GLN94 GLY95 GLY96 TYR97 ASN98 ILE99 HIS100 PRO101 LEU102 ILE103 ASP104 ALA105 LEU106 ASP107 ASP108 ALA109 LYS110 LEU111 ALA112 PRO113 ILE114 ALA115 ALA116 LYS117 ALA118 LEU119 SER120 HIS121 THR122 LEU123 LEU124 MET125 PHE126 ASP127 ASN128 PHE129 TYR130 ASP131 VAL132 GLU133 GLU134 LYS135 ALA136 LYS137 ALA138 GLY139 ASN140 GLU141 TYR142 ALA143 LYS144 GLN145 VAL146 MET147 GLN148 SER149 TRP150 ALA151 ASP152 ALA153 GLU154 TRP155 PHE156 LEU157 ASN158 ARG159 PRO160 ALA161 LEU162 ALA163 GLU164 LYS165 LEU166 THR167 VAL168 THR169 VAL170 PHE171 LYS172 VAL173 THR174 GLY175 GLU176 THR177 ASN178 THR179 ASP180 ASP181 LEU182 SER183 PRO184 ALA185 PRO186 ASP187 ALA188 TRP189 SER190 ARG191 PRO192 ASP193 ILE194 PRO195 LEU196 HIS197 ALA198 LEU199 ALA200 MET201 LEU202 LYS203 ASN204 ALA205 ARG206 GLU207 GLY208 ILE209 GLU210 PRO211 ASP212 GLN213 PRO214 GLY215 VAL216 VAL217 GLY218 PRO219 ILE220 LYS221 GLN222 ILE223 GLU224 ALA225 LEU226 GLN227 GLN228 LYS229 GLY230 PHE231 PRO232 LEU233 ALA234 TYR235 VAL236 GLY237 ASP238 VAL239 VAL240 GLY241 THR242 GLY243 SER244 SER245 ARG246 LYS247 SER248 ALA249 THR250 ASN251 SER252 VAL253 LEU254 TRP255 PHE256 MET257 GLY258 ASP259 ASP260 ILE261 PRO262 HIS263 VAL264 PRO265 ASN266 LYS267 ARG268 GLY269 GLY270 GLY271 LEU272 CYS273 LEU274 GLY275 GLY276 LYS277 ILE278 ALA279 PRO280 ILE281 PHE282 PHE283 ASN284 THR285 MET286 GLU287 ASP288 ALA289 GLY290 ALA291 LEU292 PRO293 ILE294 GLU295 VAL296 ASP297 VAL298 SER299 ASN300 LEU301 ASN302 MET303 GLY304 ASP305 VAL306 ILE307 ASP308 VAL309 TYR310 PRO311 TYR312 LYS313 GLY314 GLU315 VAL316 ARG317 ASN318 HIS319 GLU320 THR321 GLY322 GLU323 LEU324 LEU325 ALA326 THR327 PHE328 GLU329 LEU330 LYS331 THR332 ASP333 VAL334 LEU335 ILE336 ASP337 GLU338 VAL339 ARG340 ALA341 GLY342 GLY343 ARG344 ILE345 PRO346 LEU347 ILE348 ILE349 GLY350 ARG351 GLY352 LEU353 THR354 THR355 LYS356 ALA357 ARG358 GLU359 ALA360 LEU361 GLY362 LEU363 PRO364 HIS365 SER366 ASP367 VAL368 PHE369 ARG370 GLN371 ALA372 LYS373 ASP374 VAL375 ALA376 GLU377 SER378 ASP379 ARG380 GLY381 PHE382 SER383 LEU384 ALA385 GLN386 LYS387 MET388 VAL389 GLY390 ARG391 ALA392 CYS393 GLY394 VAL395 LYS396 GLY397 ILE398 ARG399 PRO400 GLY401 ALA402 TYR403 CYS404 GLU405 PRO406 LYS407 MET408 THR409 SER410 VAL411 GLY412 SER413 GLN414 ASP415 THR416 THR417 GLY418 PRO419 MET420 THR421 ARG422 ASP423 GLU424 LEU425 LYS426 ASP427 LEU428 ALA429 CYS430 LEU431 GLY432 PHE433 SER434 ALA435 ASP436 LEU437 VAL438 MET439 GLN440 SER441 PHE442 CYS443 HIS444 THR445 ALA446 ALA447 TYR448 PRO449 LYS450 PRO451 VAL452 ASP453 VAL454 ASN455 THR456 HIS457 HIS458 THR459 LEU460 PRO461 ASP462 PHE463 ILE464 MET465 ASN466 ARG467 GLY468 GLY469 VAL470 SER471 LEU472 ARG473 PRO474 GLY475 ASP476 GLY477 VAL478 ILE479 HIS480 SER481 TRP482 LEU483 ASN484 ARG485 MET486 LEU487 LEU488 PRO489 ASP490 THR491 VAL492 GLY493 THR494 GLY495 GLY496 ASP497 SER498 HIS499 THR500 ARG501 PHE502 PRO503 ILE504 GLY505 ILE506 SER507 PHE508 PRO509 ALA510 GLY511 SER512 GLY513 LEU514 VAL515 ALA516 PHE517 ALA518 ALA519 ALA520 THR521 GLY522 VAL523 MET524 PRO525 LEU526 ASP527 MET528 PRO529 GLU530 SER531 VAL532 LEU533 VAL534 ARG535 PHE536 LYS537 GLY538 LYS539 MET540 GLN541 PRO542 GLY543 ILE544 THR545 LEU546 ARG547 ASP548 LEU549 VAL550 HIS551 ALA552 ILE553 PRO554 LEU555 TYR556 ALA557 ILE558 LYS559 GLN560 GLY561 LEU562 LEU563 THR564 VAL565 GLU566 LYS567 LYS568 GLY569 LYS570 LYS571 ASN572 ILE573 PHE574 SER575 GLY576 ARG577 ILE578 LEU579 GLU580 ILE581 GLU582 GLY583 LEU584 PRO585 ASP586 LEU587 LYS588 VAL589 GLU590 GLN591 ALA592 PHE593 GLU594 LEU595 THR596 ASP597 ALA598 SER599 ALA600 GLU601 ARG602 SER603 ALA604 ALA605 GLY606 CYS607 THR608 ILE609 LYS610 LEU611 ASN612 LYS613 GLU614 PRO615 ILE616 ILE617 GLU618 TYR619 LEU620 ASN621 SER622 ASN623 ILE624 VAL625 LEU626 LEU627 LYS628 TRP629 MET630 ILE631 ALA632 GLU633 GLY634 TYR635 GLY636 ASP637 ARG638 ARG639 THR640 LEU641 GLU642 ARG643 ARG644 ILE645 GLN646 GLY647 MET648 GLU649 LYS650 TRP651 LEU652 ALA653 ASN654 PRO655 GLU656 LEU657 LEU658 GLU659 ALA660 ASP661 ALA662 ASP663 ALA664 GLU665 TYR666 ALA667 ALA668 VAL669 ILE670 ASP671 ILE672 ASP673 LEU674 ALA675 ASP676 ILE677 LYS678 GLU679 PRO680 ILE681 LEU682 CYS683 ALA684 PRO685 ASN686 ASP687 PRO688 ASP689 ASP690 ALA691 ARG692 PRO693 LEU694 SER695 ALA696 VAL697 GLN698 GLY699 GLU700 LYS701 ILE702 ASP703 GLU704 VAL705 PHE706 ILE707 GLY708 SER709 CYS710 MET711 THR712 ASN713 ILE714 GLY715 HIS716 PHE717 ARG718 ALA719 ALA720 GLY721 LYS722 LEU723 LEU724 ASP725 ALA726 HIS727 LYS728 GLY729 GLN730 LEU731 PRO732 THR733 ARG734 LEU735 TRP736 VAL737 ALA738 PRO739 PRO740 THR741 ARG742 MET743 ASP744 ALA745 ALA746 GLN747 LEU748 THR749 GLU750 GLU751 GLY752 TYR753 TYR754 SER755 VAL756 PHE757 GLY758 LYS759 SER760 GLY761 ALA762 ARG763 ILE764 GLU765 ILE766 PRO767 GLY768 CYS769 SER770 LEU771 CYS772 MET773 GLY774 ASN775 GLN776 ALA777 ARG778 VAL779 ALA780 ASP781 GLY782 ALA783 THR784 VAL785 VAL786 SER787 THR788 SER789 THR790 ARG791 ASN792 PHE793 PRO794 ASN795 ARG796 LEU797 GLY798 THR799 GLY800 ALA801 ASN802 VAL803 PHE804 LEU805 ALA806 SER807 ALA808 GLU809 LEU810 ALA811 ALA812 VAL813 ALA814 ALA815 LEU816 ILE817 GLY818 LYS819 LEU820 PRO821 THR822 PRO823 GLU824 GLU825 TYR826 GLN827 THR828 TYR829 VAL830 ALA831 GLN832 VAL833 ASP834 LYS835 THR836 ALA837 VAL838 ASP839 THR840 TYR841 ARG842 TYR843 LEU844 ASN845 PHE846 ASN847 GLN848 LEU849 SER850 GLN851 TYR852 THR853 GLU854 LYS855 ALA856 ASP857 GLY858 VAL859 ILE860 PHE861 GLN862
Unit 2 MET1 LEU2 GLU3 GLU4 TYR5 ARG6 LYS7 HIS8 VAL9 ALA10 GLU11 ARG12 ALA13 ALA14 GLU15 GLY16 ILE17 ALA18 PRO19 LYS20 PRO21 LEU22 ASP23 ALA24 ASN25 GLN26 MET27 ALA28 ALA29 LEU30 VAL31 GLU32 LEU33 LEU34 LYS35 ASN36 PRO37 PRO38 ALA39 GLY40 GLU41 GLU42 GLU43 PHE44 LEU45 LEU46 ASP47 LEU48 LEU49 THR50 ASN51 ARG52 VAL53 PRO54 PRO55 GLY56 VAL57 ASP58 GLU59 ALA60 ALA61 TYR62 VAL63 LYS64 ALA65 GLY66 PHE67 LEU68 ALA69 ALA70 ILE71 ALA72 LYS73 GLY74 GLU75 ALA76 LYS77 SER78 PRO79 LEU80 LEU81 THR82 PRO83 GLU84 LYS85 ALA86 ILE87 GLU88 LEU89 LEU90 GLY91 THR92 MET93 GLN94 GLY95 GLY96 TYR97 ASN98 ILE99 HIS100 PRO101 LEU102 ILE103 ASP104 ALA105 LEU106 ASP107 ASP108 ALA109 LYS110 LEU111 ALA112 PRO113 ILE114 ALA115 ALA116 LYS117 ALA118 LEU119 SER120 HIS121 THR122 LEU123 LEU124 MET125 PHE126 ASP127 ASN128 PHE129 TYR130 ASP131 VAL132 GLU133 GLU134 LYS135 ALA136 LYS137 ALA138 GLY139 ASN140 GLU141 TYR142 ALA143 LYS144 GLN145 VAL146 MET147 GLN148 SER149 TRP150 ALA151 ASP152 ALA153 GLU154 TRP155 PHE156 LEU157 ASN158 ARG159 PRO160 ALA161 LEU162 ALA163 GLU164 LYS165 LEU166 THR167 VAL168 THR169 VAL170 PHE171 LYS172 VAL173 THR174 GLY175 GLU176 THR177 ASN178 THR179 ASP180 ASP181 LEU182 SER183 PRO184 ALA185 PRO186 ASP187 ALA188 TRP189 SER190 ARG191 PRO192 ASP193 ILE194 PRO195 LEU196 HIS197 ALA198 LEU199 ALA200 MET201 LEU202 LYS203 ASN204 ALA205 ARG206 GLU207 GLY208 ILE209 GLU210 PRO211 ASP212 GLN213 PRO214 GLY215 VAL216 VAL217 GLY218 PRO219 ILE220 LYS221 GLN222 ILE223 GLU224 ALA225 LEU226 GLN227 GLN228 LYS229 GLY230 PHE231 PRO232 LEU233 ALA234 TYR235 VAL236 GLY237 ASP238 VAL239 VAL240 GLY241 THR242 GLY243 SER244 SER245 ARG246 LYS247 SER248 ALA249 THR250 ASN251 SER252 VAL253 LEU254 TRP255 PHE256 MET257 GLY258 ASP259 ASP260 ILE261 PRO262 HIS263 VAL264 PRO265 ASN266 LYS267 ARG268 GLY269 GLY270 GLY271 LEU272 CYS273 LEU274 GLY275 GLY276 LYS277 ILE278 ALA279 PRO280 ILE281 PHE282 PHE283 ASN284 THR285 MET286 GLU287 ASP288 ALA289 GLY290 ALA291 LEU292 PRO293 ILE294 GLU295 VAL296 ASP297 VAL298 SER299 ASN300 LEU301 ASN302 MET303 GLY304 ASP305 VAL306 ILE307 ASP308 VAL309 TYR310 PRO311 TYR312 LYS313 GLY314 GLU315 VAL316 ARG317 ASN318 HIS319 GLU320 THR321 GLY322 GLU323 LEU324 LEU325 ALA326 THR327 PHE328 GLU329 LEU330 LYS331 THR332 ASP333 VAL334 LEU335 ILE336 ASP337 GLU338 VAL339 ARG340 ALA341 GLY342 GLY343 ARG344 ILE345 PRO346 LEU347 ILE348 ILE349 GLY350 ARG351 GLY352 LEU353 THR354 THR355 LYS356 ALA357 ARG358 GLU359 ALA360 LEU361 GLY362 LEU363 PRO364 HIS365 SER366 ASP367 VAL368 PHE369 ARG370 GLN371 ALA372 LYS373 ASP374 VAL375 ALA376 GLU377 SER378 ASP379 ARG380 GLY381 PHE382 SER383 LEU384 ALA385 GLN386 LYS387 MET388 VAL389 GLY390 ARG391 ALA392 CYS393 GLY394 VAL395 LYS396 GLY397 ILE398 ARG399 PRO400 GLY401 ALA402 TYR403 CYS404 GLU405 PRO406 LYS407 MET408 THR409 SER410 VAL411 GLY412 SER413 GLN414 ASP415 THR416 THR417 GLY418 PRO419 MET420 THR421 ARG422 ASP423 GLU424 LEU425 LYS426 ASP427 LEU428 ALA429 CYS430 LEU431 GLY432 PHE433 SER434 ALA435 ASP436 LEU437 VAL438 MET439 GLN440 SER441 PHE442 CYS443 HIS444 THR445 ALA446 ALA447 TYR448 PRO449 LYS450 PRO451 VAL452 ASP453 VAL454 ASN455 THR456 HIS457 HIS458 THR459 LEU460 PRO461 ASP462 PHE463 ILE464 MET465 ASN466 ARG467 GLY468 GLY469 VAL470 SER471 LEU472 ARG473 PRO474 GLY475 ASP476 GLY477 VAL478 ILE479 HIS480 SER481 TRP482 LEU483 ASN484 ARG485 MET486 LEU487 LEU488 PRO489 ASP490 THR491 VAL492 GLY493 THR494 GLY495 GLY496 ASP497 SER498 HIS499 THR500 ARG501 PHE502 PRO503 ILE504 GLY505 ILE506 SER507 PHE508 PRO509 ALA510 GLY511 SER512 GLY513 LEU514 VAL515 ALA516 PHE517 ALA518 ALA519 ALA520 THR521 GLY522 VAL523 MET524 PRO525 LEU526 ASP527 MET528 PRO529 GLU530 SER531 VAL532 LEU533 VAL534 ARG535 PHE536 LYS537 GLY538 LYS539 MET540 GLN541 PRO542 GLY543 ILE544 THR545 LEU546 ARG547 ASP548 LEU549 VAL550 HIS551 ALA552 ILE553 PRO554 LEU555 TYR556 ALA557 ILE558 LYS559 GLN560 GLY561 LEU562 LEU563 THR564 VAL565 GLU566 LYS567 LYS568 GLY569 LYS570 LYS571 ASN572 ILE573 PHE574 SER575 GLY576 ARG577 ILE578 LEU579 GLU580 ILE581 GLU582 GLY583 LEU584 PRO585 ASP586 LEU587 LYS588 VAL589 GLU590 GLN591 ALA592 PHE593 GLU594 LEU595 THR596 ASP597 ALA598 SER599 ALA600 GLU601 ARG602 SER603 ALA604 ALA605 GLY606 CYS607 THR608 ILE609 LYS610 LEU611 ASN612 LYS613 GLU614 PRO615 ILE616 ILE617 GLU618 TYR619 LEU620 ASN621 SER622 ASN623 ILE624 VAL625 LEU626 LEU627 LYS628 TRP629 MET630 ILE631 ALA632 GLU633 GLY634 TYR635 GLY636 ASP637 ARG638 ARG639 THR640 LEU641 GLU642 ARG643 ARG644 ILE645 GLN646 GLY647 MET648 GLU649 LYS650 TRP651 LEU652 ALA653 ASN654 PRO655 GLU656 LEU657 LEU658 GLU659 ALA660 ASP661 ALA662 ASP663 ALA664 GLU665 TYR666 ALA667 ALA668 VAL669 ILE670 ASP671 ILE672 ASP673 LEU674 ALA675 ASP676 ILE677 LYS678 GLU679 PRO680 ILE681 LEU682 CYS683 ALA684 PRO685 ASN686 ASP687 PRO688 ASP689 ASP690 ALA691 ARG692 PRO693 LEU694 SER695 ALA696 VAL697 GLN698 GLY699 GLU700 LYS701 ILE702 ASP703 GLU704 VAL705 PHE706 ILE707 GLY708 SER709 CYS710 MET711 THR712 ASN713 ILE714 GLY715 HIS716 PHE717 ARG718 ALA719 ALA720 GLY721 LYS722 LEU723 LEU724 ASP725 ALA726 HIS727 LYS728 GLY729 GLN730 LEU731 PRO732 THR733 ARG734 LEU735 TRP736 VAL737 ALA738 PRO739 PRO740 THR741 ARG742 MET743 ASP744 ALA745 ALA746 GLN747 LEU748 THR749 GLU750 GLU751 GLY752 TYR753 TYR754 SER755 VAL756 PHE757 GLY758 LYS759 SER760 GLY761 ALA762 ARG763 ILE764 GLU765 ILE766 PRO767 GLY768 CYS769 SER770 LEU771 CYS772 MET773 GLY774 ASN775 GLN776 ALA777 ARG778 VAL779 ALA780 ASP781 GLY782 ALA783 THR784 VAL785 VAL786 SER787 THR788 SER789 THR790 ARG791 ASN792 PHE793 PRO794 ASN795 ARG796 LEU797 GLY798 THR799 GLY800 ALA801 ASN802 VAL803 PHE804 LEU805 ALA806 SER807 ALA808 GLU809 LEU810 ALA811 ALA812 VAL813 ALA814 ALA815 LEU816 ILE817 GLY818 LYS819 LEU820 PRO821 THR822 PRO823 GLU824 GLU825 TYR826 GLN827 THR828 TYR829 VAL830 ALA831 GLN832 VAL833 ASP834 LYS835 THR836 ALA837 VAL838 ASP839 THR840 TYR841 ARG842 TYR843 LEU844 ASN845 PHE846 ASN847 GLN848 LEU849 SER850 GLN851 TYR852 THR853 GLU854 LYS855 ALA856 ASP857 GLY858 VAL859 ILE860 PHE861 GLN862

Ligands
Unit 3 TRA866 F3S868
Unit 4 TRA867 F3S869

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany